[sage-combinat-devel] Re: Terminated jobs on combinat server?

[Keith Clawson]

I can explain what happened -- I was finishing up an upgrade of the scratch 
drive and some of the processes that were using scratch were accidentally 
killed instead of stopped. Sorry! I tried to email the affected users, but 
I had trouble finding current email addresses. If anyone needs to make sure 
they get contacted about things like this, you can verify that running 
'finger username' on combinat returns a current address, and you can 
contact me if you need it updated.

Thanks,
Keith Clawson
kclaw...@uw.edu

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

Re: [sage-combinat-devel] combinat queue failed to apply to sage-5.10.rc2

[Jeff]

Anne,
It is fixed. Thanks!
Jeff

On Tuesday, June 18, 2013 7:06:25 PM UTC-4, Anne Schilling wrote:
>
> Hi Jeff, 
>
> The conflict should be fixed now. 
>
> Nicolas, I folded the NSM review patch, so please pull from the queue 
> before working on it 
> further! 
>
> Best, 
>
> Anne 
>
> On 6/18/13 3:30 PM, Jeff wrote: 
> > I cannot get the combinat queue to apply. Any suggestions? 
> > 
> > applying finiteenumset_random_improve-fh.patch 
> > skipping trac_8386_iet_alphabet_bug-vd.patch - guarded by '+disabled' 
> > skipping trac_8388_pickling_path-vd.patch - guarded by '+disabled' 
> > applying missing-doc-includes-nt.patch 
> > applying dyck_word_to_binary_tree-fh.patch 
> > skipping trac_12453-refactor_integer_vectors-ts.patch - guarded by 
> '+disabled' 
> > applying trac_14102-nonsymmetric-macdonald.patch 
> > applying trac_14102-review-as.patch 
> > patching file 
> sage/combinat/root_system/non_symmetric_macdonald_polynomials.py 
> > Hunk #6 FAILED at 413 
> > 1 out of 6 hunks FAILED -- saving rejects to file 
> sage/combinat/root_system/non_symmetric_macdonald_polynomials.py.rej 
> > patch failed, unable to continue (try -v) 
> > patch failed, rejects left in working dir 
> > errors during apply, please fix and refresh trac_14102-review-as.patch 
> > Abort 
> > 
> > 
> > Jeff 
>

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

Re: [sage-combinat-devel] combinat queue failed to apply to sage-5.10.rc2

[Anne Schilling]

Hi Jeff,

The conflict should be fixed now.

Nicolas, I folded the NSM review patch, so please pull from the queue before 
working on it
further!

Best,

Anne

On 6/18/13 3:30 PM, Jeff wrote:
> I cannot get the combinat queue to apply. Any suggestions?
> 
> applying finiteenumset_random_improve-fh.patch
> skipping trac_8386_iet_alphabet_bug-vd.patch - guarded by '+disabled'
> skipping trac_8388_pickling_path-vd.patch - guarded by '+disabled'
> applying missing-doc-includes-nt.patch
> applying dyck_word_to_binary_tree-fh.patch
> skipping trac_12453-refactor_integer_vectors-ts.patch - guarded by '+disabled'
> applying trac_14102-nonsymmetric-macdonald.patch
> applying trac_14102-review-as.patch
> patching file sage/combinat/root_system/non_symmetric_macdonald_polynomials.py
> Hunk #6 FAILED at 413
> 1 out of 6 hunks FAILED -- saving rejects to file 
> sage/combinat/root_system/non_symmetric_macdonald_polynomials.py.rej
> patch failed, unable to continue (try -v)
> patch failed, rejects left in working dir
> errors during apply, please fix and refresh trac_14102-review-as.patch
> Abort
> 
> 
> Jeff

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

[sage-combinat-devel] combinat queue failed to apply to sage-5.10.rc2

[Jeff]

I cannot get the combinat queue to apply. Any suggestions?

applying finiteenumset_random_improve-fh.patch
skipping trac_8386_iet_alphabet_bug-vd.patch - guarded by '+disabled'
skipping trac_8388_pickling_path-vd.patch - guarded by '+disabled'
applying missing-doc-includes-nt.patch
applying dyck_word_to_binary_tree-fh.patch
skipping trac_12453-refactor_integer_vectors-ts.patch - guarded by 
'+disabled'
applying trac_14102-nonsymmetric-macdonald.patch
applying trac_14102-review-as.patch
patching file 
sage/combinat/root_system/non_symmetric_macdonald_polynomials.py
Hunk #6 FAILED at 413
1 out of 6 hunks FAILED -- saving rejects to file 
sage/combinat/root_system/non_symmetric_macdonald_polynomials.py.rej
patch failed, unable to continue (try -v)
patch failed, rejects left in working dir
errors during apply, please fix and refresh trac_14102-review-as.patch
Abort


Jeff


-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

Re: [sage-combinat-devel] Terminated jobs on combinat server?

[Anne Schilling]

Yes, this might be a good idea!

