Hi Ravi, For the new relax 3.2.3 version I announced last week (http://article.gmane.org/gmane.science.nmr.relax.announce/57), have you had the time to check if this fixes the problem? If you would like to receive these relax announcements, you can sign up for the relax-announce mailing list at https://mail.gna.org/listinfo/relax-announce/. This email list usually receives less than 10 emails per year.
Cheers, Edward On 2 July 2014 18:28, Ravi Pratap Barnwal <ravi1...@gmail.com> wrote: > Hi Edward, > I did try updating it using the svn command but it did not solve the issue. > I probably need to wait for the newer version. When are you going to release > that. > > > regards > ravi > > > > On Wed, Jul 2, 2014 at 12:29 AM, Edward d'Auvergne <edw...@nmr-relax.com> > wrote: >> >> Hi, >> >> For reference, the bug report is at >> https://gna.org/bugs/index.php?22257. I have now fixed the problem in >> the relax trunk. The issue was exactly as I thought, and as I >> described in the bug report, but I needed confirmation that this was >> indeed the problem as your issue might have been a different bug. If >> you have subversion installed on your system, then you can obtain the >> latest code using the command (via a terminal): >> >> svn co http://svn.gna.org/svn/relax/trunk ./relax-trunk >> >> See http://www.nmr-relax.com/download.html#Source_code_repository and >> http://www.nmr-relax.com/manual/Latest_sources_relax_repositories.html >> for more details. Otherwise you will have to wait for me to release >> relax 3.2.3 with this as well as a few other bug fixes. >> >> Cheers, >> >> Edward >> >> >> >> On 1 July 2014 23:29, Ravi Pratap Barnwal <ravi1...@gmail.com> wrote: >> > Hi Edward, >> > I have submitted the bug-report. >> > >> > regards >> > ravi >> > >> > >> > On Mon, Jun 30, 2014 at 12:54 AM, Edward d'Auvergne >> > <edw...@nmr-relax.com> >> > wrote: >> >> >> >> Hi Ravi, >> >> >> >> I think I have found what might be causing the problem. But I'll wait >> >> until you have submitted a bug report before making any fixes and >> >> releasing a new version of relax, just to be sure that the problem you >> >> are seeing is the problem I am fixing. >> >> >> >> Cheers, >> >> >> >> Edward >> >> >> >> >> >> On 30 June 2014 08:28, Edward d'Auvergne <edw...@nmr-relax.com> wrote: >> >> > Hi Ravi, >> >> > >> >> > I'm having difficulty replicating the issue. Would you be able to >> >> > create a bug report using the link >> >> > https://gna.org/bugs/?func=additem&group=relax ? Cheers! The more >> >> > information you include the better. For example the minimal steps >> >> > require to trigger the bug. You could also attach your screenshot >> >> > there. If there is enough detail for me to replicate the bug, then >> >> > it >> >> > usually takes me 5-10 minutes to fix it. I could then release relax >> >> > 3.2.3 later this week with the fix. >> >> > >> >> > Cheers, >> >> > >> >> > Edward >> >> > >> >> > >> >> > On 27 June 2014 21:04, Ravi Pratap Barnwal <ravi1...@gmail.com> >> >> > wrote: >> >> >> Hi Edward, >> >> >> I am using version 3.2.2 on mac 10.8.5 (mountain lion). I am using >> >> >> GUI >> >> >> mode >> >> >> to run the relax. Here is the report from "Tools-> System >> >> >> Information" >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> relax 3.2.2 >> >> >> >> >> >> Molecular dynamics by NMR data >> >> >> analysis >> >> >> >> >> >> Copyright (C) 2001-2006 Edward >> >> >> d'Auvergne >> >> >> Copyright (C) 2006-2014 the relax >> >> >> development >> >> >> team >> >> >> >> >> >> This is free software which you are welcome to modify and >> >> >> redistribute >> >> >> under >> >> >> the conditions of the >> >> >> GNU General Public License (GPL). This program, including all >> >> >> modules, >> >> >> is >> >> >> licensed under the GPL >> >> >> and comes with absolutely no warranty. For details type 'GPL' >> >> >> within >> >> >> the >> >> >> relax prompt. >> >> >> >> >> >> Assistance in using the relax prompt and scripting interface can be >> >> >> accessed >> >> >> by typing 'help' within >> >> >> the prompt. >> >> >> >> >> >> Processor fabric: Uni-processor. >> >> >> >> >> >> >> >> >> relax> sys_info() >> >> >> >> >> >> Hardware