[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
New PR in #16221


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Hmm looking more closely I dont think the directory being deleted / being 
in `dist/` is a real issue. This is because in `release-build.sh` we do `cd 
..`[1] before trying to look for the file. I think just fixing the file naming 
thing should be sufficient. I'm going to try that first. 
[1] 
https://github.com/apache/spark/blob/202fcd21ce01393fa6dfaa1c2126e18e9b85ee96/dev/create-release/release-build.sh#L184


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
I think release-tag.sh is only run while building RCs and final releases - 
I dont think we run it for nightly builds - So thats not getting run as a part 
of my test. 


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  

https://github.com/apache/spark/blob/202fcd21ce01393fa6dfaa1c2126e18e9b85ee96/dev/create-release/release-tag.sh

I mean.




---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
For the 2nd point, I thought make-tag.sh should update the version in 
DESCRIPTION file. Was that not the case when we make preparations for 2.1.1?




---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
No I found the problem - its two fold
- The tgz is not copied into the `dist` directory in `make-distribution.sh` 
[1]. This is relatively easy to fix. It only works in Python because the entire 
python directory is copied into the dist directory.

- The second problem is one of naming - Our jar file is called 
SparkR_2.1.0.tar.gz as that is the version in DESCRIPTION file in R. I think we 
need to do a copy at some point to create SparkR_2.1.1-SNAPSHOT.tar.gz   

[1] 
https://github.com/apache/spark/blob/202fcd21ce01393fa6dfaa1c2126e18e9b85ee96/dev/make-distribution.sh#L244



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
I'm guessing maybe the path needs to be a full path?



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
This just means the source tgz file is not created?

Copying and signing R source package
cp: cannot stat 
`spark-2.1.1-SNAPSHOT-bin-hadoop2.6/R/SparkR_2.1.1-SNAPSHOT.tar.gz': No such 
file or directory




---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Hmm - The problem is that the directory we want to get the file from gets 
deleted in the previous step ? I'm going to debug this locally now. 


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Hmm still doesn't work 

```
* DONE (SparkR)
+ popd
+ mkdir 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist/conf
+ cp 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/docker.properties.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/fairscheduler.xml.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/log4j.properties.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/metrics.properties.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/slaves.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/spark-defaults.conf.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/conf/spark-env.sh.template
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist/conf
+ cp 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/README.md
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist
+ cp -r 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/bin
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist
+ cp -r 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/python
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist
+ cp -r 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/sbin
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist
+ '[' -d 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/R/lib/SparkR
 ']'
+ mkdir -p 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist/R/lib
+ cp -r 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/R/lib/SparkR
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist/R/lib
+ cp 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/R/lib/sparkr.zip
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist/R/lib
+ '[' true == true ']'
+ TARDIR_NAME=spark-2.1.1-SNAPSHOT-bin-hadoop2.6
+ 
TARDIR=/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/spark-2.1.1-SNAPSHOT-bin-hadoop2.6
+ rm -rf 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/spark-2.1.1-SNAPSHOT-bin-hadoop2.6
+ cp -r 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/dist
 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/spark-2.1.1-SNAPSHOT-bin-hadoop2.6
+ tar czf spark-2.1.1-SNAPSHOT-bin-hadoop2.6.tgz -C 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6
 spark-2.1.1-SNAPSHOT-bin-hadoop2.6
+ rm -rf 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-hadoop2.6/spark-2.1.1-SNAPSHOT-bin-hadoop2.6
Copying and signing R source package
cp: cannot stat 
`spark-2.1.1-SNAPSHOT-bin-hadoop2.6/R/SparkR_2.1.1-SNAPSHOT.tar.gz': No such 
file or directory
```


