[sage-release] Re: Sage 8.9.beta9 released
With a Python 3 build on OS X, I get a sporadic failure in numerical/linear_tensor_element.pyx — it fails not every time, but at least half the time. As far as I can tell, this is due to #27587 (that is, I get failures with 8.9.beta8 + that ticket, but not with 8.9.beta8), but I don't understand why. $ ./sage -t src/sage/numerical/linear_tensor_element.pyx too many failed tests, not using stored timings Running doctests with ID 2019-09-03-15-54-33-30edf809. Git branch: develop Using --optional=build,dochtml,python2,sage Doctesting 1 file. glp_free: memory allocation error Error detected in file env/alloc.c at line 72 0 signals.cpython-37m-darwin.so 0x0001026c50ba print_backtrace + 58 ... [snip] ... 56 libsystem_pthread.dylib 0x7fff667b940d thread_start + 13 Unhandled SIGABRT: An abort() occurred. This probably occurred because a *compiled* module has a bug in it and is not properly wrapped with sig_on(), sig_off(). Python will now terminate. sage -t src/sage/numerical/linear_tensor_element.pyx Killed due to abort ** Tests run before process (pid=20158) failed: sage: mip. = MixedIntegerLinearProgram('ppl') # base ring is QQ ## line 6 ## sage: lt = x[0] * vector([3,4]) + 1; lt ## line 7 ## (1, 1) + (3, 4)*x_0 ... [snip] ... sage: len(list(d)) ## line 467 ## 2 sage: sig_on_count() # check sig_on/off pairings (virtual doctest) ## line 469 ## 0 ** -- sage -t src/sage/numerical/linear_tensor_element.pyx # Killed due to abort -- On Monday, September 2, 2019 at 4:22:40 PM UTC-7, Volker Braun wrote: > > As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > > bdf4b23d74 (trac/develop, tag: 8.9.beta9) Updated SageMath version to > 8.9.beta9 > c631202c12 Trac #28411: refresh the prompt in the installation guide > 45482b13f0 Trac #28387: Implement function that returns the balanced digit > representation of an integer > 4454ffec0d Trac #28384: py2: UnicodeDecodeError in doctest framework > exception handling > 0c8192c3de Trac #28366: Lattice precision timing test fails on Windows 7 > due to low-ish clock resolution > 5e1b351a89 Trac #28274: EnumeratedFamily should use integers as keys > ec9715bb88 Trac #28172: Profile of a Finite Permutation Group > dcf58df8b5 Trac #28154: SciPy: patch for missing coding lines in some > source files > 82d75fd335 Trac #27917: Standardize doctest headers > 04d5aab185 Trac #25817: RuntimeError: Encountered operator mismatch in > maxima-to-sr translation, integrate > 45314bcbcf Trac #23639: Strange errors with roots() of polynomials over > polynomial rings > f29cee985f Trac #28419: new pyflakes miscellanous cleanup > 77bddf472a Trac #28417: removed deprecated stuff in integer_mod > c565a3aa0a Trac #28412: upgrade Pynac to 0.7.26 > 2e47b34ab8 Trac #28408: fixing a few invalid escape sequences > 877d26294b Trac #28407: py3: fix quantum_group_gap and graph_latex > 3db8be3dc0 Trac #28399: remove deprecated things in integer.pyx > 6a837c5ea6 Trac #27818: Meet-subsemilattice for lattices > 2920f66a0e Trac #27798: Add `backend` option to associahedron and flow > polytope > 98f3199887 Trac #27587: Follow up to #25680: Fix tempfile handling in > doctests > 0719be21c2 Trac #27473: Matrix inversion fails over a Laurent series ring > 842a3dcd41 Trac #27444: Expose multithreaded fflas-ffpack features > cee95e6b38 Trac #28404: Sign of hypergeometric motives is sometimes wrong > af8bf5ead8 Trac #28400: fixing a few roles > 1cdf4955c6 Trac #28398: _richcmp_ for quaternion algebra elements > abb2397287 Trac #28397: fix some wrong doctests that were not run > 2465a9e494 Trac #28396: faster Möbius matrix for Hasse diagrams > 4b4b5bf81b Trac #28395: Bug in is_weil_polynomial > 77466c5716 Trac #28393: add self-tests for polymake > a7f0a353e5 Trac #28391: dependencies file for jupymake > e7a3ec0d98 Trac #28377: polymake interface broken with "non-standard" > quadratic fields > a535670711 Trac #28339: Random failure in src/sage/interfaces/expect.py > f34f77e4da Trac #28271: Implement LexM traversal > 304feb1626 Trac #28229: Generalized shifted prime tableau > e570374675 Trac #27689: Implement is_pyramid, is_bipyramid, is_prism for > polytopes > addde7bcc7 Trac #28380: bump up the version of givaro in spkg-configure.m4 > 8f1c30f031 Trac #28403: py3: crypto/block_cipher/present.py doctest > failures > 0ae7ffa669 Trac #25727: Prevent
