Re: [R-sig-eco] Question about GEE and interaction plot
Dear Luis,
1) Have a look at the multcomp package for the multiple comparisons. You will
have to define the relevant contrasts manually.
2) reorder() will help you. reorder(C$Comportamiento, C$Conteo, FUN = mean)
Best regards,
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
+ 32 2 525 02 51
+ 32 54 43 61 85
thierry.onkel...@inbo.be
www.inbo.be
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asking him to perform a post-mortem examination: he may be able to say what the
experiment died of.
~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data.
~ Roger Brinner
The combination of some data and an aching desire for an answer does not ensure
that a reasonable answer can be extracted from a given body of data.
~ John Tukey
-Oorspronkelijk bericht-
Van: r-sig-ecology-boun...@r-project.org
[mailto:r-sig-ecology-boun...@r-project.org] Namens Luis Fernando García
Verzonden: vrijdag 17 oktober 2014 15:17
Aan: r-sig-ecology@r-project.org
Onderwerp: [R-sig-eco] Question about GEE and interaction plot
Hello all!
I am trying to analyze a dataset using the GEE.
This is what I have so far
C=read.table("Cnarinofinal4.txt",header=T)
attach(C)
names(C)
library(geepack)
Form <-
formula(Conteo~Grupo+Tiempo+Comportamiento+Comportamiento*Grupo+Comportamiento*Hora)
M4 <- geeglm(Form,family = poisson, id =Individuo, corstr = "exchangeable")
anova(M4)
1) I want to know if someboy knows how to perform post hoc comparisons for
significant terms, in this case I have a significance result for the
interaction Comportamiento*Hora and the factor Comportamiento.
2) I want to perform and interaction plot, I tried with the following code:
interaction.plot(C$Comportamiento,C$Tiempo,C$Conteo)
Nevertheless, I would like to plot the graph in a decreasing order by the mean
and also add the error bars. For the first approach I do not have available
info, and for the second one I found that data must be sorted before using the
function summarySE from the ggplot2 library, nevertheless it does not seem to
work anymore.
Any help you can provide will be welcome!
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[R-sig-eco] Question about GEE and interaction plot
Hello all!
I am trying to analyze a dataset using the GEE.
This is what I have so far
C=read.table("Cnarinofinal4.txt",header=T)
attach(C)
names(C)
library(geepack)
Form <-
formula(Conteo~Grupo+Tiempo+Comportamiento+Comportamiento*Grupo+Comportamiento*Hora)
M4 <- geeglm(Form,family = poisson, id =Individuo, corstr = "exchangeable")
anova(M4)
1) I want to know if someboy knows how to perform post hoc comparisons for
significant terms, in this case I have a significance result for the
interaction Comportamiento*Hora and the factor Comportamiento.
2) I want to perform and interaction plot, I tried with the following code:
interaction.plot(C$Comportamiento,C$Tiempo,C$Conteo)
Nevertheless, I would like to plot the graph in a decreasing order by the
mean and also add the error bars. For the first approach I do not have
available info, and for the second one I found that data must be sorted
before using the function summarySE from the ggplot2 library, nevertheless
it does not seem to work anymore.
Any help you can provide will be welcome!
HoraIndividuo Comportamiento Tiempo Grupo Conteo
0 1 Exploración NOCHE MACHO 1
0 1 interacciones NOCHE MACHO 0
0 1 Mantenimiento NOCHE MACHO 0
0 1 AlimentaciónNOCHE MACHO 5
0 1 ReproducciónNOCHE MACHO 0
0 1 Reposo NOCHE MACHO 2
0 1 Exacavación NOCHE MACHO 0
0 2 Exploración NOCHE MACHO 0
0 2 interacciones NOCHE MACHO 0
0 2 Mantenimiento NOCHE MACHO 0
0 2 AlimentaciónNOCHE MACHO 0
0 2 ReproducciónNOCHE MACHO 0
0 2 Reposo NOCHE MACHO 7
0 2 Exacavación NOCHE MACHO 0
0 3 Exploración NOCHE MACHO 1
0 3 interacciones NOCHE MACHO 0
0 3 Mantenimiento NOCHE MACHO 0
0 3 AlimentaciónNOCHE MACHO 0
0 3 ReproducciónNOCHE MACHO 0
0 3 Reposo NOCHE MACHO 7
0 3 Exacavación NOCHE MACHO 0
0 4 Exploración NOCHE MACHO 3
0 4 interacciones NOCHE MACHO 0
0 4 Mantenimiento NOCHE MACHO 0
0 4 AlimentaciónNOCHE MACHO 1
0 4 ReproducciónNOCHE MACHO 0
0 4 Reposo NOCHE MACHO 5
0 4 Exacavación NOCHE MACHO 0
0 5 Exploración NOCHE MACHO 1
0 5 interacciones NOCHE MACHO 0
0 5 Mantenimiento NOCHE MACHO 0
0 5 AlimentaciónNOCHE MACHO 1
0 5 ReproducciónNOCHE MACHO 0
0 5 Reposo NOCHE MACHO 8
0 5 Exacavación NOCHE MACHO 0
0 6 Exploración NOCHE MACHO 3
0 6 interacciones NOCHE MACHO 0
0 6 Mantenimiento NOCHE MACHO 0
0 6 AlimentaciónNOCHE MACHO 0
0 6 ReproducciónNOCHE MACHO 0
0 6 Reposo NOCHE MACHO 2
0 6 Exacavación NOCHE MACHO 0
0 7 Exploración NOCHE HEMBRA 3
0 7 interacciones NOCHE HEMBRA 0
0 7 Mantenimiento NOCHE HEMBRA 0
0 7 AlimentaciónNOCHE HEMBRA 0
0 7 ReproducciónNOCHE HEMBRA 0
0 7 Reposo NOCHE HEMBRA 5
0 7 Exacavación NOCHE HEMBRA 0
0 8 Exploración NOCHE HEMBRA 2
0 8 interacciones NOCHE HEMBRA 0
0 8 Mantenimiento NOCHE HEMBRA 0
0 8 AlimentaciónNOCHE HEMBRA 0
0 8 ReproducciónNOCHE HEMBRA 0
0 8 Reposo NOCHE HEMBRA 2
0 8 Exacavación NOCHE HEMBRA 0
0 9 Exploración NOCHE HEMBRA 2
0 9 interacciones NOCHE HEMBRA 0
0 9 Mantenimiento NOCHE HEMBRA 0
0 9 AlimentaciónNOCHE HEMBRA 0
0 9 ReproducciónNOCHE HEMBRA 0
0 9 Reposo NOCHE HEMBRA 5
0 9 Exacavación NOCHE HEMBRA 0
0 10 Exploración NOCHE HEMBRA 6
0 10 interacciones NOCHE HEMBRA 0
0 10 Mantenimiento NOCHE HEMBRA 0
0 10 AlimentaciónNOCHE HEMBRA 0
0 10 ReproducciónNOCHE HEMBRA 0
0 10 Reposo NOCHE HEMBRA 2
0 10 Exacavación NOCHE HEMBRA 0
0 11 Exploración NOCHE HEMBRA 1
0 11 interacciones NOCHE HEMBRA 0
0 11 Mantenimiento NOCHE HEMBRA 0
0 11 AlimentaciónNOCHE HEMBRA 2
0 11 ReproducciónNOCHE HEMBRA 0
0 11 Reposo NOCHE HEMBRA 4
0 11 Exacavación NOCHE HEMBRA 0
0 12 Exploración NOCHE HEMBRA 2
0 12 interacciones NOCHE HEMBRA 0
0 12 Ma
