Re: [Rdkit-discuss] Compilation Errors on RHEL7

[Markus Sitzmann]

Re: [Rdkit-discuss] Compilation Errors on RHEL7

[Dimitri Maziuk via Rdkit-discuss]

On 10/24/2018 12:10 PM, Dimitri Maziuk via Rdkit-discuss wrote:
> Yes. I once spent a couple of hours trying and ended up installing docer

docker

-- 
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu



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Re: [Rdkit-discuss] Compilation Errors on RHEL7

[Dimitri Maziuk via Rdkit-discuss]

On 10/24/2018 11:32 AM, Oellien, Frank wrote:
> Hi,
> 
> I am trying to compile RDKit on a RHEL7 system using Python 2.7 and Boost 
> 1.68 
...
> Has somebody already seen this error?

Yes. I once spent a couple of hours trying and ended up installing docer
and pulling a conda/rdkit container instead. I strongly recommend doing
that, or finding a singularity version of the same.

-- 
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu



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Re: [Rdkit-discuss] Compilation Errors on RHEL7

[Paolo Tosco]

Dear Frank,

I am just guessing here, mostly based on a quick Google search, so 
please bear with me if I am wrong.


Could it be that Boost 1.68 and the RDKit were built with different 
versions of gcc, i.e. the built-in 4.7 and a devtoolset version? I would 
make sure that both Boost and the RDKit were built with the latest 
devtoolset-7 
 toolchain.


I hope the above helps; if not, please reply to me off-list with details 
on the compiler toolchain that you used and I will try to reproduce the 
issue.


Best,
Paolo


On 10/24/18 17:32, Oellien, Frank wrote:


Hi,

I am trying to compile RDKit on a RHEL7 system using Python 2.7 and 
Boost 1.68 and I retrieve the following issue:


64%] Linking CXX executable testReaction

../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined 
reference to 
`boost::archive::text_iarchive_impl::load_override(boost::archive::class_name_type&)'


../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined 
reference to 
`boost::archive::archive_exception::archive_exception(boost::archive::archive_exception 
const&)'


../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined 
reference to 
`boost::archive::text_iarchive_impl::load(std::__cxx11::basic_stringstd::char_traits, std::allocator >&)'


../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined 
reference to 
`boost::archive::text_oarchive_impl::save(std::__cxx11::basic_stringstd::char_traits, std::allocator > const&)'


collect2: error: ld returned 1 exit status

make[2]: *** [Code/GraphMol/ChemReactions/testReaction] Error 1

make[1]: *** 
[Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all] Error 2


make: *** [all] Error 2

Has somebody already seen this error?

Best regards,

Frank



*FRANK OELLIEN, PhD*

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[Rdkit-discuss] Compilation Errors on RHEL7

[Oellien, Frank]

Hi,

I am trying to compile RDKit on a RHEL7 system using Python 2.7 and Boost 1.68 
and I retrieve the following issue:
64%] Linking CXX executable testReaction
../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined reference to 
`boost::archive::text_iarchive_impl::load_override(boost::archive::class_name_type&)'
../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined reference to 
`boost::archive::archive_exception::archive_exception(boost::archive::archive_exception
 const&)'
../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined reference to 
`boost::archive::text_iarchive_impl::load(std::__cxx11::basic_string, std::allocator >&)'
../../../lib/libRDKitChemReactions.so.1.2019.03.1dev1: undefined reference to 
`boost::archive::text_oarchive_impl::save(std::__cxx11::basic_string, std::allocator > const&)'
collect2: error: ld returned 1 exit status
make[2]: *** [Code/GraphMol/ChemReactions/testReaction] Error 1
make[1]: *** [Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/all] 
Error 2
make: *** [all] Error 2
Has somebody already seen this error?


Best regards,
Frank


FRANK OELLIEN, PhD
LabHead Cheminformatics and Modeling
Computer-Aided Drug Design (CADD) / Medicinal Chemistry

[cid:image001.gif@01D1640E.6AC721D0]

AbbVie Deutschland GmbH & Co KG
Neuroscience Discovery
Knollstr.
67061 Ludwigshafen
OFFICE+49 621-589-4683
FAX  +49 621-589-63449
EMAIL frank.oell...@abbvie.com
JABBER  [cid:image001.png@01D27897.8A51B0D0]  
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should notify the sender immediately by telephone or by return e-mail and 
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Sitz der Gesellschaft: Wiesbaden - Registergericht: AG Wiesbaden HRA 9790
Pers?nlich haftende Gesellschafterin: AbbVie Komplement?r GmbH
Sitz der pers?nlich haftenden Gesellschafterin: Wiesbaden - Registergericht: AG 
Wiesbaden HRB 26371
Gesch?ftsf?hrer: Dr. Patrick Horber, Thomas Scheidmeir, Dr. Stefan Simianer, 
William J. Chase
Vorsitzende des Aufsichtsrats: Dr. Azita Saleki-Gerhardt

This communication may contain information that is proprietary, confidential, 
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delete it from his or her computer.

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