[sage-devel] Sage-5.0-beta5 build failed on linux
Hi, I am trying to build the latest development version of SAGE on a large multiprocessor dell linux machine, and it failed with the following error message. The error message is rather cryptic, so please let me know if there is any specific architecture/log information you need. Thanks, -Jon =) == patch-2.5.9.p2 Machine: Linux cento.math.princeton.edu.private 2.6.32-220.4.2.el6.x86_64 #1 SMP Tue Feb 14 02:24:11 EST 2012 x86_64 x86_64 x86_64 GNU/Linux Deleting directories from past builds of previous/current versions of patch-2.5.9.p2 Extracting package /scratch/SAGE/sage-5.0.beta5/spkg/standard/patch-2.5.9.p2.spkg ... -rw-r--r--. 1 jonhanke grad 174221 Aug 16 2011 /scratch/SAGE/sage-5.0.beta5/spkg/standard/patch-2.5.9.p2.spkg Finished extraction Host system uname -a: Linux cento.math.princeton.edu.private 2.6.32-220.4.2.el6.x86_64 #1 SMP Tue Feb 14 02:24:11 EST 2012 x86_64 x86_64 x86_64 GNU/Linux CC Version gcc -v Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla--enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC) Error configuring GNU patch real0m0.189s user0m0.041s sys 0m0.098s Error installing package patch-2.5.9.p2 -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
[sage-devel] Help with simple C++/Cython Example
Hi,
I was trying to get the C++ cython example described in the docs (
http://docs.cython.org/src/userguide/wrapping_CPlusPlus.html) to build in
Sage 4.8, but I'm getting some errors I don't understand. I created a
separate development branch called sage-c_extensions, added extension
lines
Extension('sage.quadratic_forms.rectangle',
sources = ['sage/quadratic_forms/rectangle/rectangle.pyx',
'sage/quadratic_forms/rectangle/Rectangle.cpp'],
language = c++),
in the file sage-c_extensions/sage/module_list.py, copied the Rectangle.h
and Rectangle.cpp files from the tutorial into a new
folder sage-c_extensions/sage/quadratic_forms/rectangle/, and created a
rectangle.pyx file in that folder with contents
cdef extern from Rectangle.h namespace shapes:
cdef cppclass Rectangle:
Rectangle(int, int, int, int)
int x0, y0, x1, y1
int getLength()
int getHeight()
int getArea()
void move(int, int)
cdef class PyRectangle:
cdef Rectangle *thisptr # hold a C++ instance which we're wrapping
def __cinit__(self, int x0, int y0, int x1, int y1):
self.thisptr = new Rectangle(x0, y0, x1, y1)
def __dealloc__(self):
del self.thisptr
def getLength(self):
return self.thisptr.getLength()
def getHeight(self):
return self.thisptr.getHeight()
def getArea(self):
return self.thisptr.getArea()
def move(self, dx, dy):
self.thisptr.move(dx, dy)
When I run ./sage -br c_extensions I get the error message
Updating Cython code
Building modified file sage/quadratic_forms/rectangle/rectangle.pyx.
Executing 1 command (using 1 thread)
python `which cython` --cplus --old-style-globals
--disable-function-redefinition --embed-positions --directive
cdivision=True,autotestdict=False,fast_getattr=True
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/devel/sage-c_extensions -o
sage/quadratic_forms/rectangle/rectangle.cpp
sage/quadratic_forms/rectangle/rectangle.pyx
sage/quadratic_forms/rectangle/rectangle.pyx --
/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/lib/python2.6/site-packages//sage/quadratic_forms/rectangle/rectangle.pyx
Time to execute 1 command: 16.2038929462 seconds
Finished compiling Cython code (time = 31.5890960693 seconds)
running install
running build
running build_py
running build_ext
building 'sage.quadratic_forms.rectangle' extension
Executing 1 command (using 1 thread)
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include/csage
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/devel/sage/sage/ext
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include/python2.6 -c
sage/quadratic_forms/rectangle/rectangle.cpp -o
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/rectangle.o
-w
cc1plus: warning: command line option -Wstrict-prototypes is valid for
C/ObjC but not for C++
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include/csage
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/devel/sage/sage/ext
-I/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/include/python2.6 -c
sage/quadratic_forms/rectangle/Rectangle.cpp -o
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/Rectangle.o
-w
cc1plus: warning: command line option -Wstrict-prototypes is valid for
C/ObjC but not for C++
g++ -L/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/lib -bundle -undefined
dynamic_lookup
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/rectangle.o
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/Rectangle.o
-L/Users/jonhanke/Dropbox/SAGE/sage-4.8/local/lib -lcsage -lstdc++ -lntl -o
build/lib.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle.so
ld: duplicate symbol _initrectangle in
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/Rectangle.o
and
build/temp.macosx-10.6-i386-2.6/sage/quadratic_forms/rectangle/rectangle.o
collect2: ld returned 1 exit status
error: command 'g++' failed with exit status 1
sage: There was an error installing modified sage library code.