[sage-release] Re: Sage 8.9.beta9 released
On another maciine (Debian testing running on core i7 + 16 GB RAM), upgrading a Python 3-based Sage 8.9.beta8 to beta9 gives me the same permanent failure of prest-python3, pl;us another (also already reported): charpent@zen-book-flip:/usr/local/sage-P3-2$ sage -t --long --warn-long 157.5 src/sage/graphs/strongly_regular_db.pyx Running doctests with ID 2019-09-03-17-05-16-9c475f15. Git branch: develop Using --optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,python2,sage Doctesting 1 file. sage -t --long --warn-long 157.5 src/sage/graphs/strongly_regular_db.pyx ** File "src/sage/graphs/strongly_regular_db.pyx", line 2324, in sage.graphs.strongly_regular_db.SRG_280_135_70_60 Failed example: g=SRG_280_135_70_60() # long time # optional - gap_packages Exception raised: Traceback (most recent call last): File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/gap.py", line 763, in _eval_line raise RuntimeError("%s produced error output\n%s\n executing %s"%(self, error,line)) RuntimeError: Gap produced error output Error, Record Element: must be a record (not a boolean or fail) executing \$sage1:=AtlasGenerators("J2",2).generators;; During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/expect.py", line 1471, in __init__ self._name = parent._create(value, name=name) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/interface.py", line 491, in _create self.set(name, value) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/gap.py", line 1421, in set self._eval_line(cmd, allow_use_file=True) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/gap.py", line 797, in _eval_line raise RuntimeError(exc) RuntimeError: Gap produced error output Error, Record Element: must be a record (not a boolean or fail) executing \$sage1:=AtlasGenerators("J2",2).generators;; During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1123, in compile_and_execute exec(compiled, globs) File "", line 1, in g=SRG_280_135_70_60() # long time # optional - gap_packages File "sage/graphs/strongly_regular_db.pyx", line 2335, in sage.graphs.strongly_regular_db.SRG_280_135_70_60 (build/cythonized/sage/graphs/strongly_regular_db.c:34133) J2= PermutationGroup(gap('AtlasGenerators("J2",2).generators')) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/interface.py", line 288, in __call__ return cls(self, x, name=name) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/expect.py", line 1476, in __init__ raise_(TypeError, TypeError(*x.args), sys.exc_info()[2]) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/six.py", line 692, in reraise raise value.with_traceback(tb) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/expect.py", line 1471, in __init__ self._name = parent._create(value, name=name) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/interface.py", line 491, in _create self.set(name, value) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/gap.py", line 1421, in set self._eval_line(cmd, allow_use_file=True) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/interfaces/gap.py", line 797, in _eval_line raise RuntimeError(exc) TypeError: Gap produced error output Error, Record Element: must be a record (not a boolean or fail) executing \$sage1:=AtlasGenerators("J2",2).generators;; ** File "src/sage/graphs/strongly_regular_db.pyx", line 2325, in sage.graphs.strongly_regular_db.SRG_280_135_70_60 Failed example: g.is_strongly_regular(parameters=True) # long time # optional - gap_packages Exception raised: Traceback (most recent call last): File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/usr/local/sage-P3-2/local/lib/python3.7/site-packages/sage/doctest/forker.py", line
[sage-release] Re: Sage 8.9.beta9 released
