[Bug 3099] Please parallelize filesystem scan

2015-07-17 Thread samba-bugs
https://bugzilla.samba.org/show_bug.cgi?id=3099

--- Comment #8 from Chip Schweiss c...@innovates.com ---
I would argue that optionally all directory scanning should be made parallel.  
Modern file systems perform best when request queues are kept full.  The
current mode of rsync scanning directories does nothing to take advantage of
this.   

I currently use scripts to split a couple dozen or so rsync jobs in to
literally 100's of jobs.   This reduces execution time from what would be days
to a couple hours every night.   There are lots of scripts like this appearing
on the net because the current state of rsync is inadequate.  

This ticket could reasonably combined with 5124.

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Re: [Bug 3099] Please parallelize filesystem scan

2015-07-17 Thread Ken Chase
I dont understand - scanning metadata is sped up by thrashing the head
all over the disk instead of mostly-sequentially scanning through?

How does that work out?

/kc


On Fri, Jul 17, 2015 at 02:37:21PM +, samba-b...@samba.org said:
  https://bugzilla.samba.org/show_bug.cgi?id=3099
  
  --- Comment #8 from Chip Schweiss c...@innovates.com ---
  I would argue that optionally all directory scanning should be made 
parallel.  
  Modern file systems perform best when request queues are kept full.  The
  current mode of rsync scanning directories does nothing to take advantage of
  this.   
  
  I currently use scripts to split a couple dozen or so rsync jobs in to
  literally 100's of jobs.   This reduces execution time from what would be 
days
  to a couple hours every night.   There are lots of scripts like this 
appearing
  on the net because the current state of rsync is inadequate.  
  
  This ticket could reasonably combined with 5124.
  
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-- 
Ken Chase - k...@heavycomputing.ca skype:kenchase23 Toronto Canada
Heavy Computing - Clued bandwidth, colocation and managed linux VPS @151 Front 
St. W.

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[Bug 3099] Please parallelize filesystem scan

2015-07-17 Thread samba-bugs
https://bugzilla.samba.org/show_bug.cgi?id=3099

--- Comment #7 from Rainer rai...@voigt-home.net ---
Hi,

I'm experiencing the very same problem: I'm trying to sync a set of VMWare disk
files (about 2.5TB) with not too many changes, and direct copying is still
faster than the checksumming by a quite large margin because of the sequential
checksumming on source and target just doubles the time needed.

I think the point is that the GigE link between the PC and the NAS achieves
about 80MB/s, and the HDD read rate is not much higher (approx. 130MB/s). 

When doing the checksumming on source and target in parallel we could ideally
(if nothing changed) reach the read rate of the HDDs as 'transfer' bandwidth,
because this is the speed at which we can verify that the data is the same on
source and target. The sequential approach like it is now reduces the initial
check to half the HDD read rate, so transfering unchanged files will only yield
about 65MB/s in my case, which is slower than simple copying.

Is this patch you proposed some years ago something I can apply to and try on a
current rsync version? If not, could you update it to the 3.1.x version so I
can benchmark the parallel checksumming in my situation?

Best Regards
Rainer

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Re: [Bug 3099] Please parallelize filesystem scan

2015-07-17 Thread Ken Chase
Sounds to me like maintaining the metadata cache is important - and tuning the
filesystem to do so would be more beneficial than caching writes, especially
with a backup target where a write already written will likely never be read
again (and isnt a big deal if it is since so few files are changed compared to
the total # of inodes to scan).

Your report of the minutes for the re-sync shows the unthrashed cache is highly
valuable. So all we need to do is tune the backup target (and even the 
operational
servers themselves) to maintain more metadata. I dont know how much ram is used
per inode, but I'd throw in another 4-8gb just for metadata caching per box, or
even more, if it meant scanning was sped up.