Anne

On 6/18/13 6:24 AM, William Stein wrote:
> We could repartition the new /scratch disk to provide a bigger swap...?
> 
> On Jun 18, 2013 2:00 AM, "Anne Schilling"  > wrote:
> 
> Hi Andrew,
> 
> I also had a large job running on combinat. I just checked and it also 
> seems to have
> disappeared. Too bad! So it might be good to find out what happened!?
> 
> Best,
> 
> Anne
> 
> On 6/17/13 11:29 PM, Florent Hivert wrote:
> >   Hi Andrew,
> >
> >>> I definitely didn't kill them, and the machine hasn't been rebooted in
> >>> 2 months.  Your jobs might have used too much memory and been killed
> >>> by the Linux kernel.
> >>>
> >>> Thanks William, that's probably what happened. I'll try and improve my
> >> memory management!
> >
> > I'm sorry your computation where stopped.
> >
> > I have some extremely CPU intensive computations running on combinat. I
> > designed it to run on the CPU cache so that it needs very few memory: It
> > actually runs on 32 core but take less than a MB of memory. I'm 
> watching it on
> > a regular basis and I remember seeing one of your code which had 
> allocated
> > mode than 30 GB. If there were only one it shouldn't pose any problem on
> > combinat. However, there are some virtual machine running and several 
> other
> > memory eating processes.
> >
> > Cheers,
> >
> > Florent
> 
> --
> You received this message because you are subscribed to the Google Groups 
> "sage-combinat-devel" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to sage-combinat-devel+unsubscr...@googlegroups.com 
> .
> To post to this group, send email to sage-combinat-devel@googlegroups.com 
> .
> Visit this group at http://groups.google.com/group/sage-combinat-devel.
> For more options, visit https://groups.google.com/groups/opt_out.
> 
> 
> -- 
> You received this message because you are subscribed to the Google Groups 
> "sage-combinat-devel" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to sage-combinat-devel+unsubscr...@googlegroups.com.
> To post to this group, send email to sage-combinat-devel@googlegroups.com.
> Visit this group at http://groups.google.com/group/sage-combinat-devel.
> For more options, visit https://groups.google.com/groups/opt_out.

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

Re: [sage-combinat-devel] Terminated jobs on combinat server?

[William Stein]

We could repartition the new /scratch disk to provide a bigger swap...?
On Jun 18, 2013 2:00 AM, "Anne Schilling"  wrote:

> Hi Andrew,
>
> I also had a large job running on combinat. I just checked and it also
> seems to have
> disappeared. Too bad! So it might be good to find out what happened!?
>
> Best,
>
> Anne
>
> On 6/17/13 11:29 PM, Florent Hivert wrote:
> >   Hi Andrew,
> >
> >>> I definitely didn't kill them, and the machine hasn't been rebooted in
> >>> 2 months.  Your jobs might have used too much memory and been killed
> >>> by the Linux kernel.
> >>>
> >>> Thanks William, that's probably what happened. I'll try and improve my
> >> memory management!
> >
> > I'm sorry your computation where stopped.
> >
> > I have some extremely CPU intensive computations running on combinat. I
> > designed it to run on the CPU cache so that it needs very few memory: It
> > actually runs on 32 core but take less than a MB of memory. I'm watching
> it on
> > a regular basis and I remember seeing one of your code which had
> allocated
> > mode than 30 GB. If there were only one it shouldn't pose any problem on
> > combinat. However, there are some virtual machine running and several
> other
> > memory eating processes.
> >
> > Cheers,
> >
> > Florent
>
> --
> You received this message because you are subscribed to the Google Groups
> "sage-combinat-devel" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to sage-combinat-devel+unsubscr...@googlegroups.com.
> To post to this group, send email to sage-combinat-devel@googlegroups.com.
> Visit this group at http://groups.google.com/group/sage-combinat-devel.
> For more options, visit https://groups.google.com/groups/opt_out.
>
>
>

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.

Re: [sage-combinat-devel] Terminated jobs on combinat server?

[Anne Schilling]

Hi Andrew,

I also had a large job running on combinat. I just checked and it also seems to 
have
disappeared. Too bad! So it might be good to find out what happened!?

Best,

Anne

On 6/17/13 11:29 PM, Florent Hivert wrote:
>   Hi Andrew,
> 
>>> I definitely didn't kill them, and the machine hasn't been rebooted in 
>>> 2 months.  Your jobs might have used too much memory and been killed 
>>> by the Linux kernel. 
>>>
>>> Thanks William, that's probably what happened. I'll try and improve my 
>> memory management!
> 
> I'm sorry your computation where stopped.
> 
> I have some extremely CPU intensive computations running on combinat. I
> designed it to run on the CPU cache so that it needs very few memory: It
> actually runs on 32 core but take less than a MB of memory. I'm watching it on
> a regular basis and I remember seeing one of your code which had allocated
> mode than 30 GB. If there were only one it shouldn't pose any problem on
> combinat. However, there are some virtual machine running and several other
> memory eating processes.
> 
> Cheers,
> 
> Florent

-- 
You received this message because you are subscribed to the Google Groups 
"sage-combinat-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to sage-combinat-devel+unsubscr...@googlegroups.com.
To post to this group, send email to sage-combinat-devel@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-combinat-devel.
For more options, visit https://groups.google.com/groups/opt_out.