information: >> >> >> Machine: x86_64 >> >> >> Processor: i386 >> >> >> Processor name: Intel(R) Xeon(R) CPU W3530 @ >> >> >> 2.80GHz >> >> >> Endianness: little >> >> >> Total RAM size: 2048.0 Mb >> >> >> Total swap size: 11264.0 Mb >> >> >> >> >> >> Operating system information: >> >> >> System: Darwin >> >> >> Release: 12.5.0 >> >> >> Version: Darwin Kernel Version 12.5.0: Sun Sep >> >> >> 29 >> >> >> 13:33:47 PDT 2013; root:xnu-2050.48.12~1/RELEASE_X86_64 >> >> >> Mac version: 10.8.5 (, , ) x86_64 >> >> >> Distribution: >> >> >> Full platform string: Darwin-12.5.0-x86_64-i386-64bit >> >> >> >> >> >> Python information: >> >> >> Architecture: 64bit >> >> >> Python version: 2.7.2 >> >> >> Python branch: >> >> >> Python build: default, Apr 5 2012 18:46:15 >> >> >> Python compiler: GCC 4.2.1 (Apple Inc. build 5666) (dot >> >> >> 3) >> >> >> Libc version: >> >> >> Python implementation: CPython >> >> >> Python revision: >> >> >> Python executable: >> >> >> /Applications/relax.app/Contents/MacOS/python >> >> >> Python flags: sys.flags(debug=0, py3k_warning=0, >> >> >> division_warning=0, division_new=0, inspect=0, interactive=0, >> >> >> optimize=1, >> >> >> dont_write_bytecode=0, no_user_site=0, no_site=0, >> >> >> ignore_environment=0, >> >> >> tabcheck=0, verbose=0, unicode=0, bytes_warning=0) >> >> >> Python float info: >> >> >> sys.float_info(max=1.7976931348623157e+308, >> >> >> max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, >> >> >> min_exp=-1021, >> >> >> min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, >> >> >> radix=2, rounds=1) >> >> >> Python module path: >> >> >> ['/Applications/relax.app/Contents/Resources/lib/python27.zip', >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7', >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/plat-darwin', >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/plat-mac', >> >> >> >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/plat-mac/lib-scriptpackages', >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/lib-tk', >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/lib-old', >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/lib-dynload', >> >> >> >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip', >> >> >> >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/site-packages', >> >> >> >> >> >> >> >> >> '/Applications/relax.app/Contents/Resources/lib/python2.7/site-packages'] >> >> >> >> >> >> Python packages and modules (most are optional): >> >> >> >> >> >> Name Installed Version Path >> >> >> minfx True 1.0.6 >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/minfx >> >> >> bmrblib True 1.0.3 >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/bmrblib >> >> >> numpy True 1.6.1 >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/numpy >> >> >> scipy True 0.10.1 >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/scipy >> >> >> wxPython True 2.9.3.1 osx-cocoa (classic) >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/wx >> >> >> matplotlib False >> >> >> mpi4py True 1.2.2 >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/mpi4py >> >> >> epydoc True 3.0.1 >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/epydoc >> >> >> optparse True 1.5.3 >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/optparse.pyc >> >> >> readline False >> >> >> profile True >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/profile.pyc >> >> >> bz2 True >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/lib-dynload/bz2.so >> >> >> gzip True >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/gzip.pyc >> >> >> io True >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/io.pyc >> >> >> xml True 0.8.4 (internal) >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/xml/__init__.pyc >> >> >> xml.dom.minidom True >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/site-packages.zip/xml/dom/minidom.pyc >> >> >> >> >> >> relax information: >> >> >> Version: 3.2.2 >> >> >> Processor fabric: Uni-processor. >> >> >> >> >> >> relax C modules: >> >> >> >> >> >> Module Compiled File type >> >> >> Path >> >> >> target_functions.relax_fit True 3-way bundle (i386, ppc, >> >> >> x86_64) >> >> >> >> >> >> >> >> >> /Applications/relax.app/Contents/Resources/lib/python2.7/lib-dynload/target_functions/relax_fit.so >> >> >> >> >> >> >> >> >> >> >> >> regards >> >> >> ravi >> >> >> >> >> >> >> >> >> On Fri, Jun 27, 2014 at 12:28 AM, Edward d'Auvergne >> >> >> <edw...