[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[asfgit]

Github user asfgit closed the pull request at:

https://github.com/apache/spark/pull/8870


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[shivaram]

Github user shivaram commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-143320666
  
LGTM - Thanks @NarineK -- Merging this.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40233423
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Thnx! Done! would you guys review it and maybe we can close the jira ?


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40133609
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Let me know, if only "gaussian" will be sufficient for this example or if I 
should change the example so that it works for both, thanks!


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[mengxr]

Github user mengxr commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142370370
  
ok to test


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[SparkQA]

Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142372122
  
  [Test build #42845 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/42845/consoleFull)
 for   PR 8870 at commit 
[`a2044d4`](https://github.com/apache/spark/commit/a2044d4ced20af458c382dfd72d0bd20e5d28dc9).


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[SparkQA]

Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142379767
  
  [Test build #42845 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/42845/console)
 for   PR 8870 at commit 
[`a2044d4`](https://github.com/apache/spark/commit/a2044d4ced20af458c382dfd72d0bd20e5d28dc9).
 * This patch **passes all tests**.
 * This patch merges cleanly.
 * This patch adds no public classes.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[shivaram]

Github user shivaram commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40127437
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

AFAIK we dont -- but shouldn't the family be either gaussian or binomial ? 
Or to put it another way the example should have separate lines for each 
family. 


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40131267
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

And if we specify a list it is taking the first one: 
 family=c("gaussian","binomial")
 summary(model)
$coefficients
  Estimate
(Intercept)  6.5262226
Sepal_Width -0.2233611

family = "gaussian"
summary(model)
$coefficients
  Estimate
(Intercept)  6.5262226
Sepal_Width -0.2233611




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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142380009
  
Merged build finished. Test PASSed.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142380013
  
Test PASSed.
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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[mengxr]

Github user mengxr commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40126866
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

minor: `family = c("gaussian", "binomial")`. @shivaram Do we force R code 
style in doc?


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40129611
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

I see , I can change it to model <- glm(Sepal_Length ~ Sepal_Width, df, 
family="gaussian"), since it is an example. 
And also, it seems that there is a problem when I set: family="binomial", 
at least in my environment. An error is being thrown.



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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40130655
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Okay, I guess, for binomial it requires that: the labels should be in the 
specific range. 
In this example binomial is not working. 
The error says: classification labels should be in range {0 to 7  } 


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142371203
  
 Merged build triggered.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142371263
  
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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

GitHub user NarineK opened a pull request:

https://github.com/apache/spark/pull/8870

[SPARK-10760] [SparkR] SparkR glm: the documentation in examples - family 
argument is missing 

Hi everyone,

Since the family argument is required for the glm function, the execution 
of:

model <- glm(Sepal_Length ~ Sepal_Width, df)

is failing.

I've fixed the documentation by adding the family argument and also added 
the summay(model) which will show the coefficients for the model.

Thanks,
Narine


You can merge this pull request into a Git repository by running:

$ git pull https://github.com/NarineK/spark sparkrml

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/8870.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #8870


commit a2044d4ced20af458c382dfd72d0bd20e5d28dc9
Author: Narine Kokhlikyan 
Date:   2015-09-22T17:42:42Z

Fixed the documentation issue in the SparkR.glm examples




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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142367670
  
Can one of the admins verify this patch?


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40138521
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Thanks, I'll make the change!


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[shivaram]

Github user shivaram commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40138443
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Yeah just gaussian is fine.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[NarineK]

Github user NarineK commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40142384
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

Sorry for the trivial question - I'm new in jira/github world

Should I create a new pull request and change it to : model <- 
glm(Sepal_Length ~ Sepal_Width, df, family="gaussian") or can I directly commit 
the changes in the existing one ? 

Thanks,
Narine


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[shivaram]

Github user shivaram commented on a diff in the pull request:

https://github.com/apache/spark/pull/8870#discussion_r40144801
  
--- Diff: R/pkg/R/mllib.R ---
@@ -41,7 +41,8 @@ setClass("PipelineModel", representation(model = "jobj"))
 #' sqlContext <- sparkRSQL.init(sc)
 #' data(iris)
 #' df <- createDataFrame(sqlContext, iris)
-#' model <- glm(Sepal_Length ~ Sepal_Width, df)
+#' model <- glm(Sepal_Length ~ Sepal_Width, df, 
family=c("gaussian","binomial"))
--- End diff --

You can just create a commit on the same branch and push - it should show 
in this same PR


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142435301
  
Merged build finished. Test PASSed.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[SparkQA]

Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142435183
  
  [Test build #42863 has 
finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/42863/console)
 for   PR 8870 at commit 
[`339f997`](https://github.com/apache/spark/commit/339f99745081eccc3b9d03bb8323c607fac07899).
 * This patch **passes all tests**.
 * This patch merges cleanly.
 * This patch adds no public classes.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

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https://github.com/apache/spark/pull/8870#issuecomment-142435302
  
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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142430872
  
 Merged build triggered.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[AmplabJenkins]

Github user AmplabJenkins commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142430899
  
Merged build started.


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[GitHub] spark pull request: [SPARK-10760] [SparkR] SparkR glm: the documen...

[SparkQA]

Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/8870#issuecomment-142431655
  
  [Test build #42863 has 
started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/42863/consoleFull)
 for   PR 8870 at commit 
[`339f997`](https://github.com/apache/spark/commit/339f99745081eccc3b9d03bb8323c607fac07899).


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