[R-sig-Geo] measuring angle or relative direction of 2 lines
measuring the angle between intersecting lines: Does anyone know of any helpful tools/methods in R for measuring the angle between two intersecting lines in a map or an equation that would do so with the start and end latitudes and longitudes of the two lines? Or give directions of lines? Cheers Tracey [[alternative HTML version deleted]] ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] Creating big raster from small tiles
Thanks, I basically have to reclass() all 72 tiles, then aggregate() them from 30 arc seconds to 5 minutes and eventually put them in a brick with other rasters so I can average across the layers. I thought unionExtent() was going to be the ticket, but that just effects the extent. unionRaster() is really what would be cool for working with tiles. I'll take a look at the gdal stuff Steve On Sun, Oct 16, 2011 at 10:01 PM, Robert J. Hijmans r.hijm...@gmail.com wrote: Steven, In principle you could give merge all tiles (e.g. make a list of RasterLayer objects and use do.call ) but merge is quite slow (something that can easily be be improved; and I expect it will be over the coming months). What I would do is use run gdalbuildvrt (that comes with the FWtools). This creates a single header file that lets you access all the tiles as a single virtual file. If you want a single file for better performance, you can use writeRaster to save it to e.g. a single geotiff file. Robert On Sun, Oct 16, 2011 at 8:54 PM, steven mosher mosherste...@gmail.com wrote: I have 72 tiles in a tif format and each tile is 30X30 tile class : RasterLayer dimensions : 3600, 3600, 1296 (nrow, ncol, ncell) resolution : 0.00833, 0.00833 (x, y) extent : 60, 90, 60, 90 (xmin, xmax, ymin, ymax) coord. ref. : NA values : C:/Users/steve/ min value : 0 max value : 255 What I'd like to do is find the fastest way to bring all 72 tiles into one big raster. merge() seems like one good choice, where I would merge each tile with a blank raster that would get filled in incrementally by each tile world class : RasterLayer dimensions : 21600, 43200, 93312 (nrow, ncol, ncell) resolution : 0.00833, 0.00833 (x, y) extent : -180, 180, -90, 90 (xmin, xmax, ymin, ymax) coord. ref. : +proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs +towgs84=0,0,0 values : none world - merge(tile, world) and the repeat that for the remaining 71 tiles. I'm also think that one could extract the values from the tile and use setValues but that appears to hit the memory wall in Windows. The other option I suppose is to use writeValues() and create a big file from the tiles. Am I missing any obvious options? Steve ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] errors in installing HDF5 package under windows
On 10/16/2011 02:10 PM, zhijie zhang wrote: cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs CYGWIN environment variable option nodosfilewarning turns off this warning. Have you tried this suggestion? Paul -- Paul Hiemstra, Ph.D. Global Climate Division Royal Netherlands Meteorological Institute (KNMI) Wilhelminalaan 10 | 3732 GK | De Bilt | Kamer B 3.39 P.O. Box 201 | 3730 AE | De Bilt tel: +31 30 2206 494 http://intamap.geo.uu.nl/~paul http://nl.linkedin.com/pub/paul-hiemstra/20/30b/770 ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] Delete points within a certain distance of each other
spatstat::nndist? 2011/10/17 Paul Hiemstra paul.hiems...@knmi.nl On 10/15/2011 02:57 PM, Sandeep Patil wrote: Hello all I have about 4500 spatial points which are irregularly spaced... What is want to do is to replace points that are clustered very near each other by one point ...i.e say the distance betweeen Point A Point B is less than a threshold that i will define , i will delete either A or B and essentially do this for the complete dataset so that there is at least a minimum separation between every pair of points. Any idea how to proceed ? Sandeep [[alternative HTML version deleted]] ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo ?spDists, ?zerodist Paul -- Paul Hiemstra, Ph.D. Global Climate Division Royal Netherlands Meteorological Institute (KNMI) Wilhelminalaan 10 | 3732 GK | De Bilt | Kamer B 3.39 P.O. Box 201 | 3730 AE | De Bilt tel: +31 30 2206 494 http://intamap.geo.uu.nl/~paul http://nl.linkedin.com/pub/paul-hiemstra/20/30b/770 ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo [[alternative HTML version deleted]] ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] IDW example
On 10/16/11, Hodgess, Erin, wrote:
Dear R Sig Geo People:
Here is probably a dumb question, so please forgive me in advance (or
swear, whatever is most appropriate): could someone recommend a good
reference on IDW that has a numeric example, please?
