Re: [sage-release] Sage 9.6.rc2 released
On Wed, Apr 27, 2022 at 11:43 AM Dima Pasechnik wrote: > > > > On Wed, 27 Apr 2022, 16:26 David Joyner, wrote: >> >> On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik wrote: >> > >> > This looks like incompatiblity with system-wide nauty (I assume Sage >> > installed its own nauty, right?/ >> > >> > Can you uninstall the system nauty and try again? >> > >> >> I don't see a system-wide nauty. I installed giac 1.6.0 using >> sudo apt install xcas >> but >> ./config.status --recheck && ./config.status >> make >> didn't seem to pick it up. > > > the system wide giac might come with libnauty, no? Anyway, the following are > errors from you log, and they are about > missing symbols in a copy of libnauty.so > in /usr/lib > Thanks Dima for this hint. (And thanks everyone else as well for their emails.) I tried sudo apt remove libnauty2-dev and sudo apt remove xcas then ./config.status --recheck && ./config.status make 5 hours later, the compilation finished without errors. This issue was that I just upgraded ubuntu to 21.10 and that broke my older version of sage. Thanks for the help recompiling. Everything is working fine now. - David Joyner > So you do have it there > > > 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `graph > _free@CLIQUER_1' > 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `cliqu > e_unweighted_find_single@CLIQUER_1' > 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `graph > _new@CLIQUER_1' > > >> >> >> >> >> > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: >> >> >> >> Hi: >> >> >> >> On a Ubuntu 21.10 laptop, I got this: >> >> >> >> The following package(s) may have failed to build (not necessarily >> >> during this run of 'make all-start'): >> >> * package: giac-1.6.0.47p3.p0 >> >> >> >> The log file is attached. >> >> >> >> - David Joyner >> >> >> >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun >> >> wrote: >> >> > >> >> > As always, you can get the latest beta version from the "develop" git >> >> > branch. Alternatively, the self-contained source tarball is at >> >> > http://www.sagemath.org/download-latest.html >> >> > >> >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to >> >> > 9.6.rc2 >> >> > 9b2069cf00 Trac #33747: Fix workflow build.yml >> >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies >> >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a >> >> > dependency >> >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a >> >> > doctest is tagged with # tol >> >> > a68c1a Trac #33729: Latex display of integer mod ring is broken >> >> > 14be90c7b8 Trac #33724: GH Actions: Use >> >> > --enable-download-from-upstream-url in build, doc-build workflows >> >> > 4c9e563885 Trac #33722: symengine: Fix install script >> >> > f1c3da866a Trac #33694: Developer manual: Remove mention of >> >> > SAGE_ROOT/src/module_list.py >> >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output >> >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect >> >> > Vrepresentation >> >> > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's >> >> > Guide >> >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default >> >> > 781a14a17d Trac #33521: doctesting with pytest fails on system install >> >> > of sage >> >> > 79dc3dfb7c Trac #33088: More updates for installation and developer >> >> > guides >> >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin >> >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "sage-release" group. >> >> > To unsubscribe from this group and stop receiving emails from it, send >> >> > an email to sage-release+unsubscr...@googlegroups.com. >> >> > To view this discussion on the web visit >> >> > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. >> >> >> >> -- >> >> You received this message because you are subscribed to the Google Groups >> >> "sage-release" group. >> >> To unsubscribe from this group and stop receiving emails from it, send an >> >> email to sage-release+unsubscr...@googlegroups.com. >> >> To view this discussion on the web visit >> >> https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com. >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-release+unsubscr...@googlegroups.com. >> > To view this discussion on t
Re: [sage-release] Sage 9.6.rc2 released
In that particular case, because giac from the system is used, either the system giac is missing some dependencies or someone broke their system by removing libcliquer without removing nauty itself (which with apt may mean giving the wrong answer to a prompt explaining that you are about to break something). Unless the user explicitly broke their system, I’d say it is a bug in that distribution. > On 28/04/2022, at 08:22, Matthias Köppe wrote: > > There are some undeclared dependencies - see > https://trac.sagemath.org/ticket/31403 > > On Wednesday, April 27, 2022 at 12:43:34 PM UTC-7 François Bissey wrote: > Actually, that means libcliquer is not installed as a dependency of nauty. > Those symbols are supposed to be from libcliquer. > > > On 28/04/2022, at 03:43, Dima Pasechnik wrote: > > > > > > > > On Wed, 27 Apr 2022, 16:26 David Joyner, wrote: > > On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik wrote: > > > > > > This looks like incompatiblity with system-wide nauty (I assume Sage > > > installed its own nauty, right?