(Really, actually, one only needs it in the backup target - if you can run all
the backups in parallel, and there's N servers to backup, they can all run at 
1/N
speed, as long as scanning metadata on the backup target is fast enough to keep
up with it all -- my total data written is only 20-30GB for example, which at 
reasonable
speed (20-30MB/s even, which is slow) is only 15 minutes total writing. Even 
200-300GB
changed would be 150 minutes at that rate, and the rate could easily be 4x 
faster.

So, tuning caches to prefer metadata seems to be key. How?

As we've discussed before, letting the filesystem at it throws away precious
metadata cache, and so tracking your own changes (since the backup system will 
never
be used for anything else, right? :) would be beneficial. Of course the danger
is using the backup system for anything else and changing any of the target 
info -
inconsistencies would crop up and make the backup worthless very quickly.

/kc

On Fri, Jul 17, 2015 at 03:18:02PM +, Schweiss, Chip said:
  Modern file systems have many internal queues, and service many clients 
simultaneously.  They arrange their work to maximize throughput in both read 
and write operations.This is the norm on any enterprise file system, be it 
Hitachi, Oracle, Dell, HP, Isilon, etc.  You will get significantly higher 
throughput if you hit it with multiple threads.   These systems have elaborate 
predictive read ahead caches and perform best when multiple threads hit them.
  
  Using the test case of a single server with a simple file system such as 
ext3/4, or xfs, no gains will be seen in multithreading rsync.   Use an 
enterprise file system with 100's of TBs and the more threads you use the 
faster you will go.   Metadata and data on these systems ends up across 100's 
of disks.   Single threads end up severely bound by latency.  This is why 
multi-threading should be optional.  It doesn't help everyone.
  
  For example, one of my rsync jobs moving from a ZFS system in St. Louis, 
Missouri to a Hitachi HNAS in Minneapolis, Minnesota has over 100 million 
files.   Each day 50 to 100 thousand files get added or updated.   A single 
rsync job would take weeks to parse this job and send the changes.   I split it 
into 120 jobs and it typically completes in 2 hours when no humans are using 
the systems.   A re-sync immediately afterwards, again with 120 jobs, scans 
both ends in minutes.
  
  -Chip
  
  -Original Message-
  From: rsync [mailto:rsync-boun...@lists.samba.org] On Behalf Of Ken Chase
  Sent: Friday, July 17, 2015 9:51 AM
  To: samba-b...@samba.org
  Cc: rsync...@samba.org
  Subject: Re: [Bug 3099] Please parallelize filesystem scan
  
  I dont understand - scanning metadata is sped up by thrashing the head
  all over the disk instead of mostly-sequentially scanning through?
  
  How does that work out?
  
  /kc
  
  
  On Fri, Jul 17, 2015 at 02:37:21PM +, samba-b...@samba.org said:
https://bugzilla.samba.org/show_bug.cgi?id=3099

--- Comment #8 from Chip Schweiss c...@innovates.com ---
I would argue that optionally all directory scanning should be made 
parallel.
Modern file systems perform best when request queues are kept full.  The
current mode of rsync scanning directories does nothing to take advantage 
of
this.

I currently use scripts to split a couple dozen or so rsync jobs in to
literally 100's of jobs.   This reduces execution time from what would be 
days
to a couple hours every night.   There are lots of scripts like this 
appearing
on the net because the current state of rsync is inadequate.

This ticket could reasonably combined with 5124.

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  Heavy Computing - Clued bandwidth, colocation and managed linux VPS @151 
Front St. W.
  
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Re: clone a disk

2015-07-17 Thread Larry Irwin (gmail)

Hi TG,
You can keep an up-to-date copy of the files/folders/pipes/etc. in the 
100GB space using rsync, but not a true clone of the partition.
To get a true clone of the boot partition, you'd need to boot from a 
rescue CD, mount the other machine's 100GB space and dd the boot 
partition device to a file on the 100GB space.
You'd also probably want to get the Master Boot Record by grabbing the 
first 2K of the raw boot device into a separate file...

i.e. something like:
dd bs=512 if=/dev/sda1 of=/mnt/u/backup/jessie_sda1
dd bs=512 count=4 if=/dev/sda of=/mnt/u/backup/jessie_mbr_sda
The device names might be different - the mount folder may be different 
- etc...
But the idea works. - With a new, blank drive, you could recreate the 
partitions using fdisk, reverse the dd commands, boot and then work on 
getting the second partition back up and running.