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
@felixcheung I triggered a nightly build on branch-2.1 and this doesn't 
work correctly in the no-hadoop build. While building the vignettes we run into 
an error -- I'm going to change this to use another of the hadoop builds

```

~/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-without-hadoop/R
* checking for file 
'/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-without-hadoop/R/pkg/DESCRIPTION'
 ... OK
* preparing 'SparkR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR

Attaching package: 'SparkR'

The following objects are masked from 'package:stats':

cov, filter, lag, na.omit, predict, sd, var, window

The following objects are masked from 'package:base':

as.data.frame, colnames, colnames<-, drop, intersect, rank,
rbind, sample, subset, summary, transform, union

Spark package found in SPARK_HOME: 
/home/jenkins/workspace/spark-branch-2.1-package/spark-2.1.1-SNAPSHOT-bin-without-hadoop
Exception in thread "main" java.lang.NoClassDefFoundError: 
org/apache/hadoop/fs/FSDataInputStream
at 
org.apache.spark.deploy.SparkSubmitArguments$$anonfun$mergeDefaultSparkProperties$1.apply(SparkSubmitArguments.scala:118)
at 
org.apache.spark.deploy.SparkSubmitArguments$$anonfun$mergeDefaultSparkProperties$1.apply(SparkSubmitArguments.scala:118)
at scala.Option.getOrElse(Option.scala:121)
at 
org.apache.spark.deploy.SparkSubmitArguments.mergeDefaultSparkProperties(SparkSubmitArguments.scala:118)
at 
org.apache.spark.deploy.SparkSubmitArguments.(SparkSubmitArguments.scala:104)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:119)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.ClassNotFoundException: 
org.apache.hadoop.fs.FSDataInputStream
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
... 7 more
Quitting from lines 31-32 (sparkr-vignettes.Rmd)
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
JVM is not ready after 10 seconds
Execution halted
```


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-08 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
LGTM. I took another look at `release-build.sh` and I think it looks fine. 
Merging this into master, branch-2.1. I'll also see if I can test this out 
somehow on jenkins 


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-06 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
thanks, updated. @rxin could you please review release-build.sh?



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-06 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Test PASSed.
Refer to this link for build results (access rights to CI server needed): 
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/69712/
Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-06 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Merged build finished. Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-06 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69712 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69712/consoleFull)**
 for PR 16014 at commit 
[`6ef26fe`](https://github.com/apache/spark/commit/6ef26fe3134880924fad03f39b4d6faa84aa05e0).
 * This patch passes all tests.
 * This patch merges cleanly.
 * This patch adds no public classes.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-05 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69712 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69712/consoleFull)**
 for PR 16014 at commit 
[`6ef26fe`](https://github.com/apache/spark/commit/6ef26fe3134880924fad03f39b4d6faa84aa05e0).


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Merged build finished. Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Test PASSed.
Refer to this link for build results (access rights to CI server needed): 
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/69655/
Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69655 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69655/consoleFull)**
 for PR 16014 at commit 
[`c17601b`](https://github.com/apache/spark/commit/c17601b5ef9d6f4f1ebdf965377c1f64c0645fbf).
 * This patch passes all tests.
 * This patch merges cleanly.
 * This patch adds no public classes.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Ah got it - I didn't notice that. BTW the way @rxin handled this for pip is 
a bit different in 
https://github.com/apache/spark/commit/37e52f8793bff306a7ae5a9aecc16f28333b70e3

Might be good to merge with upstream and handle pip, R similarly ? 


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69655 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69655/consoleFull)**
 for PR 16014 at commit 
[`c17601b`](https://github.com/apache/spark/commit/c17601b5ef9d6f4f1ebdf965377c1f64c0645fbf).


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
As for release-build.sh - I had the change in there but I've changed it to 
make it more clear.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-12-04 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
@shivaram yes, that is correct and what I've found 
[here](https://github.com/apache/spark/pull/16014#issuecomment-263505953)

Basically I don't think it is the R source package process to include the 
html files (they are still here getting created), and as explained and you 
pointed out, they are not actually used by R.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Sorry I was caught up with some other stuff today. Will take a final look 
tomm morning. 


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
Any more thought on this? Without this we don't really have a signed 
tarball in the official release to release to CRAN...


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Merged build finished. Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Test PASSed.
Refer to this link for build results (access rights to CI server needed): 
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/69315/
Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69315 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69315/consoleFull)**
 for PR 16014 at commit 
[`c9c9802`](https://github.com/apache/spark/commit/c9c9802e67178e2283b1ebc9fa13f39db916773d).
 * This patch passes all tests.
 * This patch merges cleanly.
 * This patch adds no public classes.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69315 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69315/consoleFull)**
 for PR 16014 at commit 
[`c9c9802`](https://github.com/apache/spark/commit/c9c9802e67178e2283b1ebc9fa13f39db916773d).