Any comments are appreciated. Also, it seems that Cython converts the
Rectangle.cpp file to a cythoned file rectangle.cpp, deleting the
original file in the process. Is this normal/ok?
Thanks,
-Jon
=)
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[sage-devel] Build of GMP-ECM fails for sage 4.8 (on a buildbot node)
Hi,
I was trying to build sage-4.8 on a Sun Fire 4450 server (
parsley.math.uga.edu) running Redhat linux and I'm having some issues. It
appears to fail when building GMP-ECM, but I'm a little confused because
this machine is included in the automated buildbot testing framework. I
have included the error message from sage-4.8/spkg/logs/ecm-6.3.p3.log
below. Any comments are appreciated! Thanks,
-Jon
=)
===
jonhanke@[/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8]: make
...
...
...
configure: OpenMP disabled
configure: Memory debugging disabled
make[2]: Entering directory
`/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src'
CDPATH=${ZSH_VERSION+.}: cd . /bin/sh
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src/missing
--run aclocal-1.11 -I m4
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src/missing:
line 52: aclocal-1.11: command not found
WARNING: `aclocal-1.11' is missing on your system. You should only need it
if
you modified `acinclude.m4' or `configure.in'. You might want
to install the `Automake' and `Perl' packages. Grab them from
any GNU archive site.
cd . /bin/sh
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src/missing
--run automake-1.11 --gnu
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src/missing:
line 52: automake-1.11: command not found
WARNING: `automake-1.11' is missing on your system. You should only need
it if
you modified `Makefile.am', `acinclude.m4' or `configure.in'.
You might want to install the `Automake' and `Perl' packages.
Grab them from any GNU archive site.
CDPATH=${ZSH_VERSION+.}: cd . /bin/sh
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src/missing
--run autoconf
aclocal.m4:20: warning: this file was generated for autoconf 2.63.
You have another version of autoconf. It may work, but is not guaranteed
to.
If you have problems, you may need to regenerate the build system entirely.
To do so, use the procedure documented by the package, typically
`autoreconf'.
configure:1535: error: possibly undefined macro: _m4_text_wrap_word
If this token and others are legitimate, please use m4_pattern_allow.
See the Autoconf documentation.
make[2]: *** [configure] Error 1
make[2]: Leaving directory
`/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.8/spkg/build/ecm-6.3.p3/src'
Error building GMP-ECM.
real0m41.358s
user0m5.777s
sys 0m9.857s
Error installing package ecm-6.3.p3
...
...
...
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[sage-devel] Make check fails for sage 4.6.2 build
Hi,
I was building sage 4.6.2 on a Sun Fire 4450 server (called parsley) running
Redhat linux, and the there was a preparser failure when running make check.
Is this something I should be concerned about? I thought that the new sage
builds are automatically tested on this architecture, so how can make check
fail?
Thanks,
-Jon
=)
jonhanke@[~/my_sage_dir/SAGE_parsley_Build_Testing/sage-4.6.2]: make check
...
--
The following tests failed:
sage -t -force_lib devel/sage/sage/misc/preparser.py
Total time for all tests: 6133.0 seconds
Please see /home/jonhanke/.sage//tmp/test.log for the complete log from this
test.
