[sage-release] Re: Sage 7.5.beta4 released
I've seen the trace.py issue sporadically on the buildbot, too
On Wednesday, November 30, 2016 at 5:47:10 PM UTC+1, Steven Trogdon wrote:
>
> I believe the trace.py issue is
>
> https://trac.sagemath.org/ticket/21258
>
> On Wednesday, November 30, 2016 at 1:23:37 AM UTC-6, Sébastien Labbé wrote:
>>
>> On OSX 10.10.2, I get two errors with make ptestlong (only the one with
>> singular.py reappears on a rerun) :
>>
>> sage -t --long --warn-long 263.5 src/sage/misc/trace.py
>> **
>> File "src/sage/misc/trace.py", line 66, in sage.misc.trace.trace
>> Failed example:
>> print(s.before[s.before.find('--'):])
>> Expected:
>> --...
>> ipdb> c
>> 2 * 5
>> Got:
>> --Return--
>> None
>> >
>> /Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/prompt_toolkit/terminal/vt
>> **
>> 1 item had failures:
>>1 of 10 in sage.misc.trace.trace
>> [9 tests, 1 failure, 10.62 s]
>>
>>
>> sage -t --long --warn-long 263.5 src/sage/interfaces/singular.py
>> **
>> File "src/sage/interfaces/singular.py", line 514, in
>> sage.interfaces.singular.Singular._send_interrupt
>> Failed example:
>> 2*a
>> Exception raised:
>> Traceback (most recent call last):
>> File
>> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>>
>> line 498, in _run
>> self.compile_and_execute(example, compiler, test.globs)
>> File
>> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>>
>> line 861, in compile_and_execute
>> exec(compiled, globs)
>> File "> sage.interfaces.singular.Singular._send_interrupt[3]>", line 1, in
>> Integer(2)*a
>> File "sage/rings/integer.pyx", line 1785, in
>> sage.rings.integer.Integer.__mul__
>> (build/cythonized/sage/rings/integer.c:12539)
>> return coercion_model.bin_op(left, right, operator.mul)
>> File "sage/structure/coerce.pyx", line 1059, in
>> sage.structure.coerce.CoercionModel_cache_maps.bin_op
>> (build/cythonized/sage/structure/coerce.c:9389)
>> raise
>> File "sage/structure/coerce.pyx", line 1055, in
>> sage.structure.coerce.CoercionModel_cache_maps.bin_op
>> (build/cythonized/sage/structure/coerce.c:9327)
>> return PyObject_CallObject(op, xy)
>> File "sage/structure/element.pyx", line 1513, in
>> sage.structure.element.Element.__mul__
>> (build/cythonized/sage/structure/element.c:12399)
>> return (left)._mul_(right)
>> File "sage/structure/element.pyx", line 1554, in
>> sage.structure.element.Element._mul_
>> (build/cythonized/sage/structure/element.c:12733)
>> return python_op(other)
>> File
>> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
>>
>> line 1388, in _mul_
>> return self._operation('*', right)
>> File
>> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
>>
>> line 1267, in _operation
>> raise TypeError(msg)
>> TypeError: Singular error:
>>? `sage126` is not defined
>>? error occurred in or before STDIN line 12: `def sage135=sage127
>> * sage126;`
>> **
>> 1 item had failures:
>>1 of 5 in sage.interfaces.singular.Singular._send_interrupt
>> [390 tests, 1 failure, 9.81 s]
>>
>
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[sage-release] Re: Sage 7.5.beta4 released
I believe the trace.py issue is
https://trac.sagemath.org/ticket/21258
On Wednesday, November 30, 2016 at 1:23:37 AM UTC-6, Sébastien Labbé wrote:
>
> On OSX 10.10.2, I get two errors with make ptestlong (only the one with
> singular.py reappears on a rerun) :
>
> sage -t --long --warn-long 263.5 src/sage/misc/trace.py
> **
> File "src/sage/misc/trace.py", line 66, in sage.misc.trace.trace
> Failed example:
> print(s.before[s.before.find('--'):])
> Expected:
> --...