/ > > > > > > Can you uninstall the system nauty and try again? > > > > > > > I don't see a system-wide nauty. I installed giac 1.6.0 using > > sudo apt install xcas > > but > > ./config.status --recheck && ./config.status > > make > > didn't seem to pick it up. > > > > the system wide giac might come with libnauty, no? Anyway, the following > > are errors from you log, and they are about > > missing symbols in a copy of libnauty.so > > in /usr/lib > > > > So you do have it there > > > > > > 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _free@CLIQUER_1' > > 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `cliqu > > e_unweighted_find_single@CLIQUER_1' > > 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _new@CLIQUER_1' > > > > > > > > > > > > > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: > > >> > > >> Hi: > > >> > > >> On a Ubuntu 21.10 laptop, I got this: > > >> > > >> The following package(s) may have failed to build (not necessarily > > >> during this run of 'make all-start'): > > >> * package: giac-1.6.0.47p3.p0 > > >> > > >> The log file is attached. > > >> > > >> - David Joyner > > >> > > >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun wrote: > > >> > > > >> > As always, you can get the latest beta version from the "develop" git > > >> > branch. Alternatively, the self-contained source tarball is at > > >> > http://www.sagemath.org/download-latest.html > > >> > > > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > > >> > 9.6.rc2 > > >> > 9b2069cf00 Trac #33747: Fix workflow build.yml > > >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > > >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > > >> > dependency > > >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > > >> > doctest is tagged with # tol > > >> > a68c1a Trac #33729: Latex display of integer mod ring is broken > > >> > 14be90c7b8 Trac #33724: GH Actions: Use > > >> > --enable-download-from-upstream-url in build, doc-build workflows > > >> > 4c9e563885 Trac #33722: symengine: Fix install script > > >> > f1c3da866a Trac #33694: Developer manual: Remove mention of > > >> > SAGE_ROOT/src/module_list.py > > >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > > >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > > >> > Vrepresentation > > >> > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's > > >> > Guide > > >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by > > >> > default > > >> > 781a14a17d Trac #33521: doctesting with pytest fails on system install > > >> > of sage > > >> > 79dc3dfb7c Trac #33088: More updates for installation and developer > > >> > guides > > >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on > > >> > Cygwin > > >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > >> > > > >> > -- > > >> > You received this message because you are subscribed to the Google > > >> > Groups "sage-release" group. > > >> > To unsubscribe from this group and stop receiving emails from it, send > > >> > an email to sage-release...@googlegroups.com. > > >> > To view this discussion on the web visit > > >> > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. > > >> > > > >> > > >> -- > > >> You received this message because you are subscribed to the Google > > >> Groups "sage-release" group. > > >> To unsubscribe from this group and stop receiving emails from it, send > > >> an email to sage
Re: [sage-release] Sage 9.6.rc2 released
There are some undeclared dependencies - see https://trac.sagemath.org/ticket/31403 On Wednesday, April 27, 2022 at 12:43:34 PM UTC-7 François Bissey wrote: > Actually, that means libcliquer is not installed as a dependency of nauty. > Those symbols are supposed to be from libcliquer. > > > On 28/04/2022, at 03:43, Dima Pasechnik wrote: > > > > > > > > On Wed, 27 Apr 2022, 16:26 David Joyner, wrote: > > On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik > wrote: > > > > > > This looks like incompatiblity with system-wide nauty (I assume Sage > installed its own nauty, right?/ > > > > > > Can you uninstall the system nauty and try again? > > > > > > > I don't see a system-wide nauty. I installed giac 1.6.0 using > > sudo apt install xcas > > but > > ./config.status --recheck && ./config.status > > make > > didn't seem to pick it up. > > > > the system wide giac might come with libnauty, no? Anyway, the following > are errors from you log, and they are about > > missing symbols in a copy of libnauty.so > > in /usr/lib > > > > So you do have it there > > > > > > 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _free@CLIQUER_1' > > 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `cliqu > > e_unweighted_find_single@CLIQUER_1' > > 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > > -gnu/11/../../../x86_64-linux-gnu/libn > > auty.so: undefined reference to `graph > > _new@CLIQUER_1' > > > > > > > > > > > > > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: > > >> > > >> Hi: > > >> > > >> On a Ubuntu 21.10 laptop, I got this: > > >> > > >> The following package(s) may have failed to build (not necessarily > > >> during this run of 'make all-start'): > > >> * package: giac-1.6.0.47p3.p0 > > >> > > >> The log file is attached. > > >> > > >> - David Joyner > > >> > > >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun > wrote: > > >> > > > >> > As always, you can get the latest beta version from the "develop" > git branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > >> > > > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > 9.6.rc2 > > >> > 9b2069cf00 Trac #33747: Fix workflow build.yml > > >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > > >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing > a dependency > > >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > doctest is tagged with # tol > > >> > a68c1a Trac #33729: Latex display of integer mod ring is broken > > >> > 14be90c7b8 Trac #33724: GH Actions: Use > --enable-download-from-upstream-url in build, doc-build workflows > > >> > 4c9e563885 Trac #33722: symengine: Fix install script > > >> > f1c3da866a Trac #33694: Developer manual: Remove mention of > SAGE_ROOT/src/module_list.py > > >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > > >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > Vrepresentation > > >> > a00769f3a1 Trac #33648: Update/reorder git instructions in > Developer's Guide > > >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by > default > > >> > 781a14a17d Trac #33521: doctesting with pytest fails on system > install of sage > > >> > 79dc3dfb7c Trac #33088: More updates for installation and developer > guides > > >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on > Cygwin > > >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > >> > > > >> > -- > > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-release...@googlegroups.com. > > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com > . > > >> > > >> -- > > >> You received this message because you are subscribed to the Google > Groups "sage-release" group. > > >> To unsubscribe from this group and stop receiving emails from it, > send an email to sage-release...@googlegroups.com. > > >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com > . > > > > > > -- > > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release...@googlegroups.com. > > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com > . > > > > -- > > You received this message be
Re: [sage-release] Sage 9.6.rc2 released
Actually, that means libcliquer is not installed as a dependency of nauty. Those symbols are supposed to be from libcliquer. > On 28/04/2022, at 03:43, Dima Pasechnik wrote: > > > > On Wed, 27 Apr 2022, 16:26 David Joyner, wrote: > On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik wrote: > > > > This looks like incompatiblity with system-wide nauty (I assume Sage > > installed its own nauty, right?/ > > > > Can you uninstall the system nauty and try again? > > > > I don't see a system-wide nauty. I installed giac 1.6.0 using > sudo apt install xcas > but > ./config.status --recheck && ./config.status > make > didn't seem to pick it up. > > the system wide giac might come with libnauty, no? Anyway, the following are > errors from you log, and they are about > missing symbols in a copy of libnauty.so > in /usr/lib > > So you do have it there > > > 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `graph > _free@CLIQUER_1' > 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `cliqu > e_unweighted_find_single@CLIQUER_1' > 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux > -gnu/11/../../../x86_64-linux-gnu/libn > auty.so: undefined reference to `graph > _new@CLIQUER_1' > > > > > > > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: > >> > >> Hi: > >> > >> On a Ubuntu 21.10 laptop, I got this: > >> > >> The following package(s) may have failed to build (not necessarily > >> during this run of 'make all-start'): > >> * package: giac-1.6.0.47p3.p0 > >> > >> The log file is attached. > >> > >> - David Joyner > >> > >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun wrote: > >> > > >> > As always, you can get the latest beta version from the "develop" git > >> > branch. Alternatively, the self-contained source tarball is at > >> > http://www.sagemath.org/download-latest.html > >> > > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > >> > 9.6.rc2 > >> > 9b2069cf00 Trac #33747: Fix workflow build.yml > >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > >> > dependency > >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > >> > doctest is tagged with # tol > >> > a68c1a Trac #33729: Latex display of integer mod ring is broken > >> > 14be90c7b8 Trac #33724: GH Actions: Use > >> > --enable-download-from-upstream-url in build, doc-build workflows > >> > 4c9e563885 Trac #33722: symengine: Fix install script > >> > f1c3da866a Trac #33694: Developer manual: Remove mention of > >> > SAGE_ROOT/src/module_list.py > >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > >> > Vrepresentation > >> > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's > >> > Guide > >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default > >> > 781a14a17d Trac #33521: doctesting with pytest fails on system install > >> > of sage > >> > 79dc3dfb7c Trac #33088: More updates for installation and developer > >> > guides > >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin > >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, send > >> > an email to sage-release+unsubscr...