[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/8039#issuecomment-128840782 Merging with master, branch-1.5 (using LGTM from previous PR) --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/8039#issuecomment-128838979 [Test build #40191 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/40191/console) for PR 8039 at commit [`bfbedc4`](https://github.com/apache/spark/commit/bfbedc4c31fa1b9f2be245381c7ce6debffc653a). * This patch **passes all tests**. * This patch merges cleanly. * This patch adds no public classes. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
GitHub user jkbradley opened a pull request: https://github.com/apache/spark/pull/8039 [SPARK-8481] [MLlib] GaussianMixtureModel predict accepting single vector Resubmit of [https://github.com/apache/spark/pull/6906] for adding single-vec predict to GMMs CC: @dkobylarz @mengxr To be merged with master and branch-1.5 You can merge this pull request into a Git repository by running: $ git pull https://github.com/jkbradley/spark gmm-predict-vec Alternatively you can review and apply these changes as the patch at: https://github.com/apache/spark/pull/8039.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #8039 commit bfbedc4c31fa1b9f2be245381c7ce6debffc653a Author: Dariusz Kobylarz Date: 2015-07-16T22:29:19Z [SPARK-8481] [MLlib] GaussianMixtureModel predict accepting single vector --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-123170860 @dkobylarz Could you please update the PR description to say what was done in this PR? It will become part of the git commit message (so the current description does not quite fit). Also, as you make updates, it is helpful if you only rebase in order to fix merge conflicts. Otherwise, it's hard to tell what changes you have made in each update. I'll take another look. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on a diff in the pull request: https://github.com/apache/spark/pull/6906#discussion_r34198402 --- Diff: mllib/src/main/scala/org/apache/spark/mllib/clustering/GaussianMixtureModel.scala --- @@ -84,6 +90,14 @@ class GaussianMixtureModel( } /** + * Given the input vector, return the membership values --- End diff -- Will this fit on 1 line (<= 100 chars)? If so, please do. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on a diff in the pull request:
https://github.com/apache/spark/pull/6906#discussion_r34198404
--- Diff:
mllib/src/test/scala/org/apache/spark/mllib/clustering/GaussianMixtureSuite.scala
---
@@ -148,6 +148,30 @@ class GaussianMixtureSuite extends SparkFunSuite with
MLlibTestSparkContext {
}
}
+ test("model prediction, parallel and local") {
+
--- End diff --
scala style: Please eliminate all of these extra newlines and only use
newlines for logical divides. See other tests for examples.
Please review
[https://cwiki.apache.org/confluence/display/SPARK/Spark+Code+Style+Guide]
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on a diff in the pull request:
https://github.com/apache/spark/pull/6906#discussion_r34198407
--- Diff:
mllib/src/test/scala/org/apache/spark/mllib/clustering/GaussianMixtureSuite.scala
---
@@ -148,6 +148,30 @@ class GaussianMixtureSuite extends SparkFunSuite with
MLlibTestSparkContext {
}
}
+ test("model prediction, parallel and local") {
+
+val data = sc.parallelize(GaussianTestData.data)
+
+val gmm = new GaussianMixture().setK(2).setSeed(0).run(data)
+
+val batchPredictions = gmm.predict(data).collect()
--- End diff --
Be careful about assuming rows are returned in the same order. It
generally works but is not guaranteed. Instead, how about doing:
```
val batchPredictions = gmm.predict(data)
batchPredictions.zip(data).collect().foreach { case (batchPred, datum) =>
assert(batchPred === gmm.predict(datum))
}
```
Note the use of triple equals (better type handling).
Same for soft predictions.