--
Larry Irwin

On 07/17/2015 01:40 PM, Thierry Granier wrote:

Hello
i have a machine A with 2 disks 1 et 2 running Debian Jessie
on 1 is the system and the boot and the swap
on 2 different partitions like /home /opt ETC.

i have a machine B with 1 disk running kali-linux and *100G free*

Can i clone the disk 1 of machine A on the 100G free on machine B with 
rsync?


If it is possible, how to do that?
Many thanks
TG




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Re: clone a disk

2015-07-17 Thread Simon Hobson
Thierry Granier th.gran...@free.fr wrote:

 i have a machine A with 2 disks 1 et 2 running Debian Jessie
 on 1 is the system and the boot and the swap
 on 2 different partitions like /home /opt ETC.
 
 i have a machine B with 1 disk running kali-linux and 100G free
 
 Can i clone the disk 1 of machine A on the 100G free on machine B with rsync?
 
 If it is possible, how to do that?

Yes, it's easy to do, I do that for the primary backup on all my systems.

Lets say you are doing it from machine a, and backing up to directory /backup_a 
on b. Logged in as root then you could do it with :
rsync -avH --delete --exclude-from=/etc/rsync_excludes / root@b:/backup_a/
-a means archive and sets several parameters, v simply makes things verbose, 
H means correctly handle hard linked files. --delete means delete files from 
the destination that have been removed from the source, and --exclude-from 
specifies a file containing a list of exclusions to omit.
You need to exclude a bunch of stuff, things like /dev/*, /proc/*, /sys/*, and 
so on. You can also exclude things you don't want to copy such as log files.

However, this is interactive and also needs permission to log in as root on the 
destination (which I block for security). Far better, for regular backups, to 
use rsync as a service on the destination which only needs a few more steps.

Also note that trailing /s on source and destination are significant. 
root@b:/backup_a/ will produce different results to root@b:/backup_a !


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clone a disk

2015-07-17 Thread Thierry Granier

Hello
i have a machine A with 2 disks 1 et 2 running Debian Jessie
on 1 is the system and the boot and the swap
on 2 different partitions like /home /opt ETC.

i have a machine B with 1 disk running kali-linux and *100G free*

Can i clone the disk 1 of machine A on the 100G free on machine B with 
rsync?


If it is possible, how to do that?
Many thanks
TG
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Re: [Bug 3099] Please parallelize filesystem scan

2015-07-17 Thread ray vantassle
Ken, this just happens to be a special case where your configuration has a
huge number of spindles.  If you have multiple threads reading the same
spindle you'll just be thrashing the heads back  forth.  If there is one
thread reading at the front of the disk and another thread reading at the
end of the disk, it will be *slower* that if you have just one thread
reading first the front of the disk and then the end of the disk.  Two
threads will just have the head whipping back and forth.

one of my rsync jobs moving from a ZFS system ... has over 100 million
files
Spreads over how many spindles?

The problem is, the optimum way to access the disks depends on how the data
lies on the disks.  And that's something that a mere program cannot know.
Only the filesystem can know that information.  Whether it's ext4, md,
brtfs, zfs, or whatever -- a program like rsync cannot possibly know how
best to access the disk(s) and with how many simultaneous threads.
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Re: clone a disk

2015-07-17 Thread Kevin Korb
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

This is good info for backing up the MBR (which includes the partition
table).

However, if you are going to image a partition use either ddrescue
(does the same thing but has a status screen, can resume, and works
around read errors) or partimage (has a status screen and it
understands (most) filesystems so it can leave the empty space sparse).