Sure, check out Paul Bolstad's GIS Fundamentals textbook. My third edition has
a very small worked example on pages 447-448.
It is straightforward to implement a small worked IDW example in a
spreadsheet. You can mess around with the form of the weight, the distance to
the point to be interpolated, and so on. Of course, it is not too hard to do
this in R, either! gstat can do it, and you can roll your own code, e.g.:
# idw
# A function to perform IDW Interpolation to a matrix
# z is a vector of heights, distance is an mxn distance matrix
# indicating distances between the m grid points and n scattered
# sampled points, k is the power (typically 2), and num.neighs is
# the closest x points to use in the interpolation.
idw - function(z, distance, k, num.neighs) {
idw.z - rep(0, length(distance[,1]))
for (i in 1:length(distance[,1])) {
d - sort(distance[i,], index.return=TRUE) # sort to find closest points
w - 1 / d$x[1:num.neighs]^k # The vector of the weights
idw.z[i] - sum(z[d$ix[1:num.neighs]]*w) / sum(w) # The value for grid
cell i
}
idw.mat - matrix(idw.z, nrow=40, ncol=40) # convert to matrix
return(idw.mat)
}
Hope this helps,
Ashton
On 10/16/11, Hodgess, Erin, wrote:
Dear R Sig Geo People:
Here is probably a dumb question, so please forgive me in advance (or
swear, whatever is most appropriate): could someone recommend a good
reference on IDW that has a numeric example, please?
I like to work things out on a small scale to see how they work.
thanks,
Erin
Erin M. Hodgess, PhD
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: hodge...@uhd.edu
[[alternative HTML version deleted]]
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Ashton Shortridge
Associate Professor ash...@msu.edu
Dept of Geography http://www.msu.edu/~ashton
235 Geography Building ph (517) 432-3561
Michigan State University fx (517) 432-1671
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Re: [R-sig-Geo] IDW example
Believe it or not, the Wikipedia entry has the formula listed. You can easily try it out yourself. It's such a simple procedure that it can be done by hand. http://en.wikipedia.org/wiki/Inverse_distance_weighting Pete On 10/16/11, Hodgess, Erin hodge...@uhd.edu wrote: Dear R Sig Geo People: Here is probably a dumb question, so please forgive me in advance (or swear, whatever is most appropriate): could someone recommend a good reference on IDW that has a numeric example, please? I like to work things out on a small scale to see how they work. thanks, Erin Erin M. Hodgess, PhD Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto: hodge...@uhd.edu [[alternative HTML version deleted]] ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] IDW example
Hi Erin, did you check the book from Roger Bivand -Edzer Pebesma and Gomez-Rubìo: Applied spatial data analysis with R? There is some short explanation of how the algorithm work and just one record of code. If you want I think I can send you some line of codes as examples. Giuseppe Da: r-sig-geo-requ...@r-project.org r-sig-geo-requ...@r-project.org A: r-sig-geo@r-project.org Inviato: Lunedì 17 Ottobre 2011 12:00 Oggetto: R-sig-Geo Digest, Vol 98, Issue 15 - Messaggio inoltrato - Send R-sig-Geo mailing list submissions to r-sig-geo@r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/r-sig-geo or, via email, send a message with subject or body 'help' to r-sig-geo-requ...@r-project.org You can reach the person managing the list at r-sig-geo-ow...@r-project.org When replying, please edit your Subject line so it is more specific than Re: Contents of R-sig-Geo digest... Today's Topics: 1. errors in installing HDF5 package under windows (zhijie zhang) 2. IDW example (Hodgess, Erin) 3. Creating big raster from small tiles (steven mosher) 4. Re: Creating big raster from small tiles (steven mosher) 5. Re: Creating big raster from small tiles (Robert J. Hijmans) 6. Re: Getting the other GIS to recognize files created by writeRaster() (Robert J. Hijmans) 7. measuring angle or relative direction of 2 lines (Tracey Osborne) 8. Re: Creating big raster from small tiles (steven mosher) 9. Re: errors in installing HDF5 package under windows (Paul Hiemstra) 10. Re: Delete points within a certain distance of each other (Paul Hiemstra) 11. Re: Delete points within a certain distance of each other (Mathieu Rajerison) 12. Re: errors in installing HDF5 package under windows (Paul Hiemstra) Dear all, The HDF5 binary package is not available now, so i download the source package and unzip it. When i check it before building the package, some errors appeared, see below. I donot think it's related with the R and HDF5 versions. I guess i missed something here. --Errors-- * installing *source* package 'hdf5' ... cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames cp: cannot stat `/cygdrive/d/Backup/my documents/hdf5-support/cyghdf5-0.dll': No such file or directory cp: cannot stat `/cygdrive/d/Backup/my documents/hdf5-support/mgwz.dll': No such file or directory ERROR: configuration failed for package 'hdf5' * removing 'C:/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5' - If anybody have some experiences on reading HDF4 and HDF5 datasets successfully, please also give me more information on this. I have searched the R help, and cannot find a solution. Somebody suggest the rgdal, which seems not to work. Any suggestions or help are greatly appreciated. -- With Kind Regards, oooO: (..): :\.(:::Oooo:: ::\_)::(..):: :::)./::: ::(_/ : [***] ZhiJie Zhang,MD,PhD Dept.of Epidemiology, School of Public Health,Fudan University Office:Room 443, Building 8 Office Tel./Fax.:+86-21-54237410 Address:No. 138 Yi Xue Yuan Road,Shanghai,China Postcode:200032 Email:epis...@gmail.com [***] oooO: (..): :\.(:::Oooo:: ::\_)::(..):: :::)./::: ::(_/ : [[alternative HTML version deleted]] Dear R Sig Geo People: Here is probably a dumb question, so please forgive me in advance (or swear, whatever is most appropriate): could someone recommend a good reference on IDW that has a numeric example, please? I like to work things out on a small scale to see how they work. thanks, Erin Erin M. Hodgess, PhD Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto: hodge...@uhd.edu [[alternative HTML version deleted]] I have 72 tiles in a tif format and each tile is 30X30 tile class : RasterLayer dimensions : 3600, 3600, 1296 (nrow, ncol, ncell) resolution : 0.00833, 0.00833 (x, y) extent : 60, 90, 60, 90 (xmin, xmax, ymin, ymax) coord. ref. : NA values : C:/Users/steve/ min value : 0 max value : 255 What I'd like to do is find the fastest way to bring all 72 tiles into one big raster. merge() seems like one good choice, where I would merge each tile with a blank raster that would get filled in incrementally by each tile world class : RasterLayer dimensions : 21600, 43200,
Re: [R-sig-Geo] IDW example -- gstat, spatstat
You are right -- google pointed me to the example: http://www.asdar-book.org/book/vis_mod.R chunk 31, where the function krige, without variogram model, results in idw. To avoid confusing scripts that suggest kriging takes place, package gstat also provides a function idw, which does the same thing, by zn.idw - idw(log(zinc) ~ 1, meuse, meuse.grid) In addition, package spatstat contains a function called idw, doing idw interpolation on a marked point pattern. When loading both spatstat and gstat, this means the order of loading matters. On 10/17/2011 03:39 PM, giuseppe calamita wrote: Hi Erin, did you check the book from Roger Bivand -Edzer Pebesma and Gomez-Rubìo: Applied spatial data analysis with R? There is some short explanation of how the algorithm work and just one record of code. If you want I think I can send you some line of codes as examples. Giuseppe Da: r-sig-geo-requ...@r-project.orgr-sig-geo-requ...@r-project.org A: r-sig-geo@r-project.org Inviato: Lunedì 17 Ottobre 2011 12:00 Oggetto: R-sig-Geo Digest, Vol 98, Issue 15 - Messaggio inoltrato - Send R-sig-Geo mailing list submissions to r-sig-geo@r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/r-sig-geo or, via email, send a message with subject or body 'help' to r-sig-geo-requ...@r-project.org You can reach the person managing the list at r-sig-geo-ow...