> ipdb> c
> 2 * 5
> Got:
> --Return--
> None
> >
> /Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/prompt_toolkit/terminal/vt
> **
> 1 item had failures:
>1 of 10 in sage.misc.trace.trace
> [9 tests, 1 failure, 10.62 s]
>
>
> sage -t --long --warn-long 263.5 src/sage/interfaces/singular.py
> **
> File "src/sage/interfaces/singular.py", line 514, in
> sage.interfaces.singular.Singular._send_interrupt
> Failed example:
> 2*a
> Exception raised:
> Traceback (most recent call last):
> File
> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>
> line 498, in _run
> self.compile_and_execute(example, compiler, test.globs)
> File
> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
>
> line 861, in compile_and_execute
> exec(compiled, globs)
> File " sage.interfaces.singular.Singular._send_interrupt[3]>", line 1, in
> Integer(2)*a
> File "sage/rings/integer.pyx", line 1785, in
> sage.rings.integer.Integer.__mul__
> (build/cythonized/sage/rings/integer.c:12539)
> return coercion_model.bin_op(left, right, operator.mul)
> File "sage/structure/coerce.pyx", line 1059, in
> sage.structure.coerce.CoercionModel_cache_maps.bin_op
> (build/cythonized/sage/structure/coerce.c:9389)
> raise
> File "sage/structure/coerce.pyx", line 1055, in
> sage.structure.coerce.CoercionModel_cache_maps.bin_op
> (build/cythonized/sage/structure/coerce.c:9327)
> return PyObject_CallObject(op, xy)
> File "sage/structure/element.pyx", line 1513, in
> sage.structure.element.Element.__mul__
> (build/cythonized/sage/structure/element.c:12399)
> return (left)._mul_(right)
> File "sage/structure/element.pyx", line 1554, in
> sage.structure.element.Element._mul_
> (build/cythonized/sage/structure/element.c:12733)
> return python_op(other)
> File
> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
>
> line 1388, in _mul_
> return self._operation('*', right)
> File
> "/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
>
> line 1267, in _operation
> raise TypeError(msg)
> TypeError: Singular error:
>? `sage126` is not defined
>? error occurred in or before STDIN line 12: `def sage135=sage127 *
> sage126;`
> **
> 1 item had failures:
>1 of 5 in sage.interfaces.singular.Singular._send_interrupt
> [390 tests, 1 failure, 9.81 s]
>
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Re: [sage-release] Re: Sage 7.5.beta4 released
On Nov 29, 2016, at 23:23 , Sébastien Labbé wrote: > On OSX 10.10.2, I get two errors with make ptestlong (only the one with > singular.py reappears on a rerun) : The singular issue has appeared before, and is supposedly fixed by #21865 (the latest release of Singular). The one in trace.py I have not seen, and don't recall seeing. Justin -- Justin C. Walker, Curmudgeon-At-Large Institute for the Absorption of Federal Funds Men are from Earth. Women are from Earth. Deal with it. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
[sage-release] Re: Sage 7.5.beta4 released
On OSX 10.10.2, I get two errors with make ptestlong (only the one with
singular.py reappears on a rerun) :
sage -t --long --warn-long 263.5 src/sage/misc/trace.py
**
File "src/sage/misc/trace.py", line 66, in sage.misc.trace.trace
Failed example:
print(s.before[s.before.find('--'):])
Expected:
--...
ipdb> c
2 * 5
Got:
--Return--
None
>
/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/prompt_toolkit/terminal/vt
**
1 item had failures:
1 of 10 in sage.misc.trace.trace
[9 tests, 1 failure, 10.62 s]
sage -t --long --warn-long 263.5 src/sage/interfaces/singular.py
**
File "src/sage/interfaces/singular.py", line 514, in
sage.interfaces.singular.Singular._send_interrupt
Failed example:
2*a
Exception raised:
Traceback (most recent call last):
File
"/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 498, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 861, in compile_and_execute
exec(compiled, globs)
File "", line 1, in
Integer(2)*a
File "sage/rings/integer.pyx", line 1785, in
sage.rings.integer.Integer.__mul__
(build/cythonized/sage/rings/integer.c:12539)
return coercion_model.bin_op(left, right, operator.mul)
File "sage/structure/coerce.pyx", line 1059, in
sage.structure.coerce.CoercionModel_cache_maps.bin_op
(build/cythonized/sage/structure/coerce.c:9389)
raise
File "sage/structure/coerce.pyx", line 1055, in
sage.structure.coerce.CoercionModel_cache_maps.bin_op
(build/cythonized/sage/structure/coerce.c:9327)
return PyObject_CallObject(op, xy)
File "sage/structure/element.pyx", line 1513, in
sage.structure.element.Element.__mul__
(build/cythonized/sage/structure/element.c:12399)
return (left)._mul_(right)
File "sage/structure/element.pyx", line 1554, in
sage.structure.element.Element._mul_
(build/cythonized/sage/structure/element.c:12733)
return python_op(other)
File
"/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
line 1388, in _mul_
return self._operation('*', right)
File
"/Users/slabbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
line 1267, in _operation
raise TypeError(msg)
TypeError: Singular error:
? `sage126` is not defined
? error occurred in or before STDIN line 12: `def sage135=sage127 *
sage126;`
