Re: [R-pkg-devel] problems with .mod files
Don't run R CMD check against your working directory... only run it against your tar.gz source file. The devtools package will do this for you automatically from within R for convenience. On February 28, 2019 4:50:18 AM PST, "Rampal S. Etienne" wrote: >Dear Remi, > >The mod files are not in the src folder or in the tarball I submit to >CRAN, but I still get warnings that there are created. I have tried to >clean them by specifying this in the makefile, but then I get other >issues. > >Rampal > > >On 28-2-2019 0:02, Rémi Piatek wrote: >> These *.mod files are automatically created during compilation >whenever >> there is a module in the corresponding source file. They should not >be >> in the src folder of your package when you submit it to CRAN, but >they >> should not be a problem when they get created in this folder during >> compilation. >> >> Try to add the following line in .Rbuildignore (if this file does not > >> exist, create it in the main directory of your package): >> >> ^.*\.mod >> >> This will prevent R from including any *.mod files when building your > >> package. >> >> I hope this is helpful. >> >> Best, >> >> Remi >> >> >> On 2/26/19 10:00 PM, r-package-devel-requ...@r-project.org wrote: >>> Date: Mon, 25 Feb 2019 17:13:51 +0100 >>> From: "Rampal S. Etienne" >>> To:R-package-devel@r-project.org >>> Subject: [R-pkg-devel] problems with .mod files >>> Message-ID: >>> Content-Type: text/plain; charset="utf-8" >>> >>> Hello, >>> >>> I have been trying for weeks to get a package on CRAN, but keep >>> receiving warnings and notes, and errors using R-hub. The problems >>> started when I used FORTRAN code to speed up some functions. This >>> FORTRAN code introduces .mod files which are not accepted in the src >>> folder. I followed suggestions by Avraham Adler to clean the src >folder >>> from this file by introducing a makefile with a clean command in it, >but >>> then I get other errors, and above all, recently this solution did >not >>> seem to remove the .mod file on some systems, as I still got the >warning >>> that this file was found in the src folder (but not on my machine!). >>> >>> So my question is: how do I prevent the creation of .mod files >during >>> compilation of the FORTRAN code, or how do I tell R that these files >are >>> OK in the src folder? >>> >>> Regards, >>> >>> Rampal Etienne >>> >>> >> >> [[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >__ >R-package-devel@r-project.org mailing list >https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Sent from my phone. Please excuse my brevity. __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] problems with .mod files
Dear Remi, The mod files are not in the src folder or in the tarball I submit to CRAN, but I still get warnings that there are created. I have tried to clean them by specifying this in the makefile, but then I get other issues. Rampal On 28-2-2019 0:02, Rémi Piatek wrote: > These *.mod files are automatically created during compilation whenever > there is a module in the corresponding source file. They should not be > in the src folder of your package when you submit it to CRAN, but they > should not be a problem when they get created in this folder during > compilation. > > Try to add the following line in .Rbuildignore (if this file does not > exist, create it in the main directory of your package): > > ^.*\.mod > > This will prevent R from including any *.mod files when building your > package. > > I hope this is helpful. > > Best, > > Remi > > > On 2/26/19 10:00 PM, r-package-devel-requ...@r-project.org wrote: >> Date: Mon, 25 Feb 2019 17:13:51 +0100 >> From: "Rampal S. Etienne" >> To:R-package-devel@r-project.org >> Subject: [R-pkg-devel] problems with .mod files >> Message-ID: >> Content-Type: text/plain; charset="utf-8" >> >> Hello, >> >> I have been trying for weeks to get a package on CRAN, but keep >> receiving warnings and notes, and errors using R-hub. The problems >> started when I used FORTRAN code to speed up some functions. This >> FORTRAN code introduces .mod files which are not accepted in the src >> folder. I followed suggestions by Avraham Adler to clean the src folder >> from this file by introducing a makefile with a clean command in it, but >> then I get other errors, and above all, recently this solution did not >> seem to remove the .mod file on some systems, as I still got the warning >> that this file was found in the src folder (but not on my machine!). >> >> So my question is: how do I prevent the creation of .mod files during >> compilation of the FORTRAN code, or how do I tell R that these files are >> OK in the src folder? >> >> Regards, >> >> Rampal Etienne >> >> > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] problems with .mod files
These *.mod files are automatically created during compilation whenever there is a module in the corresponding source file. They should not be in the src folder of your package when you submit it to CRAN, but they should not be a problem when they get created in this folder during compilation. Try to add the following line in .Rbuildignore (if this file does not exist, create it in the main directory of your package): ^.*\.mod This will prevent R from including any *.mod files when building your package. I hope this is helpful. Best, Remi On 2/26/19 10:00 PM, r-package-devel-requ...@r-project.org wrote: > Date: Mon, 25 Feb 2019 17:13:51 +0100 > From: "Rampal S. Etienne" > To:R-package-devel@r-project.org > Subject: [R-pkg-devel] problems with .mod files > Message-ID: > Content-Type: text/plain; charset="utf-8" > > Hello, > > I have been trying for weeks to get a package on CRAN, but keep > receiving warnings and notes, and errors using R-hub. The problems > started when I used FORTRAN code to speed up some functions. This > FORTRAN code introduces .mod files which are not accepted in the src > folder. I followed suggestions by Avraham Adler to clean the src folder > from this file by introducing a makefile with a clean command in it, but > then I get other errors, and above all, recently this solution did not > seem to remove the .mod file on some systems, as I still got the warning > that this file was found in the src folder (but not on my machine!). > > So my question is: how do I prevent the creation of .mod files during > compilation of the FORTRAN code, or how do I tell R that these files are > OK in the src folder? > > Regards, > > Rampal Etienne > > [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] problems with .mod files
Hello, I have been trying for weeks to get a package on CRAN, but keep receiving warnings and notes, and errors using R-hub. The problems started when I used FORTRAN code to speed up some functions. This FORTRAN code introduces .mod files which are not accepted in the src folder. I followed suggestions by Avraham Adler to clean the src folder from this file by introducing a makefile with a clean command in it, but then I get other errors, and above all, recently this solution did not seem to remove the .mod file on some systems, as I still got the warning that this file was found in the src folder (but not on my machine!). So my question is: how do I prevent the creation of .mod files during compilation of the FORTRAN code, or how do I tell R that these files are OK in the src folder? Regards, Rampal Etienne __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