@nmr-relax.com> >> >> >> wrote: >> >> >>> >> >> >>> Hi Ravi, >> >> >>> >> >> >>> Which version of relax are you using and which operating system are >> >> >>> you running it on? Are you using the newest 3.2.2 version? Could >> >> >>> you >> >> >>> run 'relax -i' or, in the GUI, select the 'Tools->System >> >> >>> information' >> >> >>> menu item and the copy and paste the output into the body of a new >> >> >>> email? Note that due to too much abuse of the system, attachments >> >> >>> are >> >> >>> no longer allowed on the relax mailing lists to avoid excessive >> >> >>> strain >> >> >>> on the open source infrastructure. All attachments are filtered, >> >> >>> i.e. >> >> >>> stripped from the message. See your archived message at >> >> >>> http://article.gmane.org/gmane.science.nmr.relax.user/1695 for >> >> >>> example. If you would like to share a file in such a situation, >> >> >>> the >> >> >>> best solution is to create a bug report using the link >> >> >>> https://gna.org/bugs/?func=additem&group=relax and to attach the >> >> >>> file >> >> >>> there. There are also support requests for non-bug related issues >> >> >>> where files can also be attached >> >> >>> (https://gna.org/support/?func=additem&group=relax). >> >> >>> >> >> >>> Cheers, >> >> >>> >> >> >>> Edward >> >> >>> >> >> >>> >> >> >>> On 27 June 2014 00:50, Ravi Pratap Barnwal <ravi1...@gmail.com> >> >> >>> wrote: >> >> >>> > Hi, >> >> >>> > I am encountering problem while loading R1,R2 and nOe values >> >> >>> > calculated >> >> >>> > for >> >> >>> > two different fields into relax (precompiled version 3.2.2) for >> >> >>> > mac >> >> >>> > 10.8.5. >> >> >>> > When i try to add the data and try to change the "free format >> >> >>> > file >> >> >>> > settings" for respective file, it is kind of hanging and does not >> >> >>> > proceed >> >> >>> > anywhere. My files are in the following format, >> >> >>> > 3 GLY 1.814795542 0.090739777 >> >> >>> > 4 SER 2.267446596 0.11337233 >> >> >>> > 5 MET 2.621469801 0.13107349 >> >> >>> > 6 ASP 2.751590887 0.137579544 >> >> >>> > >> >> >>> > >> >> >>> > Am i doing something wrong? I am following the protocol from this >> >> >>> > link, >> >> >>> > >> >> >>> > >> >> >>> > >> >> >>> > >> >> >>> > http://www.nmr-relax.com/manual/d_Auvergne_protocol_GUI_mode_data_pipe_initialisation.html >> >> >>> > >> >> >>> > I have attached a screen-shot for the problem. Any help is highly >> >> >>> > appreciated. >> >> >>> > >> >> >>> > regards >> >> >>> > ravi >> >> >>> > _______________________________________________ >> >> >>> > relax (http://www.nmr-relax.com) >> >> >>> > >> >> >>> > This is the relax-users mailing list >> >> >>> > relax-users@gna.org >> >> >>> > >> >> >>> > To unsubscribe from this list, get a password >> >> >>> > reminder, or change your subscription options, >> >> >>> > visit the list information page at >> >> >>> > https://mail.gna.org/listinfo/relax-users >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> --With best wishes >> >> >> Ravi Pratap Barnwal, Ph. D. >> >> >> Research Associate, >> >> >> Prof. G Varani's Group, >> >> >> Department of Chemistry, >> >> >> University of Washington, Seattle >> >> >> WA 98195-1700 >> >> >> USA >> >> >> Phone-206 617 9423 (M) >> >> >> Email- barn...@u.washington.edu >> > >> > >> > >> > >> > -- >> > --With best wishes >> > Ravi Pratap Barnwal, Ph. D. >> > Research Associate, >> > Prof. G Varani's Group, >> > Department of Chemistry, >> > University of Washington, Seattle >> > WA 98195-1700 >> > USA >> > Phone-206 617 9423 (M) >> > Email- barn...@u.washington.edu > > > > > -- > --With best wishes > Ravi Pratap Barnwal, Ph. D. > Research Associate, > Prof. G Varani's Group, > Department of Chemistry, > University of Washington, Seattle > WA 98195-1700 > USA > Phone-206 617 9423 (M) > Email- barn...@u.washington.edu _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
