Re: [Rdkit-discuss] Contractors working with the RDKit?

2011-03-20 Thread Evgueni Kolossov
We can do this kind of work at Scientific Software Solutions Ltd. (
www.scisoftpro.com), especially with C++

Regards,
Evgueni

On 20 March 2011 05:46, Greg Landrum greg.land...@gmail.com wrote:

 Dear all,

 I was recently asked if there was anyone out there who was able to do
 contract development work with or on the RDKit. It's a good question,
 but I didn't have a good answer handy. So I'm asking here.

 If you currently do, or are willing to do, contract development work
 either extending the RDKit or developing new tools based on the RDKit,
 please reply to this thread. It would be helpful if you indicate your
 comfort level on both the C++ or Python sides. If there's sufficient
 interest/response, I'd be happy to include a section either on
 rdkit.org or on the wiki with names/links.

 Thanks,
 -greg


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Re: [Rdkit-discuss] Contractors working with the RDKit?

2011-03-20 Thread TJ O'Donnell
I am willing and able to do consulting and contract programming using RDKit,
using either Python or C++

http://gnova.com

TJ

TJ O'Donnell, Ph.D.
President, gNova, Inc.
t...@gnova.com

On Sat, Mar 19, 2011 at 10:46 PM, Greg Landrum greg.land...@gmail.com wrote:
 Dear all,

 I was recently asked if there was anyone out there who was able to do
 contract development work with or on the RDKit. It's a good question,
 but I didn't have a good answer handy. So I'm asking here.

 If you currently do, or are willing to do, contract development work
 either extending the RDKit or developing new tools based on the RDKit,
 please reply to this thread. It would be helpful if you indicate your
 comfort level on both the C++ or Python sides. If there's sufficient
 interest/response, I'd be happy to include a section either on
 rdkit.org or on the wiki with names/links.

 Thanks,
 -greg

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Re: [Rdkit-discuss] Fatal Python error: Interpreter not initialized (version mismatch?) after python upgrade with rdkit on OSX

2011-03-20 Thread Greg Landrum
HI Hari,

On Sun, Mar 20, 2011 at 11:51 PM, hari jayaram hari...@gmail.com wrote:
 Hi ,
 I upgraded to python 2.7.1 on my OSX Leopard ( 32 bit) running laptop.
 I did have the svn version of rdkit running very well on the machine
 using the cmake build instructions from

 http://code.google.com/p/rdkit/wiki/BuildingWithCmake

 After the switch I rebuilt rdkit with pointers to the new python.

 cmake -D  
 PYTHON_EXECUTABLE=/Library/Frameworks/Python.framework/Versions/2.7/bin/python


 However after the cmake build I am getting  a crash and message .
 Fatal Python error: Interpreter not initialized (version mismatch)
 This happens when I try a
 import rdkit works fine
 from rdkit import Chem ---immediately crashes python REPL and gives me
 the error message

 I also rebuild boost after the switch to python 2.7 by running a
 bootstrap and bjam install as detailed in the instructions
 (http://code.google.com/p/rdkit/wiki/BuildingWithCmake)
 but the crash and error persists.

 Any pointers on why the python commandline throws such a fit with an
 import of rdkit.Chem and terminates after the switch to 2.7.1

It could be that cmake chose the wrong python libraries to link
against. Try doing:
grep PYTHON_LIBRARY CMakeCache.txt
in your build dir. If what you see isn't what you expect (i.e. if it's
still using the system python), then rerun cmake using -D
PYTHON_LIBRARY=/usr/lib/python2.7/config/libpython2.7.a (or whatever
the path is)
You might also need to provide -D
PYTHON_INCLUDE_DIR=/usr/include/python2.7 (again, or whatever the
path is)

Best regards,
-greg

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