@googlegroups.com. > >> > To view this discussion on the web visit > >> > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. > >> > >> -- > >> You received this message because you are subscribed to the Google Groups > >> "sage-release" group. > >> To unsubscribe from this group and stop receiving emails from it, send an > >> email to sage-release+unsubscr...@googlegroups.com. > >> To view this discussion on the web visit > >> https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com. > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to sage-release+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > > https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroup
Re: [sage-release] Sage 9.6.rc2 released
top-level config.log please On Wednesday, April 27, 2022 at 6:56:58 AM UTC-7 David Joyner wrote: > Hi: > > On a Ubuntu 21.10 laptop, I got this: > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > * package: giac-1.6.0.47p3.p0 > > The log file is attached. > > - David Joyner > > On Mon, Apr 25, 2022 at 6:48 PM Volker Braun wrote: > > > > As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > > > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > 9.6.rc2 > > 9b2069cf00 Trac #33747: Fix workflow build.yml > > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > dependency > > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > doctest is tagged with # tol > > a68c1a Trac #33729: Latex display of integer mod ring is broken > > 14be90c7b8 Trac #33724: GH Actions: Use > --enable-download-from-upstream-url in build, doc-build workflows > > 4c9e563885 Trac #33722: symengine: Fix install script > > f1c3da866a Trac #33694: Developer manual: Remove mention of > SAGE_ROOT/src/module_list.py > > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > Vrepresentation > > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's > Guide > > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default > > 781a14a17d Trac #33521: doctesting with pytest fails on system install > of sage > > 79dc3dfb7c Trac #33088: More updates for installation and developer > guides > > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin > > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/41dfdb1b-0c79-4351-8c3c-a0b8ceaf1e6bn%40googlegroups.com.
Re: [sage-release] Sage 9.6.rc2 released
On Wed, 27 Apr 2022, 16:26 David Joyner, wrote: > On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik wrote: > > > > This looks like incompatiblity with system-wide nauty (I assume Sage > installed its own nauty, right?/ > > > > Can you uninstall the system nauty and try again? > > > > I don't see a system-wide nauty. I installed giac 1.6.0 using > sudo apt install xcas > but > ./config.status --recheck && ./config.status > make > didn't seem to pick it up. > the system wide giac might come with libnauty, no? Anyway, the following are errors from you log, and they are about missing symbols in a copy of libnauty.so in /usr/lib So you do have it there 619 /usr/bin/ld: /usr/lib/gcc/x86_64-linux -gnu/11/../../../x86_64-linux-gnu/libn auty.so: undefined reference to `graph _free@CLIQUER_1' 620 /usr/bin/ld: /usr/lib/gcc/x86_64-linux -gnu/11/../../../x86_64-linux-gnu/libn auty.so: undefined reference to `cliqu e_unweighted_find_single@CLIQUER_1' 621 /usr/bin/ld: /usr/lib/gcc/x86_64-linux -gnu/11/../../../x86_64-linux-gnu/libn auty.so: undefined reference to `graph _new@CLIQUER_1' > > > > > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: > >> > >> Hi: > >> > >> On a Ubuntu 21.10 laptop, I got this: > >> > >> The following package(s) may have failed to build (not necessarily > >> during this run of 'make all-start'): > >> * package: giac-1.6.0.47p3.p0 > >> > >> The log file is attached. > >> > >> - David Joyner > >> > >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun > wrote: > >> > > >> > As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > >> > > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > 9.6.rc2 > >> > 9b2069cf00 Trac #33747: Fix workflow build.yml > >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > dependency > >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > doctest is tagged with # tol > >> > a68c1a Trac #33729: Latex display of integer mod ring is broken > >> > 14be90c7b8 Trac #33724: GH Actions: Use > --enable-download-from-upstream-url in build, doc-build workflows > >> > 4c9e563885 Trac #33722: symengine: Fix install script > >> > f1c3da866a Trac #33694: Developer manual: Remove mention of > SAGE_ROOT/src/module_list.py > >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > Vrepresentation > >> > a00769f3a1 Trac #33648: Update/reorder git instructions in > Developer's Guide > >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by > default > >> > 781a14a17d Trac #33521: doctesting with pytest fails on system > install of sage > >> > 79dc3dfb7c Trac #33088: More updates for installation and developer > guides > >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on > Cygwin > >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-release+unsubscr...