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on a diff in the pull request:
https://github.com/apache/spark/pull/6906#discussion_r34198399
--- Diff:
mllib/src/main/scala/org/apache/spark/mllib/clustering/GaussianMixtureModel.scala
---
@@ -66,6 +66,12 @@ class GaussianMixtureModel(
responsibilityMatrix.map(r => r.indexOf(r.max))
}
+ /** Maps given point to its cluster index. */
+ def predict(point: Vector) : Int = {
--- End diff --
scala style: no space between parenthesis and colon
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-119728659 @dkobylarz Could you please update the PR description to say what was done in this PR? It will become part of the git commit message (so the current description does not quite fit). Jenkins test this please --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user hadfield commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-119706005 Jenkins, retest this please. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user dkobylarz commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-119005632 I quickly reviewed the Jenkins log. Mllib tests seem to be passed, it's the sql test that fails. Have there been any changes to 1.4 branch that are responsible for it? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-118661622 Great thanks! --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user dkobylarz commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-118197018 it will be added on Monday --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-117793356 Ping --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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Github user jkbradley commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-115022178 @dkobylarz Thanks for the PR! This looks fine, but could you please add a simple test to the unit tests? It could be a new unit test in the GMM suite, or just an extra line testing this method in an existing unit test. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113605226 [Test build #35306 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/35306/consoleFull) for PR 6906 at commit [`dce2432`](https://github.com/apache/spark/commit/dce2432a21310c6feffd5d6bad3de99c7138c71f). * This patch **fails Scala style tests**. * This patch merges cleanly. * This patch adds no public classes. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113604854 [Test build #35306 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/35306/consoleFull) for PR 6906 at commit [`dce2432`](https://github.com/apache/spark/commit/dce2432a21310c6feffd5d6bad3de99c7138c71f). --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user JoshRosen commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113604117 I think that this particular build failure is due to code that failed our style checker being committed to master; we've fixed this with a hotfix commit. You can use the `dev/lint-scala` script to run these style checks yourself. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user JoshRosen commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113604001 Jenkins, retest this please. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user dkobylarz commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113603121 A blank line with two space characters (added by IDE) caused the test to fail. Is there some source code validation tool I could apply to my code before contributing? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113582910 [Test build #35290 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/35290/consoleFull) for PR 6906 at commit [`dce2432`](https://github.com/apache/spark/commit/dce2432a21310c6feffd5d6bad3de99c7138c71f). * This patch **fails Scala style tests**. * This patch merges cleanly. * This patch adds no public classes. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user SparkQA commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113582323 [Test build #35290 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/35290/consoleFull) for PR 6906 at commit [`dce2432`](https://github.com/apache/spark/commit/dce2432a21310c6feffd5d6bad3de99c7138c71f). --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
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[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user mengxr commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113580828 ok to test --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user AmplabJenkins commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113541966 Can one of the admins verify this patch? --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
Github user srowen commented on the pull request: https://github.com/apache/spark/pull/6906#issuecomment-113545058 OK to test --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
[GitHub] spark pull request: [SPARK-8481] [MLlib] GaussianMixtureModel pred...
GitHub user dkobylarz opened a pull request: https://github.com/apache/spark/pull/6906 [SPARK-8481] [MLlib] GaussianMixtureModel predict accepting single vector This PR addresses the issue I have just reported. After taking a look at the code It seemed trivial to implement. You can merge this pull request into a Git repository by running: $ git pull https://github.com/dkobylarz/spark branch-1.4 Alternatively you can review and apply these changes as the patch at: https://github.com/apache/spark/pull/6906.patch To close this pull request, make a commit to your master/trunk branch with (at least) the following in the commit message: This closes #6906 commit dce2432a21310c6feffd5d6bad3de99c7138c71f Author: Dariusz Kobylarz Date: 2015-06-19T15:01:22Z [SPARK-8481] [MLlib] GaussianMixtureModel predict accepting single vector --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes so, or if the feature is enabled but not working, please contact infrastructure at infrastruct...@apache.org or file a JIRA ticket with INFRA. --- - To unsubscribe, e-mail: reviews-unsubscr...@spark.apache.org For additional commands, e-mail: reviews-h...@spark.apache.org
