Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Where can I find the current tex compiler / pandocs setup on CRAN check systems so I can adjust my CI, to replicate the failure? On Sat, Nov 30, 2019 at 11:45 AM Yoni wrote: > Thank you for the clarification regarding roxygen2, it does look like a > confounding issue. > > I will try to resolve the paths in the tex. > > Thank you for the help. > > On Sat, Nov 30, 2019 at 11:39 AM Iñaki Ucar > wrote: > >> >> >> El sáb., 30 nov. 2019 16:22, Yoni escribió: >> >>> Thank you for the clarification. >>> >>> I am then more confused. >>> >>> The CRAN version of the package (texPreview) has been unchanged since Oct >>> 23, at which point it was passing the checks with no errors. >>> >> >> If your package is sitting on CRAN since then, and in fact I see in your >> DESCRIPTION that you generated the docs with roxygen2 6.1.1, then the >> roxygen2 update has nothing to do with your check error. You run roxygen2; >> CRAN doesn't. >> >> Iñaki >> > > > -- > Yoni > > You do not learn to swim from books and lectures on the theory of buoyancy > (Box 1990) > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the clarification regarding roxygen2, it does look like a confounding issue. I will try to resolve the paths in the tex. Thank you for the help. On Sat, Nov 30, 2019 at 11:39 AM Iñaki Ucar wrote: > > > El sáb., 30 nov. 2019 16:22, Yoni escribió: > >> Thank you for the clarification. >> >> I am then more confused. >> >> The CRAN version of the package (texPreview) has been unchanged since Oct >> 23, at which point it was passing the checks with no errors. >> > > If your package is sitting on CRAN since then, and in fact I see in your > DESCRIPTION that you generated the docs with roxygen2 6.1.1, then the > roxygen2 update has nothing to do with your check error. You run roxygen2; > CRAN doesn't. > > Iñaki > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
El sáb., 30 nov. 2019 16:22, Yoni escribió: > Thank you for the clarification. > > I am then more confused. > > The CRAN version of the package (texPreview) has been unchanged since Oct > 23, at which point it was passing the checks with no errors. > If your package is sitting on CRAN since then, and in fact I see in your DESCRIPTION that you generated the docs with roxygen2 6.1.1, then the roxygen2 update has nothing to do with your check error. You run roxygen2; CRAN doesn't. Iñaki [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
On 30/11/2019 10:21 a.m., Yoni wrote:
Thank you for the clarification.
I am then more confused.
The CRAN version of the package (texPreview) has been unchanged since
Oct 23, at which point it was passing the checks with no errors.
Here is the CRAN mirror on GitHub with the example that is now erroring.
https://github.com/cran/texPreview/blob/master/R/kable.R
The examples section seems to have valid R code in them.
Last week (after roxygen2 was updated on CRAN to 7.0.1) the same
documentation is throwing errors.
Here is the CRAN checks link:
https://cran.r-project.org/web/checks/check_results_texPreview.html
Has the method of checking documentation changed in the past week that
would cause these previously working examples to start to fail?
I don't really know what the cause is, but I suspect the roxygen2 update
is a coincidence. In your CRAN log you show this error:
> x <- tex_preview(tex,returnType = 'input')
Error in tex_preview.default(obj, tex_lines, stem, overwrite,
keep_pdf, :
! LaTeX Error: File `/tmp/Rtmp6V8kds/tex_temp.tex ' not found.
Type X to quit or to proceed,
or enter new name. (Default extension: tex )
Enter file name:
! Emergency stop.
l.17 \input{ /tmp/Rtmp6V8kds/tex_temp.tex }
If I look really closely at the LaTeX error message, I see that the
filename has a space at the end. Your \input macro had spaces both
before and after. Perhaps a LaTeX update makes the trailing space
significant, and that's the issue? I couldn't spot where those spaces
came from; maybe if you just remove them the problem will go away.