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com > . > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release+unsubscr...@googlegroups.com. > >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com > . > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAEQuuAWGP6P2wsjyqJVjCZyO_pWemj5OBFyOXs%2Bt8DUAgEqm-g%40mail.gmail.com > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to
Re: [sage-release] Sage 9.6.rc2 released
On Wed, Apr 27, 2022 at 10:44 AM Dima Pasechnik wrote: > > This looks like incompatiblity with system-wide nauty (I assume Sage > installed its own nauty, right?/ > > Can you uninstall the system nauty and try again? > I don't see a system-wide nauty. I installed giac 1.6.0 using sudo apt install xcas but ./config.status --recheck && ./config.status make didn't seem to pick it up. > On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: >> >> Hi: >> >> On a Ubuntu 21.10 laptop, I got this: >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all-start'): >> * package: giac-1.6.0.47p3.p0 >> >> The log file is attached. >> >> - David Joyner >> >> On Mon, Apr 25, 2022 at 6:48 PM Volker Braun wrote: >> > >> > As always, you can get the latest beta version from the "develop" git >> > branch. Alternatively, the self-contained source tarball is at >> > http://www.sagemath.org/download-latest.html >> > >> > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to 9.6.rc2 >> > 9b2069cf00 Trac #33747: Fix workflow build.yml >> > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies >> > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a >> > dependency >> > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a doctest >> > is tagged with # tol >> > a68c1a Trac #33729: Latex display of integer mod ring is broken >> > 14be90c7b8 Trac #33724: GH Actions: Use >> > --enable-download-from-upstream-url in build, doc-build workflows >> > 4c9e563885 Trac #33722: symengine: Fix install script >> > f1c3da866a Trac #33694: Developer manual: Remove mention of >> > SAGE_ROOT/src/module_list.py >> > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output >> > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect >> > Vrepresentation >> > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's >> > Guide >> > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default >> > 781a14a17d Trac #33521: doctesting with pytest fails on system install of >> > sage >> > 79dc3dfb7c Trac #33088: More updates for installation and developer guides >> > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin >> > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-release+unsubscr...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-release+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAEQuuAWGP6P2wsjyqJVjCZyO_pWemj5OBFyOXs%2Bt8DUAgEqm-g%40mail.gmail.com.
Re: [sage-release] Sage 9.6.rc2 released
This looks like incompatiblity with system-wide nauty (I assume Sage installed its own nauty, right?/ Can you uninstall the system nauty and try again? On Wed, 27 Apr 2022, 14:57 David Joyner, wrote: > Hi: > > On a Ubuntu 21.10 laptop, I got this: > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > * package: giac-1.6.0.47p3.p0 > > The log file is attached. > > - David Joyner > > On Mon, Apr 25, 2022 at 6:48 PM Volker Braun > wrote: > > > > As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > > > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to > 9.6.rc2 > > 9b2069cf00 Trac #33747: Fix workflow build.yml > > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > dependency > > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a > doctest is tagged with # tol > > a68c1a Trac #33729: Latex display of integer mod ring is broken > > 14be90c7b8 Trac #33724: GH Actions: Use > --enable-download-from-upstream-url in build, doc-build workflows > > 4c9e563885 Trac #33722: symengine: Fix install script > > f1c3da866a Trac #33694: Developer manual: Remove mention of > SAGE_ROOT/src/module_list.py > > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > Vrepresentation > > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's > Guide > > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default > > 781a14a17d Trac #33521: doctesting with pytest fails on system install > of sage > > 79dc3dfb7c Trac #33088: More updates for installation and developer > guides > > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin > > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com > . > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq1Ha8zgvRU_H1dCdy_GLy4%2BJ%2B4QHBV2MHssJYS3gN8DZg%40mail.gmail.com.