jonhanke@[~/my_sage_dir/SAGE_parsley_Build_Testing/sage-4.6.2]: sage -t
-force_lib devel/sage/sage/misc/preparser.py
sage -t -force_lib devel/sage/sage/misc/preparser.py
Non-default server settings detected:
Incoming Server = http://hg.sagemath.org (default)
Outgoing Server = ssh://
jonha...@sage.math.washington.edu/sage-4.1.1/devel
**
File
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.6.2/devel/sage/sage/misc/preparser.py,
line 1386:
sage: sage.misc.preparser.is_loadable_filename('foo.m')
Expected:
True
Got:
False
**
File
/sage/jonhanke/SAGE_parsley_Build_Testing/sage-4.6.2/devel/sage/sage/misc/preparser.py,
line 1403:
sage: load_attach_path()
Exception raised:
Traceback (most recent call last):
File /usr/local/sage-4.6/local/bin/ncadoctest.py, line 1231, in
run_one_test
self.run_one_example(test, example, filename, compileflags)
File /usr/local/sage-4.6/local/bin/sagedoctest.py, line 38, in
run_one_example
OrigDocTestRunner.run_one_example(self, test, example, filename,
compileflags)
File /usr/local/sage-4.6/local/bin/ncadoctest.py, line 1172, in
run_one_example
compileflags, 1) in test.globs
File doctest __main__.example_19[2], line 1, in module
load_attach_path()###line 1403:
sage: load_attach_path()
NameError: name 'load_attach_path' is not defined
**
...
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[sage-devel] QuadraticForm Impact/Usage information?
Help out a fellow colleague with his promotion file. Have you ever used quadratic forms in Sage? If so, please send me an email at jonha...@gmail.com letting me know, or just respond to this email. Thanks! -Jon =) -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
[sage-devel] Failed to build Atlas in Sage 4.5.2 on Xenon processor.
Hi, I'm trying to build sage 4.5.2 on a Sun Fire X4450 server (Intel Xenon processors) running Redhat linux (Enterprise edition), and get an error when building Atlas in the make script. Any comments are appreciated. Thanks, -Jon =) -- ATLAS install complete. Examine ATLAS/bin/arch/INSTALL_LOG/SUMMARY.LOG for details. make[3]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build' make clean make[3]: Entering directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build' rm -f *.o x* config?.out *core* make[3]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build' make[2]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build' Finished building ATLAS core make[2]: Entering directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build/lib' rm -f libatlas.so liblapack.so make libatlas.so liblapack.so libf77blas.so libcblas.so liblapack.so make[3]: Entering directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build/lib' ld -melf_x86_64 -shared -soname libatlas.so -o libatlas.so \ --whole-archive libatlas.a --no-whole-archive -lc -lm ld -melf_x86_64 -shared -soname liblapack.so -o liblapack.so --whole-archive \ liblapack.a --no-whole-archive make[3]: *** No rule to make target `libf77blas.a', needed by `libf77blas.so'. Stop. make[3]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build/lib' make[2]: *** [shared] Error 2 make[2]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12/ATLAS-build/lib' Building shared ATLAS libraries failed Failed to build ATLAS. real10m24.087s user8m38.823s sys 1m42.460s sage: An error occurred while installing atlas-3.8.3.p12 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /home/jonhanke/sage-4.5.2/install.log. Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12 and type 'make check' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/jonhanke/sage-4.5.2/spkg/build/atlas-3.8.3.p12' '/home/jonhanke/sage-4.5.2/sage' -sh) When you are done debugging, you can type exit to leave the subshell. make[1]: *** [installed/atlas-3.8.3.p12] Error 1 make[1]: Leaving directory `/home/jonhanke/sage-4.5.2/spkg' real17m58.899s user13m25.004s sys 4m22.452s Error building Sage. ./sage -docbuild all html 21 | tee -a dochtml.log python: can't open file '/home/jonhanke/sage-4.5.2/devel/sage/doc/common/builder.py': [Errno 2] No such file or directory -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
[sage-devel] Question about multivariate power series.