**
1 item had failures:
1 of 5 in sage.interfaces.singular.Singular._send_interrupt
[390 tests, 1 failure, 9.81 s]
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[sage-release] Re: Sage 7.5.beta4 released
On Tuesday, November 29, 2016 at 11:25:40 AM UTC+1, Sébastien Labbé wrote: > > On Ubuntu 16.04, I get an error building the documentation (even after > make doc-clean && make): > I had uncommited changes in my repo (reverting cython version to 0.24 for testing purposes in #21900). I do not know how this can be related to docbuild errors. But on a clean git repo, the error disappeared on a new run of make doc-clean && make. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
[sage-release] Re: Sage 7.5.beta4 released
On Ubuntu 16.04, I get an error building the documentation (even after make doc-clean && make): [manifolds] /home/labbe/Applications/sage-git/src/doc/en/reference/manifolds/index.rst:4: WARNING: undefined label: tensors-on-free-modules (if the link has no caption the label must precede a section header) [combinat ] writing output... [ 34%] sage/combinat/lyndon_word [combinat ] writing output... [ 34%] sage/combinat/matrices/__init__ [calculus ] reading sources... [100%] sage/symbolic/units Error building the documentation. Traceback (most recent call last): File "/home/labbe/Applications/sage-git/local/lib/python/runpy.py", line 162, in _run_module_as_main "__main__", fname, loader, pkg_name) File "/home/labbe/Applications/sage-git/local/lib/python/runpy.py", line 72, in _run_code exec code in run_globals File "/home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", line 2, in main() File "/home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 1667, in main builder() File "/home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 316, in _wrapper getattr(get_builder(document), 'inventory')(*args, **kwds) File "/home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 510, in _wrapper build_many(build_ref_doc, L) File "/home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 252, in build_many ret = x.get(9) File "/home/labbe/Applications/sage-git/local/lib/python/multiprocessing/pool.py", line 567, in get raise self._value OSError: [manifolds] /home/labbe/Applications/sage-git/local/lib/python2.7/site-packages/sage/manifolds/point.py:docstring of sage.manifolds.point.ManifoldPoint.plot:164: WARNING: Exception occurred in plotting point-3 -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
Re: [sage-release] Re: Sage 7.5.beta4 released
There is really no good way to deal with this besides proper OS packages or rebuild sage from source when you do nontrivial system upgrades. On Sat, Nov 26, 2016 at 11:27 AM Francois Bissey < francois.bis...@canterbury.ac.nz> wrote: > libvpx has stung before. When we upgraded linbox I made sure > it wouldn’t be linked to openCL for sage binaries but made no > provisions for regular builds. > In a way with Gentoo or arch (and SuSE tumbleweed and…) we are > in a unusual position compared to standard distro. Most binary > distros with releases that are not rolling will stick with > a version of the library unless forced to change. > So for them the problem is only when they upgrade to a new release. > For rolling release distro the problem is whenever. > > sage itself cannot really deal very well with the problem, especially > when it relies on some components of the base system. Unless you > go all gentoo-prefix style (and even then I am sure sometimes the base > system creeps in). > > François > > > On 27/11/2016, at 08:11, Steven Trogdon > wrote: > > > > So how is this sort of thing to be dealt with, in general, under Sage? > For example looking at files just under local/lib I see the following libs > that are linked to system libs which presumably would require a rebuild if > system libs were changed > > > > local/lib/libgd.so > > libvpx.so.3 => /usr/lib64/libvpx.so.3 (0x7f7e40c3b000) > > libtiff.so.5 => /usr/lib64/libtiff.so.5 (0x7f7e406cb000) > > libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x7f7e3fc95000) > > local/lib/libzmq.so > > libsodium.so.18 => /usr/lib64/libsodium.so.18 > (0x7f3584ad9000) > > local/lib/liblinbox.so > > libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7fd68e402000) > > local/lib/liblinboxsage.so > > libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7f38cfceb000) > > > > There are lots more of these if local/lib/python2.7 and local/lib/R were > searched. > > > > On Saturday, November 26, 2016 at 12:54:05 AM UTC-6, François wrote: > > After inspection there is a configure switch. It is always on > > in Gentoo. We could configure zeromq in sage to never depend > > on it. Ticket time? > > > > François > > > > > On 26/11/2016, at 19:49, Francois Bissey > wrote: > > > > > > I am guessing it is picked up automagically by zeromq. > > > Sage doesn’t provide it, it was detected from your system. > > > I’ll look into it. > > > > > > François > > > > > >> On 26/11/2016, at 19:46, Steven Trogdon wrote: > > >> > > >> OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has > been a