Re: [sage-release] Sage 9.6.rc2 released
Hi: On a Ubuntu 21.10 laptop, I got this: The following package(s) may have failed to build (not necessarily during this run of 'make all-start'): * package: giac-1.6.0.47p3.p0 The log file is attached. - David Joyner On Mon, Apr 25, 2022 at 6:48 PM Volker Braun wrote: > > As always, you can get the latest beta version from the "develop" git branch. > Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > > 67c34fee1d (trac/develop, tag: 9.6.rc2) Updated SageMath version to 9.6.rc2 > 9b2069cf00 Trac #33747: Fix workflow build.yml > b9dce970ea Trac #33746: Upgrade virtualenv, fix missing dependencies > 8b27cf35a9 Trac #33738: Standard package beautifulsoup4 is missing a > dependency > 7950f93e7c Trac #33588: warnings to ignore are not ignored when a doctest is > tagged with # tol > a68c1a Trac #33729: Latex display of integer mod ring is broken > 14be90c7b8 Trac #33724: GH Actions: Use --enable-download-from-upstream-url > in build, doc-build workflows > 4c9e563885 Trac #33722: symengine: Fix install script > f1c3da866a Trac #33694: Developer manual: Remove mention of > SAGE_ROOT/src/module_list.py > fbe3865362 Trac #33672: python3 spkg-configure.m4: Suppress output > 3285e374b4 Trac #33666: Mutable polyhedron (ppl) saves incorrect > Vrepresentation > a00769f3a1 Trac #33648: Update/reorder git instructions in Developer's Guide > 121b0a8dd6 Trac #33592: do not use temp file with jupyter nb by default > 781a14a17d Trac #33521: doctesting with pytest fails on system install of sage > 79dc3dfb7c Trac #33088: More updates for installation and developer guides > b5a7bd11a3 Trac #33078: Update package info for system python3 on Cygwin > ad69a5b07b (tag: 9.6.rc1) Updated SageMath version to 9.6.rc1 > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/fbf8ad45-310d-46ce-af60-d1f895f68df8n%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAEQuuAWzW1LwEqg7NDOcOAAZN-rbnYsirkzdwi2eZD5W0PT8Eg%40mail.gmail.com. Using cached file /home/wdj/sage+sagedays/sage-9.6.rc2/upstream/giac-1.6.0.47p3.tar.bz2 giac-1.6.0.47p3.p0 Setting up build directory for giac-1.6.0.47p3.p0 Finished extraction Applying patches from ../patches... Applying ../patches/0001-src-global.cc-Do-not-send-SIGINT-to-process-1.patch patching file src/global.cc Applying ../patches/cygwin-icas.patch patching file src/icas.cc Hunk #1 succeeded at 170 (offset 10 lines). Hunk #2 succeeded at 178 (offset 10 lines). Applying ../patches/dirent.patch patching file src/help.cc Hunk #1 succeeded at 66 (offset 14 lines). Hunk #2 succeeded at 1216 (offset 263 lines). Hunk #3 succeeded at 1384 (offset 367 lines). Applying ../patches/isnan-conflict.patch patching file src/global.cc Hunk #1 succeeded at 4263 (offset 124 lines). Hunk #2 succeeded at 4272 (offset 124 lines). Applying ../patches/macos-ifactor.patch patching file src/ifactor.cc Hunk #1 succeeded at 4015 (offset 8 lines). Applying ../patches/nofltk-check.patch patching file check/testgeo patching file check/TP00-sol.cas patching file check/TP00-sol.cas.out1 patching file check/TP02-sol.cas patching file check/TP09-sol.cas patching file check/TP19-sol.cas Applying ../patches/pari_2_11.patch patching file check/TP11-sol.cas.out1 Host system: Linux chekov 5.13.0-40-generic #45-Ubuntu SMP Tue Mar 29 14:48:14 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-sys