@r-project.org When replying, please edit your Subject line so it is more specific than Re: Contents of R-sig-Geo digest... Today's Topics: 1. errors in installing HDF5 package under windows (zhijie zhang) 2. IDW example (Hodgess, Erin) 3. Creating big raster from small tiles (steven mosher) 4. Re: Creating big raster from small tiles (steven mosher) 5. Re: Creating big raster from small tiles (Robert J. Hijmans) 6. Re: Getting the other GIS to recognize files created by writeRaster() (Robert J. Hijmans) 7. measuring angle or relative direction of 2 lines (Tracey Osborne) 8. Re: Creating big raster from small tiles (steven mosher) 9. Re: errors in installing HDF5 package under windows (Paul Hiemstra) 10. Re: Delete points within a certain distance of eachother (Paul Hiemstra) 11. Re: Delete points within a certain distance of eachother (Mathieu Rajerison) 12. Re: errors in installing HDF5 package under windows (Paul Hiemstra) Dear all, The HDF5 binary package is not available now, so i download the source package and unzip it. When i check it before building the package, some errors appeared, see below. I donot think it's related with the R and HDF5 versions. I guess i missed something here. --Errors-- * installing *source* package 'hdf5' ... cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5/libs CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames cp: cannot stat `/cygdrive/d/Backup/my documents/hdf5-support/cyghdf5-0.dll': No such file or directory cp: cannot stat `/cygdrive/d/Backup/my documents/hdf5-support/mgwz.dll': No such file or directory ERROR: configuration failed for package 'hdf5' * removing 'C:/PROGRA~1/R/R-213~1.2/bin/i386/HDF5~1.RCH/hdf5' - If anybody have some experiences on reading HDF4 and HDF5 datasets successfully, please also give me more information on this. I have searched the R help, and cannot find a solution. Somebody suggest the rgdal, which seems not to work. Any suggestions or help are greatly appreciated. ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo -- Edzer Pebesma Institute for Geoinformatics (ifgi), University of Münster Weseler Straße 253, 48151 Münster, Germany. Phone: +49 251 8333081, Fax: +49 251 8339763 http://ifgi.uni-muenster.de http://www.52north.org/geostatistics e.pebe...@wwu.de ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] multitype point patterns
Hi Aurelie, Try this: skate.ppp$marks - data.frame(species=skate.ppp$marks, number=skate$number) HTH, MArcelino At 17:41 17/10/2011, GodinA wrote: Hi all, I have a multitype point patterns representing 12 different species as follow: marked planar point pattern: 821 points multitype, with levels = 8890 91 92 93 94 96 98 99 100 102 107 window: rectangle = [-60, -45] x [40, 56] units head(as.data.frame(skate.ppp)) x y marks 1 -54.198 55.12788 2 -51.071 43.01588 3 -47.050 48.11188 4 -46.377 47.55288 5 -46.470 47.27488 6 -51.301 43.04188 I would like to add another mark with the number of species found at each location. I'm sure this is fairly straightforward, but somehow I am struggling with it! I have been doing the following: marks(skate.ppp) - skate$number However, when I do so, I am replacing all my previous marks by these new ones... head(as.data.frame(skate.ppp)) x y marks 1 -54.198 55.127 2 2 -51.071 43.015 1 3 -47.050 48.111 2 4 -46.377 47.552 1 5 -46.470 47.274 1 6 -51.301 43.041 4 skate.ppp marked planar point pattern: 821 points marks are numeric, of type âdoubleâ window: rectangle = [-60, -45] x [40, 56] units Thank you very much in advance! Aurelie - Aurelie Cosandey-Godin Ph.D. Candidate, Department of Biology Industrial Graduate Fellow, WWF-Canada Dalhousie University | Biology Dept. |Halifax, NS, Canada Email: god...@dal.ca | Web: wormlab.biology.dal.ca -- Want to learn more about sharks in Atlantic Canada? Visit ShARCC! www.atlanticsharks.org -- View this message in context: http://r-sig-geo.2731867.n2.nabble.com/multitype-point-patterns-tp6901052p6901052.html Sent from the R-sig-geo mailing list archive at Nabble.com. ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo Marcelino de la Cruz Rot Depto. Biologia Vegetal EUIT Agricola Universidad Politecnica de Madrid tel: 34 + 913365435 [[alternative HTML version deleted]] ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
Re: [R-sig-Geo] multitype point patterns
Awesome! Thank you very much MArcelino! - Aurelie Cosandey-Godin Ph.D. Candidate, Department of Biology Industrial Graduate Fellow, WWF-Canada Dalhousie University | Biology Dept. |Halifax, NS, Canada Email: god...@dal.ca | Web: wormlab.biology.dal.ca -- Want to learn more about sharks in Atlantic Canada? Visit ShARCC! www.atlanticsharks.org -- View this message in context: http://r-sig-geo.2731867.n2.nabble.com/multitype-point-patterns-tp6901052p6901258.html Sent from the R-sig-geo mailing list archive at Nabble.com. ___ R-sig-Geo mailing list R-sig-Geo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