On Debian testing running on core i5 + 8 GB RAM, upgrading a Python 3-based Sage 8.9.beta8 to beta9 gives me one permanent failure of prest-python3, already multireported: charpent@p-202-021:/usr/local/sage-python3$ sage -t --long src/sage/rings/polynomial/polynomial_rational_flint.pyx too many failed tests, not using stored timings Running doctests with ID 2019-09-03-14-30-52-f99cf583. Git branch: develop Using --optional=build,dochtml,dot2tex,fricas,giacpy_sage,memlimit,python2,sage Doctesting 1 file. sage -t --long src/sage/rings/polynomial/polynomial_rational_flint.pyx ** File "src/sage/rings/polynomial/polynomial_rational_flint.pyx", line 2055, in sage.rings.polynomial.polynomial_rational_flint.Polynomial_rational_flint.galois_group Failed example: G = f.galois_group(); G Expected: Transitive group number 5 of degree 4 Got: Exception (FLINT memory_manager). Unable to allocate memory. Transitive group number 5 of degree 4 ** 1 item had failures: 1 of 16 in sage.rings.polynomial.polynomial_rational_flint.Polynomial_rational_flint.galois_group [397 tests, 1 failure, 3.32 s] -- sage -t --long src/sage/rings/polynomial/polynomial_rational_flint.pyx # 1 doctest failed -- Total time for all tests: 3.4 seconds cpu time: 3.3 seconds cumulative wall time: 3.3 seconds HTH, Le mardi 3 septembre 2019 01:22:40 UTC+2, Volker Braun a écrit : > > As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > > bdf4b23d74 (trac/develop, tag: 8.9.beta9) Updated SageMath version to > 8.9.beta9 > c631202c12 Trac #28411: refresh the prompt in the installation guide > 45482b13f0 Trac #28387: Implement function that returns the balanced digit > representation of an integer > 4454ffec0d Trac #28384: py2: UnicodeDecodeError in doctest framework > exception handling > 0c8192c3de Trac #28366: Lattice precision timing test fails on Windows 7 > due to low-ish clock resolution > 5e1b351a89 Trac #28274: EnumeratedFamily should use integers as keys > ec9715bb88 Trac #28172: Profile of a Finite Permutation Group > dcf58df8b5 Trac #28154: SciPy: patch for missing coding lines in some > source files > 82d75fd335 Trac #27917: Standardize doctest headers > 04d5aab185 Trac #25817: RuntimeError: Encountered operator mismatch in > maxima-to-sr translation, integrate > 45314bcbcf Trac #23639: Strange errors with roots() of polynomials over > polynomial rings > f29cee985f Trac #28419: new pyflakes miscellanous cleanup > 77bddf472a Trac #28417: removed deprecated stuff in integer_mod > c565a3aa0a Trac #28412: upgrade Pynac to 0.7.26 > 2e47b34ab8 Trac #28408: fixing a few invalid escape sequences > 877d26294b Trac #28407: py3: fix quantum_group_gap and graph_latex > 3db8be3dc0 Trac #28399: remove deprecated things in integer.pyx > 6a837c5ea6 Trac #27818: Meet-subsemilattice for lattices > 2920f66a0e Trac #27798: Add `backend` option to associahedron and flow > polytope > 98f3199887 Trac #27587: Follow up to #25680: Fix tempfile handling in > doctests > 0719be21c2 Trac #27473: Matrix inversion fails over a Laurent series ring > 842a3dcd41 Trac #27444: Expose multithreaded fflas-ffpack features > cee95e6b38 Trac #28404: Sign of hypergeometric motives is sometimes wrong > af8bf5ead8 Trac #28400: fixing a few roles > 1cdf4955c6 Trac #28398: _richcmp_ for quaternion algebra elements > abb2397287 Trac #28397: fix some wrong doctests that were not run > 2465a9e494 Trac #28396: faster Möbius matrix for Hasse diagrams > 4b4b5bf81b Trac #28395: Bug in is_weil_polynomial > 77466c5716 Trac #28393: add self-tests for polymake > a7f0a353e5 Trac #28391: dependencies file for jupymake > e7a3ec0d98 Trac #28377: polymake interface broken with "non-standard" > quadratic fields > a535670711 Trac #28339: Random failure in src/sage/interfaces/expect.py > f34f77e4da Trac #28271: Implement LexM traversal > 304feb1626 Trac #28229: Generalized shifted prime tableau > e570374675 Trac #27689: Implement is_pyramid, is_bipyramid, is_prism for > polytopes > addde7bcc7 Trac #28380: bump up the version of givaro in spkg-configure.m4 > 8f1c30f031 Trac #28403: py3: crypto/block_cipher/present.py doctest > failures > 0ae7ffa669 Trac #25727: Prevent giac from giving localized output > 109c1bd6c1 Trac #28060: Extensions of finite fields embeddings: we have > inverse image but `inverse_image` throws `NotImplemented` > 0c5c45c0cf Trac #27937: Fix for functorial construction of monoid algebras > fee35bf412 Trac #27851: Convert sqrt(D) to UCF > 3b7ef2c62c Trac #27831: Small fix for is_symmetric for matrices over CDF > 8f76f4d242 Trac #2776