Hi, I was wondering if there is (or is planned) support for natural multivariate power series ring constructions (with say fixed precision for each variable) similar to that of polynomal rings? It would be nice to be able to say something like S = PowerSeriesRing(QQ, 'x,y', [15, 20]) or S.x,y = PowerSeriesRing(QQ, [15, 20]) instead of S1.x = PowerSeriesRing(QQ, 15) S.y = PowerSeriesRing(S1, 20) Thanks, -Jon =) --~--~-~--~~~---~--~~ To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Question about Exception Handling in Automated Doctesting
I was wondering if there is a way of passing a doctest which correctly raises an exception? I tried the #random comment, but it doesn't pass with this. I also didn't find anything in the manual at http://www.sagemath.org/doc/developer/conventions.html?highlight=doctest#documentation-strings about how to handle this case. Thanks, -Jon =) --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Trouble building 3.4.1 on Mac Pro
Hi, I'm having trouble with building gmp-mpir in sage 3.4.1 on my Mac Pro. I have previously successfully built 3.1.2 without any difficulty. Any comments are appreciated. Thanks, -Jon =) --- The Hardware overview is Model Name:Mac Pro Model Identifier:MacPro3,1 Processor Name:Quad-Core Intel Xeon Processor Speed:2.8 GHz Number Of Processors:2 Total Number Of Cores:8 L2 Cache (per processor):12 MB Memory:16 GB Bus Speed:1.6 GHz Boot ROM Version:MP31.006C.B05 SMC Version:1.25f4 and the end of the logfile looks like ... gmp-mpir-1.1/src/dumbmp.c gmp-mpir-1.1/src/assert.c gmp-mpir-1.1/src/cpuid.c gmp-mpir-1.1/src/AUTHORS Finished extraction Host system uname -a: Darwin d447-614121.math.uga.edu 9.6.0 Darwin Kernel Version 9.6.0: Mon Nov 24 17:37:00 PST 2008; root:xnu-1228.9.59~1/RELEASE_I386 i386 i386 GCC Version gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include -dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465) Deleting assembly files which depend on PIC assembly working or 32 bit OSX on Intel hardware checking build system type... Invalid configuration `penryn-apple-darwin9.6.0': machine `penryn-apple' not recognized configure: error: /bin/sh ./config.sub penryn-apple-darwin9.6.0 failed Failed to configure. real0m0.637s user0m0.226s sys 0m0.445s sage: An error occurred while installing gmp-mpir-1.1 --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Question about determinants failing over GF(2)
Hi, I'm getting a strange error message in the library that I'm having trouble reproducing at the prompt for determinants over GF(2). The full commands to create the message are below, using the sage in ~jonhanke/sage3.3.rc0_bad directory on the sage.math machine. Thanks, -Jon =) -- | Sage Version 3.3.rc0, Release Date: 2009-02-11 | | Type notebook() for the GUI, and license() for information.| -- sage: sage: sage: MM = matrix(ZZ, 6, 6, [0, 0, 1, 2, 2, 2, 0, 0, 0, 1, 0, 1, 1, 0, 2, 2, 3, 0, 2, 1, 2, 3, 1, 2, 2, 0, 3, 1, 1, 0, 2, 1, 0, 2, 0, 1]) sage: QQ = QuadraticForm(ZZ, 2*MM) sage: QQ.maximal_form() Watson lattice B = [0 0 2 4 4 4] [0 0 0 2 0 2] [2 0 4 4 6 0] [4 2 4 6 2 4] [4 0 6 2 2 0] [4 2 0 4 0 2] pp1 = [2, 3] pp2 = [2, 3] p = 2 small_gram = [15 7 12 6 3 6] [ 7 5 6 6 0 3] [12 6 9 6 3 6] [ 6 6 6 6 0 3] [ 3 0 3 0 0 0] [ 6 3 6 3 0 0] small_gram_det = -81 small_gram_ed = [1, 1, 1, 1, 1, 1] --- TypeError Traceback (most recent call last) /home/jonhanke/.sage/temp/ sage.math.washington.edu/20191/_home_jonhanke__sage_init_sage_0.py in module() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/quadratic_forms/quadratic_form__neighbors.pyc in maximal_form(self) 308 print small_gram_det = , small_gram.det() 309 print small_gram_ed = , small_gram.elementary_divisors() -- 310 Tp = find_basis_of_maximal_isotropic_subspace(matrix(GF(p), small_gram)) 311 TZ = matrix(ZZ,Tp).transpose() * dp_cols_small.transpose() 312 T_huge = T_huge.augment(cofacp*TZ) /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/quadratic_forms/extras.pyc in find_basis_of_maximal_isotropic_subspace(G) 105 106 ## Find one isotropic vector -- 107 v = find_isotropic_vector_at_prime(G) 108 109 ## Check if we're done. /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/quadratic_forms/extras.pyc in find_isotropic_vector_at_prime(G) 38 p = G.parent().base_ring().characteristic() 39 ## Check that G % p is non-degenerate... or