Duncan Murdoch
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Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the clarification. I am then more confused. The CRAN version of the package (texPreview) has been unchanged since Oct 23, at which point it was passing the checks with no errors. Here is the CRAN mirror on GitHub with the example that is now erroring. https://github.com/cran/texPreview/blob/master/R/kable.R The examples section seems to have valid R code in them. Last week (after roxygen2 was updated on CRAN to 7.0.1) the same documentation is throwing errors. Here is the CRAN checks link: https://cran.r-project.org/web/checks/check_results_texPreview.html Has the method of checking documentation changed in the past week that would cause these previously working examples to start to fail? Thank you for the help On Sat, Nov 30, 2019 at 10:09 AM Duncan Murdoch wrote: > On 30/11/2019 9:59 a.m., Yoni wrote: > > Thank you for the advice. > > > > I think that (a) is a problem to implement since the new roxygen2 is on > the > > CRAN systems and I can not control which version they are using to build > > the package in the checks. > > I don't think CRAN runs roxygen2 at all. It tests based on the > description of documentation in Writing R Extensions. > > Duncan Murdoch > > > > > I have gone with option (c), which is unfortunate since I will need to > > change my examples twice to accommodate a problem that another package, > > that has such a high degree of reverse dependency, has created. > > > > > > On Sat, Nov 30, 2019 at 9:42 AM Hugh Parsonage > > > wrote: > > > >> You could (a) install the updated roxygen from github and rebuild the > man/ > >> files ; (b) manually edit the Rd files without using roxygen ; or (c) > >> remove the examples until you can apply the fix. > >> > >> On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: > >> > >>> I received a message from CRAN yesterday stating my package is > erroring on > >>> all the systems all of a sudden. > >>> > >>> https://cran.r-project.org/web/checks/check_results_texPreview.html > >>> > >>> After some investigation the root of the errors looks like it came from > >>> the > >>> new release of roxygen2 (7.0.1). > >>> > >>> https://github.com/r-lib/roxygen2/issues/990 > >>> > >>> Is there anything I can do in the interim to fix this problem since I > do > >>> not know when this apparent bug fix will be pushed to CRAN, relieving > my > >>> errors in the documentation builds, which could be beyond the warning > >>> period (2019-12-13), which the package will be removed from CRAN. > >>> > >>> Thank you > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> __ > >>> R-package-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>> > >> > > > > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
On 30/11/2019 9:59 a.m., Yoni wrote: Thank you for the advice. I think that (a) is a problem to implement since the new roxygen2 is on the CRAN systems and I can not control which version they are using to build the package in the checks. I don't think CRAN runs roxygen2 at all. It tests based on the description of documentation in Writing R Extensions. Duncan Murdoch I have gone with option (c), which is unfortunate since I will need to change my examples twice to accommodate a problem that another package, that has such a high degree of reverse dependency, has created. On Sat, Nov 30, 2019 at 9:42 AM Hugh Parsonage wrote: You could (a) install the updated roxygen from github and rebuild the man/ files ; (b) manually edit the Rd files without using roxygen ; or (c) remove the examples until you can apply the fix. On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: I received a message from CRAN yesterday stating my package is erroring on all the systems all of a sudden. https://cran.r-project.org/web/checks/check_results_texPreview.html After some investigation the root of the errors looks like it came from the new release of roxygen2 (7.0.1). https://github.com/r-lib/roxygen2/issues/990 Is there anything I can do in the interim to fix this problem since I do not know when this apparent bug fix will be pushed to CRAN, relieving my errors in the documentation builds, which could be beyond the warning period (2019-12-13), which the package will be removed from CRAN. Thank you [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
Thank you for the advice. I think that (a) is a problem to implement since the new roxygen2 is on the CRAN systems and I can not control which version they are using to build the package in the checks. I have gone with option (c), which is unfortunate since I will need to change my examples twice to accommodate a problem that another package, that has such a high degree of reverse dependency, has created. On Sat, Nov 30, 2019 at 9:42 AM Hugh Parsonage wrote: > You could (a) install the updated roxygen from github and rebuild the man/ > files ; (b) manually edit the Rd files without using roxygen ; or (c) > remove the examples until you can apply the fix. > > On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: > >> I received a message from CRAN yesterday stating my package is erroring on >> all the systems all of a sudden. >> >> https://cran.r-project.org/web/checks/check_results_texPreview.html >> >> After some investigation the root of the errors looks like it came from >> the >> new release of roxygen2 (7.0.1). >> >> https://github.com/r-lib/roxygen2/issues/990 >> >> Is there anything I can do in the interim to fix this problem since I do >> not know when this apparent bug fix will be pushed to CRAN, relieving my >> errors in the documentation builds, which could be beyond the warning >> period (2019-12-13), which the package will be removed from CRAN. >> >> Thank you >> >> [[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > -- Yoni You do not learn to swim from books and lectures on the theory of buoyancy (Box 1990) [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] roxygen2 7.0.1 backslash escape error
You could (a) install the updated roxygen from github and rebuild the man/ files ; (b) manually edit the Rd files without using roxygen ; or (c) remove the examples until you can apply the fix. On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote: > I received a message from CRAN yesterday stating my package is erroring on > all the systems all of a sudden. > > https://cran.r-project.org/web/checks/check_results_texPreview.html > > After some investigation the root of the errors looks like it came from the > new release of roxygen2 (7.0.1). > > https://github.com/r-lib/roxygen2/issues/990 > > Is there anything I can do in the interim to fix this problem since I do > not know when this apparent bug fix will be pushed to CRAN, relieving my > errors in the documentation builds, which could be beyond the warning > period (2019-12-13), which the package will be removed from CRAN. > > Thank you > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] roxygen2 7.0.1 backslash escape error
I received a message from CRAN yesterday stating my package is erroring on all the systems all of a sudden. https://cran.r-project.org/web/checks/check_results_texPreview.html After some investigation the root of the errors looks like it came from the new release of roxygen2 (7.0.1). https://github.com/r-lib/roxygen2/issues/990 Is there anything I can do in the interim to fix this problem since I do not know when this apparent bug fix will be pushed to CRAN, relieving my errors in the documentation builds, which could be beyond the warning period (2019-12-13), which the package will be removed from CRAN. Thank you [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