[sage-release] Re: Sage 8.9.beta8 released
On Sage 8.9.beta8, running optional and external tests Using --optional=awali,cbc,cryptominisat,dot2tex,e_antic,external,glucose,memlimit,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,python2,rst2ipynb,sage I get: -- sage -t --long src/sage/databases/oeis.py # 1 doctest failed sage -t --long src/sage/combinat/designs/ext_rep.py # 1 doctest failed sage -t --long src/sage/databases/findstat.py # Timed out -- External software detected for doctesting: ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc Rerunning failed tests, I get: -- sage -t --long src/sage/databases/oeis.py # 1 doctest failed sage -t --long src/sage/databases/findstat.py # Timed out -- External software detected for doctesting: internet Failures are copied below. findstat.py has lots of failures before the timed out test happening at line 2867 Follow up at https://trac.sagemath.org/ticket/25536 sage -t --long src/sage/databases/oeis.py ** File "src/sage/databases/oeis.py", line 90, in sage.databases.oeis Failed example: p.cross_references(fetch=True)# optional -- internet Expected: 0: A000798: Number of different quasi-orders (or topologies, or transitive digraphs) with n labeled elements. 1: A001035: Number of partially ordered sets ("posets") with n labeled elements (or labeled acyclic transitive digraphs). 2: A001930: Number of topologies, or transitive digraphs with n unlabeled nodes. 3: A006057: Number of topologies on n labeled points satisfying axioms T_0-T_4. 4: A079263: Number of constrained mixed models with n factors. 5: A079265: Number of antisymmetric transitive binary relations on n unlabeled points. 6: A263859: Triangle read by rows: T(n,k) (n>=1, k>=0) is the number of posets with n elements and rank k (or depth k+1). Got: 0: A000798: Number of different quasi-orders (or topologies, or transitive digraphs) with n labeled elements. 1: A001035: Number of partially ordered sets ("posets") with n labeled elements (or labeled acyclic transitive digraphs). 2: A001930: Number of topologies, or transitive digraphs with n unlabeled nodes. 3: A006057: Number of topologies on n labeled points satisfying axioms T_0-T_4. 4: A079263: Number of constrained mixed models with n factors. 5: A079265: Number of antisymmetric transitive binary relations on n unlabeled points. 6: A263859: Triangle read by rows: T(n,k) (n>=1, k>=0) is the number of posets with n elements and rank k (or depth k+1). 7: A316978: Number of factorizations of n into factors > 1 with no equivalent primes. 8: A319559: Number of non-isomorphic T_0 set systems of weight n. 9: A326939: Number of T_0 sets of subsets of {1..n} that cover all n vertices. 10: A326943: Number of T_0 sets of subsets of {1..n} that cover all n vertices and are closed under intersection. 11: A326944: Number of T_0 sets of subsets of {1..n} that cover all n vertices, contain {}, and are closed under intersection. 12: A326947: BII-numbers of T_0 set-systems. ** 1 item had failures: 1 of 26 in sage.databases.oeis 5 webbrowser tests not run 0 tests not run because we ran out of time [266 tests, 1 failure, 60.52 s] sage -t --long src/sage/combinat/designs/ext_rep.py ** File "src/sage/combinat/designs/ext_rep.py", line 556, in sage.combinat.designs.ext_rep.open_extrep_url Failed example: s = ext_rep.designs_from_XML_url("http://designtheory.org/database/v-b-k/v3-b6-k2.icgsa.txt.bz2";) # optional - internet Exception raised: Traceback (most recent call last): File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute exec(compiled, globs) File "", line 1, in s = ext_rep.designs_from_XML_url("http://designtheory.org/database/v-b-k/v3-b6-k2.icgsa.txt.bz2";) # optional - internet File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/combinat/designs/ext_rep.py", line 1062, in designs_from_XML_url s = open_extrep_url(url) File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/combinat/designs/ext_rep.py", line 559, in open_extrep_url f = urlopen(url) File "/home/slabbe/GitBox/sage/local/lib/python2.7/url