allow it an use the kernel. --- 40 G_det = G.det() 41 if G_det == 0: 42 raise NotImplementedError, Must input a non-degenerate matrix over GF(p). /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix2.so in sage.matrix.matrix2.Matrix.det (sage/matrix/matrix2.c:6331)() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix_modn_dense.so in sage.matrix.matrix_modn_dense.Matrix_modn_dense.determinant (sage/matrix/matrix_modn_dense.c:10704)() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix2.so in sage.matrix.matrix2.Matrix.determinant (sage/matrix/matrix2.c:5951)() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix_modn_dense.so in sage.matrix.matrix_modn_dense.Matrix_modn_dense.charpoly (sage/matrix/matrix_modn_dense.c:7109)() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix2.so in sage.matrix.matrix2.Matrix.charpoly (sage/matrix/matrix2.c:7195)() /home/jonhanke/sage-3.3.rc0/local/lib/python2.5/site-packages/sage/matrix/matrix_modn_dense.so in sage.matrix.matrix_modn_dense.Matrix_modn_dense._charpoly_hessenberg (sage/matrix/matrix_modn_dense.c:10131)() TypeError: Cannot convert sage.matrix.matrix_mod2_dense.Matrix_mod2_dense to sage.matrix.matrix_modn_dense.Matrix_modn_dense sage: --- sage: G = matrix(GF(2),[1,1,0,0,1,0, 1,1,0,0,0,1, 0,0,1,0,1,0, 0,0,0,0,0,1, 1,0,1,0,0,0, 0, 1,0,1,0,0 ]) sage: G [1 1 0 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 1 0 0] sage: G = matrix(GF(2),6,6,[1,1,0,0,1,0, 1,1,0,0,0,1, 0,0,1,0,1,0, 0,0,0,0,0,1, 1,0,1,0,0,0, 0, 1,0,1,0,0 ]) sage: G [1 1 0 0 1 0] [1 1 0 0 0 1] [0 0 1 0 1 0] [0 0 0 0 0 1] [1 0 1 0 0 0] [0 1 0 1 0 0] sage: G.det() 1 sage: type(G) type 'sage.matrix.matrix_mod2_dense.Matrix_mod2_dense' sage: G = matrix(ZZ,6,6,[1,1,0,0,1,0, 1,1,0,0,0,1, 0,0,1,0,1,0, 0,0,0,0,0,1, 1,0,1,0,0,0, 0, 1,0,1,0,0 ]) sage: G2 = matrix(GF(2),G) sage: G2.det() 1 sage: --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org
[sage-devel] Sage/Mercurial Merge Question
Hi, I have a question about how to merge patches when they misbehave. I have some development code in a sage 2.8.14 branch which I want to merge to the newest version of sage on another machine (both Macs). To do this I installed mercurial, compiled the new sage, and cloned a new branch from it with the same name as the branch I want to receive the patches. Then on the old machine I set the SAGE_OUTGOING_SERVER variable in my .bashrc file to ssh to the new repository (with the xxx's replaced by an actual IP address) export SAGE_OUTGOING_SERVER=ssh://[EMAIL PROTECTED]//Users/jonhanke/Documents/SAGE/sage-3.1.2/devel ## No trailing '/' here! and did hg_sage.push() while running that branch. The trouble is that this gives some error even though the branches have the same name: abort: push creates new remote branches! (did you forget to merge? use push -f to force) So then I try hg_sage.push(options='-f') which successfully pushes the changes. However when I try to build in the new repository then there are more serious problems [EMAIL PROTECTED]/Documents/SAGE/sage-3.1.2]: sage -br class_number_1 -- sage: Building and installing modified SAGE library files. Installing c_lib scons: `install' is up to date. running install running build running build_py running build_ext running build_scripts running install_lib running install_scripts changing mode of /Users/jonhanke/Documents/SAGE/sage-3.1.2/local/bin/dsage_setup.py to 755 changing mode of /Users/jonhanke/Documents/SAGE/sage-3.1.2/local/bin/dsage_worker.py to 755 changing mode of /Users/jonhanke/Documents/SAGE/sage-3.1.2/local/bin/spkg-debian-maybe to 755 running install_data running install_egg_info Removing /Users/jonhanke/Documents/SAGE/sage-3.1.2/local/lib/python2.5/site-packages/sage-0.0.0-py2.5.egg-info Writing /Users/jonhanke/Documents/SAGE/sage-3.1.2/local/lib/python2.5/site-packages/sage-0.0.0-py2.5.egg-info -- | SAGE Version 3.1.2, Release Date: 2008-09-19 | | Type notebook() for the GUI, and license() for information.