[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Let me leave a link https://github.com/apache/spark/pull/18456 for the related discussion. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Meanwhile, let me try to find the root cause. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 H. I catefully suspect this one, in particular, the last non-comment change causes unknown test failure with -10 error code. Is it generally acceptable to revert a PR based on a wild guess? I have been investigating it but it is hard to reproduce. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 I think I am used to the symtoms here as I have tested many cases here. Let me try to organise and send a post to dev mailing list. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/18320 merged to master, thanks!! --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user shivaram commented on the issue: https://github.com/apache/spark/pull/18320 LGTM. The update looks good. Thanks for the thorough testing. We could also post a note on the dev list about this change and especially ask people who use `dapply` or `gapply` or the old `RDD` based API to test this out. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Thanks for a close look. I am pretty confident of the current state now. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user viirya commented on the issue: https://github.com/apache/spark/pull/18320 LGTM --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 retest this please --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/18320 right, thanks! none of my comment would suggest code changes - they should all be comment changes, feel free to not restart all tests --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 I will re-check these after addressing the comments: Mac OS - [ ] jobs with many stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] jobs with long stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] NULL when we expect it - https://github.com/apache/spark/pull/18320#issuecomment-309940653 - [ ] sleep before connection - https://github.com/apache/spark/pull/18320#discussion_r122687051 - [ ] full tests - [ ] dapply/gapply described in the PR CentOS - [ ] jobs with many stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] jobs with long stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] NULL when we expect it - https://github.com/apache/spark/pull/18320#issuecomment-309940653 - [ ] sleep before connection - https://github.com/apache/spark/pull/18320#discussion_r122687051 - [ ] full tests - [ ] dapply/gapply described in the PR --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 retest this please --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 retest this please. I don't think this PR caused that -9 issue. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 @felixcheung, @shivaram, I addressed the comments and ran some tests. I am positive of other tests I will proceed above. Before testing all, could we take a look to double check? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Mac OS - [ ] jobs with many stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] jobs with long stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] NULL when we expect it - https://github.com/apache/spark/pull/18320#issuecomment-309940653 - [ ] sleep before connection - https://github.com/apache/spark/pull/18320#discussion_r122687051 - [ ] full tests - [ ] dapply/gapply described in the PR CentOS - [ ] jobs with many stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] jobs with long stages - https://github.com/apache/spark/pull/18320#issuecomment-310312766 - [ ] NULL when we expect it - https://github.com/apache/spark/pull/18320#issuecomment-309940653 - [ ] sleep before connection - https://github.com/apache/spark/pull/18320#discussion_r122687051 - [ ] full tests - [ ] dapply/gapply described in the PR --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 retest this please --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/18320
**jobs with many stages**:
I tested the codes below:
```R
```r
df <- createDataFrame(list(list(1L, 1, "1", 0.1)), c("a", "b", "c", "d"))
for(i in 0:90) {
df <- (gapply(df, "a", function(key, x) { x }, schema(df)))
}
collect(df)
```
More iteration produced `StackOverflowError` in my local and CentOS. This
created 18201 tasks with 92 stages.
**jobs with long stages**:
I made the change as below:
```r
df <- createDataFrame(list(list(1L, 1, "1", 0.1)), c("a", "b", "c", "d"))
collect(dapply(repartition(df, 8), function(x) { x }, schema(df)))
```
after manual changes as below:
```r
outputCon <- socketConnection(
port = port, blocking = TRUE, open = "wb", timeout = connectionTimeout)
+Sys.sleep(600L)
+
# read the index of the current partition inside the RDD
partition <- SparkR:::readInt(inputCon)
```
This took 10 mins (default cores in executors was 8).
It looks both were fine. Would this address your concern enough
@felixcheung?
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Github user shivaram commented on the issue: https://github.com/apache/spark/pull/18320 Thanks ! LGTM. Lets also wait to see if @felixcheung has anything more --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 I checked R tests and the reproducer in the PR description passed fine on CentOS. > The other thing that would be good to manually test (since its not easy to write a unit test) is to see if the selectTimeout becomes NULL when we expect it to. Yes, I checked by manually printing out and checked the logs. I just double checked it became `NULL` when we want. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark issue #18320: [SPARK-21093][R] Terminate R's worker processes in the p...
Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 I checked R tests and the reproducer in the PR description passed fine. > The other thing that would be good to manually test (since its not easy to write a unit test) is to see if the selectTimeout becomes NULL when we expect it to. Yes, I checked by manually printing out and checked the logs. I just double checked it became `NULL` when we want. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Sure, I will test this one CentOS. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 (I tested the current state with Mac OS for now). --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/18320 > Also I'd suggest not committing this to branch-2.2 -- if we want to just fix the CentOS tests we can have a different change for the older branches agreed, this won't run as a part of CRAN checks so I think it's optional at this point to fix CentOS. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 I also tested the current state on CentOS for sure. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 Sure, I also think we should be very cateful and should not target 2.2.0. I will take a look for comments for sure. Please let me know if there is any concern more. I am willing to double check. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user HyukjinKwon commented on the issue: https://github.com/apache/spark/pull/18320 cc @shivaram too, could you take a look here too? I am very careful of this change and want to make sure. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