Re: [sage-release] Sage 8.9.beta9 released
https://trac.sagemath.org/ticket/28271 broke the building of the pdf doc. See https://github.com/cschwan/sage-on-gentoo/issues/549 I’ll have a follow up at some point in the next 24hours. The ticket introduced a unicode “minus” sign at https://github.com/sagemath/sage/blob/develop/src/sage/graphs/traversals.pyx#L1284 > On 3/09/2019, at 5:53 PM, Henri Girard wrote: > > Ubuntu 19.10 (+1) beta, AMD 8x 64 bits 16 Go RAM > > Le 26/08/2019 à 08:18, Henri Girard a écrit : >> Ubuntu 19.10 (+1) beta, AMD 8x 64 bits 16 Go RAM >> >> Compilation ok works fine (from beta 7 to 8) >> >> Le 26/08/2019 à 00:37, Volker Braun a écrit : >>> As always, you can get the latest beta version from the "develop" git >>> branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>> It is nearing the end of the 8.9 merge window, so if you want something >>> merged then this is your last chance. >>> >>> I'm inclined to name the next version 9.0. In particular, we now have >>> Python 3 support that, while not perfect, is at least usable so we should >>> mark that with a new major version. Also point-9 is a natural place to >>> switch. If you want to voice your opinion on that issue: now is the time ;-) >>> >>> >>> 4583b4056e (tag: 8.9.beta8, trac/develop) Updated SageMath version to >>> 8.9.beta8 >>> 6565e63ee9 Trac #28373: new big bag of typos >>> 0052843038 Trac #28297: Small optimizations to arithmetic in number fields >>> of degree > 2 >>> a9f414a6f8 Trac #28057: Adding precision in computing the generators of the >>> period lattice of an elliptic curve. >>> 40c5efa0c8 Trac #28365: Use something instead of time() to ensure Manifold >>> uniqueness in tests >>> bd8504c9e8 Trac #28335: Cythonize Yen_k_shortest_simple_paths and >>> feng_k_shortest_simple_paths >>> c1d5763dc3 Trac #28147: Remove _derivative from Polynomial_template >>> ef1517da96 Trac #28056: Sboxes Maintenance >>> 05bd7671a2 Trac #26098: Implement L-functions using the PARI library >>> c050128f4a Trac #20755: Bug in solve due to a bug in >>> symbolic_expression_from_maxima_string >>> 2a4bfffc48 Trac #28353: var() with single-element list/tuple crashes with >>> unhandled TypeError >>> 0a45dfc784 Trac #28371: py3: errors with optional package CSDP >>> 5ab84a6fb3 Trac #28369: Improve progress report in gitlab-ci >>> a8599952c3 Trac #28367: MR30: Update README.md: -py3 suffix >>> 56f7684a57 Trac #28346: Use dots instead of precision in polynomial_element >>> 8edd3f2797 Trac #28201: small cleanup of databases/cremona >>> 1b7d07b6cc Trac #27573: PRESENT Block Cipher >>> 5f22d242b6 Trac #28321: py3: rationals can not be initialized from a pair >>> of big Python ints >>> b972100c84 Trac #24494: Deprecate set_planar_positions() >>> 42eb5103aa Trac #28364: MR29: Update faq-usage.rst >>> 047992b031 Trac #28361: Implement parameter external_face of layout_planar() >>> ae73a81a59 Trac #28343: Three.js: Support basic mesh plots >>> 7e623eddb1 Trac #28116: Cython 0.29.12 >>> 7508513e65 Trac #28108: Py3: ValueError in graph_generators doctests with >>> plantri optional package >>> a98c0ab16f Trac #28347: Add as_integer_ratio() for Integer, Rational, >>> RealNumber, RealDoubleElement >>> 431187f776 Trac #28344: Fix some issues with submanifolds and improve their >>> documentation >>> 7c0d719021 Trac #28342: spkg-configure.m4 for m4ri, m4rie, givaro >>> 5d6ac68f68 Trac #28228: Semistandard super tableau and standard super >>> tableau for superRSK >>> 7d561d89cf (tag: 8.9.beta7) Updated SageMath version to 8.9.beta7 >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "sage-release" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to sage-release+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/b1182f0f-112b-4f14-b6b8-6eb94f02e1dc%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/95a32695-c787-9ee5-c19b-3baa1d0d9f9d%40gmail.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/1D9C0737-C450-4CA1-9EA1-0D92D9795D12%40gmail.com.