| -- Loading SAGE library. Current Mercurial branch is: class_number_1 Non-default server settings detected: Incoming Server = http://www.sagemath.org/hg (default) Outgoing Server = ssh:// [EMAIL PROTECTED]//wtmp/sage-2.8.14/devel sage: hg_sage.status() Getting status of modified or unknown files: cd /Users/jonhanke/Documents/SAGE/sage-3.1.2/devel/sage hg status --- Branch: class_number_1 sage: hg_sage.merge() cd /Users/jonhanke/Documents/SAGE/sage-3.1.2/devel/sage hg merge merging sage/combinat/combinat.py merging sage/ext/cdefs.pxi warning: conflicts during merge. merging sage/ext/cdefs.pxi failed! merging sage/quadratic_forms/binary_qf.py warning: conflicts during merge. merging sage/quadratic_forms/binary_qf.py failed! merging sage/quadratic_forms/genera/genus.py warning: conflicts during merge. merging sage/quadratic_forms/genera/genus.py failed! merging sage/rings/arith.py warning: conflicts during merge. merging sage/rings/arith.py failed! merging sage/rings/integer_mod.pxd merging sage/rings/integer_mod.pyx merging setup.py 23 files updated, 4 files merged, 0 files removed, 4 files unresolved There are unresolved merges, you can redo the full merge using: hg update -C 10552 hg merge 10607 sage: Exiting SAGE (CPU time 0m0.03s, Wall time 0m42.46s). Then I try doing the update and merge it suggests, but it doesn't seem to fix the problem. [EMAIL PROTECTED]/Documents/SAGE/sage-3.1.2/devel/sage-class_number_1]: hg update -C 10552 9 files updated, 0 files merged, 22 files removed, 0 files unresolved [EMAIL PROTECTED]/Documents/SAGE/sage-3.1.2/devel/sage-class_number_1]: hg merge 10607 merging sage/combinat/combinat.py merging sage/ext/cdefs.pxi warning: conflicts during merge. merging sage/ext/cdefs.pxi failed! merging sage/quadratic_forms/binary_qf.py warning: conflicts during merge. merging sage/quadratic_forms/binary_qf.py failed! merging sage/quadratic_forms/genera/genus.py warning: conflicts during merge. merging sage/quadratic_forms/genera/genus.py failed! merging sage/rings/arith.py warning: conflicts during merge. merging sage/rings/arith.py failed! merging sage/rings/integer_mod.pxd merging sage/rings/integer_mod.pyx merging setup.py 23 files updated, 4 files merged, 0 files removed, 4 files unresolved There are unresolved merges, you can redo the full merge using: hg update -C 10552 hg merge 10607 Any idea what's happening? Thanks, -Jon =) --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org
[sage-devel] hg_sage.push() and other minor changes.
Hi All, I noticed that the push() method was missing in sage-2.8.14, so here is a patch. I also added current_branch() and list_branches() for the convenience of those who may want to manage multiple branches simultaneously. I was also interested in being able to have a separate default outgoing repository for convenient backups, but there is an organizational issue here -- SAGE has hardcoded its default branch (on the server) as sage-main, so if one wanted to manage multiple branches from the same repository (as might happen if there were several branches being simultaneously pulled/pushed to on the same server) they will break the default scheme. So I forced the hardcoded default server to use only the main branch (and updated the hardcoded server to be sagemath.org instead of sage.math.washington.edu). For example, suppose one wants to have a server with two branches: sage-main and sage-other on the non-default server math.awesome.edu. Then the way things are coded now, both sage-main would update from sage-main, and sage-other would update from sage-other. If we were connecting to the default sagemath.org, then both branches would update from sage-main. (WARNING TO MAINTAINER: This means that if the default server is changed, one must also explicitly change the DEFAULT_SERVER variable in BRANCH_PATH/sage/misc/hg.py) Finally, I didn't really understand where the default_server was set, so I added support to set them from shell variables SAGE_INCOMING_SERVER and SAGE_OUTGOING_SERVER (with no trailing '/', in mercurial path format to the './devel' directory). However I was careful to preserve the default behavior when no settings are present. Any comments are appreciated! Thanks, -Jon =) P.S. I was a little unsure of where to add the appropriate documentation, so that would be a great comment! =) --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~--- push_bundle__Dec_2_2007.hg Description: Binary data
[sage-devel] Re: hg_sage.push() and other minor changes.
Sorry, but there was a bug. Here's the updated bundle. Thanks, -Jon =) --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~--~~~~--~~--~--~--- push_bundle__Dec_2_2007_ver2.hg Description: Binary data
