Re: [R-sig-Geo] Species distribution modeling with presence-only data using log-Gaussian Cox process

[Edzer Pebesma]

A  way out of this may be to make a local copy of the lgcp sources, 
remove the rpanel dependency from DESCRIPTION, and install it from 
there. You won't get the functions that need rpanel, but those might not 
be essential.


On 09/02/2021 20:09, Manuel Spínola wrote:

Thank you very much Edzer.

I tried to install lgcp, but I got an error message regarding BWidget.  
I think that Bwidget is an external software and I don't know how to 
install it in MacOS (Big Sur 11.2).


Manuel

This is the error that I get when trying to install lgcp in R 4.0.3:

xcrun: error: invalid active developer path 
(/Library/Developer/CommandLineTools), missing xcrun at: 
/Library/Developer/CommandLineTools/usr/bin/xcrun

Warning message:
In system2("/usr/bin/otool", c("-L", shQuote(DSO)), stdout = TRUE) :
   running command ''/usr/bin/otool' -L 
'/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so'' had 
status 1

Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
   [tcl] can't find package BWidget.

Error: unable to load R code in package ‘rpanel’
Execution halted

El mar, 9 feb 2021 a las 12:51, Edzer Pebesma 
(mailto:edzer.pebe...@uni-muenster.de>>) 
escribió:


Have you tried package lgcp?

On 09/02/2021 17:26, Manuel Spínola wrote:
 > Dear list members,
 >
 > I would like to know of any R package that can be used for
modeling species
 > distribution with presence-only data using log-Gaussian Cox process.
 >
 > Manuel
 >

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--
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspin...@una.cr 
mspinol...@gmail.com 
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río 


Institutional website: ICOMVIS 


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Re: [R-sig-Geo] Species distribution modeling with presence-only data using log-Gaussian Cox process

[Manuel Spínola]

Thank you very much Edzer.

I tried to install lgcp, but I got an error message regarding BWidget.  I
think that Bwidget is an external software and I don't know how to install
it in MacOS (Big Sur 11.2).

Manuel

This is the error that I get when trying to install lgcp in R 4.0.3:

xcrun: error: invalid active developer path
(/Library/Developer/CommandLineTools), missing xcrun at:
/Library/Developer/CommandLineTools/usr/bin/xcrun
Warning message:
In system2("/usr/bin/otool", c("-L", shQuote(DSO)), stdout = TRUE) :
  running command ''/usr/bin/otool' -L
'/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so''
had status 1
Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
  [tcl] can't find package BWidget.

Error: unable to load R code in package ‘rpanel’
Execution halted

El mar, 9 feb 2021 a las 12:51, Edzer Pebesma (<
edzer.pebe...@uni-muenster.de>) escribió:

> Have you tried package lgcp?
>
> On 09/02/2021 17:26, Manuel Spínola wrote:
> > Dear list members,
> >
> > I would like to know of any R package that can be used for modeling
> species
> > distribution with presence-only data using log-Gaussian Cox process.
> >
> > Manuel
> >
>
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> R-sig-Geo mailing list
> R-sig-Geo@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>


-- 
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspin...@una.cr 
mspinol...@gmail.com
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río 
Institutional website: ICOMVIS 

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Re: [R-sig-Geo] Species distribution modeling with presence-only data using log-Gaussian Cox process

[Edzer Pebesma]

Have you tried package lgcp?

On 09/02/2021 17:26, Manuel Spínola wrote:

Dear list members,

I would like to know of any R package that can be used for modeling species
distribution with presence-only data using log-Gaussian Cox process.

Manuel



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[R-sig-Geo] Species distribution modeling with presence-only data using log-Gaussian Cox process

[Manuel Spínola]

Dear list members,

I would like to know of any R package that can be used for modeling species
distribution with presence-only data using log-Gaussian Cox process.

Manuel

-- 
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspin...@una.cr 
mspinol...@gmail.com
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río 
Institutional website: ICOMVIS 

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