On 07/17/2015 02:48 PM, Larry Irwin (gmail) wrote:
 Hi TG, You can keep an up-to-date copy of the
 files/folders/pipes/etc. in the 100GB space using rsync, but not a
 true clone of the partition. To get a true clone of the boot
 partition, you'd need to boot from a rescue CD, mount the other
 machine's 100GB space and dd the boot partition device to a file on
 the 100GB space. You'd also probably want to get the Master Boot
 Record by grabbing the first 2K of the raw boot device into a
 separate file... i.e. something like: dd bs=512 if=/dev/sda1
 of=/mnt/u/backup/jessie_sda1 dd bs=512 count=4 if=/dev/sda
 of=/mnt/u/backup/jessie_mbr_sda The device names might be different
 - the mount folder may be different - etc... But the idea works. -
 With a new, blank drive, you could recreate the partitions using
 fdisk, reverse the dd commands, boot and then work on getting the
 second partition back up and running.
 
 -- Larry Irwin
 
 On 07/17/2015 01:40 PM, Thierry Granier wrote:
 Hello i have a machine A with 2 disks 1 et 2 running Debian
 Jessie on 1 is the system and the boot and the swap on 2
 different partitions like /home /opt ETC.
 
 i have a machine B with 1 disk running kali-linux and *100G
 free*
 
 Can i clone the disk 1 of machine A on the 100G free on machine B
 with rsync?
 
 If it is possible, how to do that? Many thanks TG
 
 
 
 
 

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~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,
- -*~
Kevin Korb  Phone:(407) 252-6853
Systems Administrator   Internet:
FutureQuest, Inc.   ke...@futurequest.net  (work)
Orlando, Floridak...@sanitarium.net (personal)
Web page:   http://www.sanitarium.net/
PGP public key available on web site.
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Re: clone a disk

2015-07-17 Thread Kevin Korb
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

I would add --numeric-ids and --itemize-changes.  Up to you if you
need --xattrs or --acls.

Also, I prefer to do backups by filesystem so I would add
- --one-file-system and run one rsync per filesystem.  This means you
don't have to exclude things like /proc and /dev and any random thing
that isn't normally connected but sometimes is but it also means you
have to list all the filesystems that you do want to backup.

On 07/17/2015 02:21 PM, Simon Hobson wrote:
 Thierry Granier th.gran...@free.fr wrote:
 
 i have a machine A with 2 disks 1 et 2 running Debian Jessie on 1
 is the system and the boot and the swap on 2 different partitions
 like /home /opt ETC.
 
 i have a machine B with 1 disk running kali-linux and 100G free
 
 Can i clone the disk 1 of machine A on the 100G free on machine B
 with rsync?
 
 If it is possible, how to do that?
 
 Yes, it's easy to do, I do that for the primary backup on all my
 systems.
 
 Lets say you are doing it from machine a, and backing up to
 directory /backup_a on b. Logged in as root then you could do it
 with : rsync -avH --delete --exclude-from=/etc/rsync_excludes /
 root@b:/backup_a/ -a means archive and sets several parameters, v
 simply makes things verbose, H means correctly handle hard linked
 files. --delete means delete files from the destination that have
 been removed from the source, and --exclude-from specifies a file
 containing a list of exclusions to omit. You need to exclude a
 bunch of stuff, things like /dev/*, /proc/*, /sys/*, and so on. You
 can also exclude things you don't want to copy such as log files.
 
 However, this is interactive and also needs permission to log in as
 root on the destination (which I block for security). Far better,
 for regular backups, to use rsync as a service on the destination
 which only needs a few more steps.
 
 Also note that trailing /s on source and destination are
 significant. root@b:/backup_a/ will produce different results to
 root@b:/backup_a !
 
 

- -- 
~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,
- -*~
Kevin Korb  Phone:(407) 252-6853
Systems Administrator   Internet:
FutureQuest, Inc.   ke...@futurequest.net  (work)
Orlando, Floridak...@sanitarium.net (personal)
Web page:   http://www.sanitarium.net/
PGP public key available on web site.
~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,-*~'`^`'~*-,._.,
- -*~
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