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-29 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
@shivaram Cool, I did know about release-build but I didn't know it's 
running on Jenkins. I *think* we should be ok but might want to check Jenkins 
has "e1071" and "survival" which are optional for compatibility tests but `R 
CMD check` is enforcing/requiring it. If you recall, 
[this](https://github.com/apache/spark/pull/15790#issuecomment-259780799) is 
this conversation that prompted this change.

@rxin This PR updates what goes into the Spark binary release to match what 
we (intend to) release on CRAN for the R package

As for the diff, this is the delta between this PR and Spark 2.0.2 under 
the R/lib/SparkR directory. It turns out `R CMD check` also depends on Rd file 
generation in install-dev.sh (ie. `devtools::document(pkg="./pkg", 
roclets=c("rd")) }`).. this is going to take more time to untangle this in a 
follow up.

_what's additional_
```
SparkR/
-rw-r--r--   INDEX
drwxr-xr-x   doc

SparkR/Meta/
-rw-r--r--   vignette.rds

SparkR/doc/
-rw-r--r--   sparkr-vignettes.Rmd
-rw-r--r--   sparkr-vignettes.R
-rw-r--r--   sparkr-vignettes.html
-rw-r--r--   index.html
```

_what's omitted_
```
SparkR/html/
-rw-r--r--  1 root root  1319 Nov 29 08:05 R.css
-rw-r--r--  1 root root 81153 Nov 29 08:05 00Index.html
```

What it used to have `year.html` `write.parquet.html` 
`sparkR.session.html`, the html directory now only has 2 files. My 
understanding is these knitr html output are actually not used at runtime. I 
checked that `?sparkR.session` in the `sparkR` is still working correctly.



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-28 Thread rxin
Github user rxin commented on the issue:

https://github.com/apache/spark/pull/16014
  
Why is this a blocker thing?



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-28 Thread shivaram
Github user shivaram commented on the issue:

https://github.com/apache/spark/pull/16014
  
Just to clarify the Jenkins comment, we use Jenkins to test PRs and that 
doesn't run make-distribution.sh -- But the main release builds (say 2.0.2[2]) 
are also built on Jenkins by a separate job that calls just `release-build.sh 
package`[1] with the appropriate environment variables. 

[1] 
https://github.com/apache/spark/blob/master/dev/create-release/release-build.sh#L149

[2]https://amplab.cs.berkeley.edu/jenkins/view/Spark%20Release/job/spark-release-package/57/consoleFull


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-28 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
I thought we don't run `make-distribution.sh` on Jenkins, so I have been 
testing it manually/locally.
As per 
[here](https://github.com/apache/spark/pull/16014#discussion_r89912061) the 
output of install is different - I'll come back to list that in a bit.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-25 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Merged build finished. Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-25 Thread AmplabJenkins
Github user AmplabJenkins commented on the issue:

https://github.com/apache/spark/pull/16014
  
Test PASSed.
Refer to this link for build results (access rights to CI server needed): 
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/69175/
Test PASSed.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-25 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69175 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69175/consoleFull)**
 for PR 16014 at commit 
[`7977139`](https://github.com/apache/spark/commit/79771392f7a8c7fe4ed90b20aec05e5e65304975).
 * This patch passes all tests.
 * This patch merges cleanly.
 * This patch adds no public classes.


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-25 Thread felixcheung
Github user felixcheung commented on the issue:

https://github.com/apache/spark/pull/16014
  
@shivaram



---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org



[GitHub] spark issue #16014: [SPARK-18590][SPARKR] build R source package when making...

2016-11-25 Thread SparkQA
Github user SparkQA commented on the issue:

https://github.com/apache/spark/pull/16014
  
**[Test build #69175 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/69175/consoleFull)**
 for PR 16014 at commit 
[`7977139`](https://github.com/apache/spark/commit/79771392f7a8c7fe4ed90b20aec05e5e65304975).


---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at infrastruct...@apache.org or file a JIRA ticket
with INFRA.
---

-
To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org
For additional commands, e-mail: reviews-h...@spark.apache.org