system update between the build of beta3 and beta4. The question is > 'is libsodium.so.18' really needed? > > >> > > >> On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > > >> libsodium is not a sage package so it comes from Gentoo. > > >> libsodium.so.13 was provided by libsodium-1.0.2. > > >> All the other libsodium available in Gentoo provide > > >> libsodium.so.18. > > >> Would you have by chance been doing an upgrade rather > > >> than a build of sage from scratch - and upgraded > > >> libsodium just before the upgrade? > > >> > > >> François > > >> > > >>> On 26/11/2016, at 18:46, Steven Trogdon > wrote: > > >>> > > >>> Fails here on Gentoo when building the docs: > > >>> > > >>> [dochtml] Traceback (most recent call last): > > >>> [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > >>> [dochtml] "__main__", fname, loader, pkg_name) > > >>> [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > >>> [dochtml] exec code in run_globals > > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > line 34, in > > >>> [repl ] from zmq import backend > > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 40, in > > >>> [repl ] reraise(*exc_info) > > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 27, in > > >>> [repl ] _ns = select_backend(first) > > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > line 26, in select_backend > > >>> [repl ] mod = __import__(name, fromlist=public_api) > > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > line 6, in > > >>> [repl ] from . import (constants, error, message, context, > > >>> [repl ] ImportError: libsodium.so.13: cannot open shared object > file: No such file or directory > > >>> [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > >>
Re: [sage-release] Re: Sage 7.5.beta4 released
libvpx has stung before. When we upgraded linbox I made sure it wouldn’t be linked to openCL for sage binaries but made no provisions for regular builds. In a way with Gentoo or arch (and SuSE tumbleweed and…) we are in a unusual position compared to standard distro. Most binary distros with releases that are not rolling will stick with a version of the library unless forced to change. So for them the problem is only when they upgrade to a new release. For rolling release distro the problem is whenever. sage itself cannot really deal very well with the problem, especially when it relies on some components of the base system. Unless you go all gentoo-prefix style (and even then I am sure sometimes the base system creeps in). François > On 27/11/2016, at 08:11, Steven Trogdon wrote: > > So how is this sort of thing to be dealt with, in general, under Sage? For > example looking at files just under local/lib I see the following libs that > are linked to system libs which presumably would require a rebuild if system > libs were changed > > local/lib/libgd.so > libvpx.so.3 => /usr/lib64/libvpx.so.3 (0x7f7e40c3b000) > libtiff.so.5 => /usr/lib64/libtiff.so.5 (0x7f7e406cb000) > libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x7f7e3fc95000) > local/lib/libzmq.so > libsodium.so.18 => /usr/lib64/libsodium.so.18 (0x7f3584ad9000) > local/lib/liblinbox.so > libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7fd68e402000) > local/lib/liblinboxsage.so > libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7f38cfceb000) > > There are lots more of these if local/lib/python2.7 and local/lib/R were > searched. > > On Saturday, November 26, 2016 at 12:54:05 AM UTC-6, François wrote: > After inspection there is a configure switch. It is always on > in Gentoo. We could configure zeromq in sage to never depend > on it. Ticket time? > > François > > > On 26/11/2016, at 19:49, Francois Bissey > > wrote: > > > > I am guessing it is picked up automagically by zeromq. > > Sage doesn’t provide it, it was detected from your system. > > I’ll look into it. > > > > François > > > >> On 26/11/2016, at 19:46, Steven Trogdon wrote: > >> > >> OK, after looking at the logs beta3 was built on 11/17. libsodium was > >> upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has > >> been a system update between the build of beta3 and beta4. The question is > >> 'is libsodium.so.18' really needed? > >> > >> On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > >> libsodium is not a sage package so it comes from Gentoo. > >> libsodium.so.13 was provided by libsodium-1.0.2. > >> All the other libsodium available in Gentoo provide > >> libsodium.so.18. > >> Would you have by chance been doing an upgrade rather > >> than a build of sage from scratch - and upgraded > >> libsodium just before the upgrade? > >> > >> François > >> > >>> On 26/11/2016, at 18:46, Steven Trogdon wrote: > >>> > >>> Fails here on Gentoo when building the docs: > >>> > >>> [dochtml] Traceback (most recent call last): > >>> [dochtml] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > >>> 162, in _run_module_as_main > >>> [dochtml] "__main__", fname, loader, pkg_name) > >>> [dochtml] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > >>> 72, in _run_code > >>> [dochtml] exec code in run_globals > >>> [repl ] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > >>> line 34, in > >>> [repl ] from zmq import backend > >>> [repl ] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > >>> line 40, in > >>> [repl ] reraise(*exc_info) > >>> [repl ] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > >>> line 27, in > >>> [repl ] _ns = select_backend(first) > >>> [repl ] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > >>> line 26, in select_backend > >>> [repl ] mod = __import__(name, fromlist=public_api) > >>> [repl ] File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > >>> line 6, in > >>> [repl ] from . import (constants, error, message, context, > >>> [repl ] ImportError: libsodium.so.13: cannot open shared object file: > >>> No such file or directory > >>> [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > >>> Error building the documentation. > >>> Traceback (most recent call last): > >>> File > >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > >>> 162, in _run_module_as_main > >>>"__main__", fname, loader, pkg_name) > >>>
Re: [sage-release] Re: Sage 7.5.beta4 released
So how is this sort of thing to be dealt with, in general, under Sage? For example looking at files just under local/lib I see the following libs that are linked to system libs which presumably would require a rebuild if system libs were changed local/lib/libgd.so libvpx.so.3 => /usr/lib64/libvpx.so.3 (0x7f7e40c3b000) libtiff.so.5 => /usr/lib64/libtiff.so.5 (0x7f7e406cb000) libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x7f7e3fc95000) local/lib/libzmq.so libsodium.so.18 => /usr/lib64/libsodium.so.18 (0x7f3584ad9000) local/lib/liblinbox.so libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7fd68e402000) local/lib/liblinboxsage.so libOpenCL.so.1 => /usr/lib64/libOpenCL.so.1 (0x7f38cfceb000) There are lots more of these if local/lib/python2.7 and local/lib/R were searched. On Saturday, November 26, 2016 at 12:54:05 AM UTC-6, François wrote: > > After inspection there is a configure switch. It is always on > in Gentoo. We could configure zeromq in sage to never depend > on it. Ticket time? > > François > > > On 26/11/2016, at 19:49, Francois Bissey > wrote: > > > > I am guessing it is picked up automagically by zeromq. > > Sage doesn’t provide it, it was detected from your system. > > I’ll look into it. > > > > François > > > >> On 26/11/2016, at 19:46, Steven Trogdon > wrote: > >> > >> OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has > been a system update between the build of beta3 and beta4. The question is > 'is libsodium.so.18' really needed? > >> > >> On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > >> libsodium is not a sage package so it comes from Gentoo. > >> libsodium.so.13 was provided by libsodium-1.0.2. > >> All the other libsodium available in Gentoo provide > >> libsodium.so.18. > >> Would you have by chance been doing an upgrade rather > >> than a build of sage from scratch - and upgraded > >> libsodium just before the upgrade? > >> > >> François > >> > >>> On 26/11/2016, at 18:46, Steven Trogdon wrote: > >>> > >>> Fails here on Gentoo when building the docs: > >>> > >>> [dochtml] Traceback (most recent call last): > >>> [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > >>> [dochtml] "__main__", fname, loader, pkg_name) > >>> [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > >>> [dochtml] exec code in run_globals > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > >>> [repl ] from zmq import backend > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > >>> [repl ] reraise(*exc_info) > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > >>> [repl ] _ns = select_backend(first) > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > >>> [repl ] mod = __import__(name, fromlist=public_api) > >>> [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > >>> [repl ] from . import (constants, error, message, context, > >>> [repl ] ImportError: libsodium.so.13: cannot open shared object > file: No such file or directory > >>> [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > >>> Error building the documentation. > >>> Traceback (most recent call last): > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > >>>"__main__", fname, loader, pkg_name) > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > >>>exec code in run_globals > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > >>>main() > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > >>>builder() > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > >>>getattr(get_builder(document), 'inventory')(*args, **kwds) > >>> File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > >>>build_many(build_ref_doc, L) > >>> File > "/64b
Re: [sage-release] Re: Sage 7.5.beta4 released
Thanks; this worked. On Saturday, 26 November 2016 09:35:08 UTC+2, Jeroen Demeyer wrote: > > On 2016-11-26 07:38, Peleg Michaeli wrote: > > I have a similar error: > > Not similar. Please try again with > > $ make doc-clean > # make > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
Re: [sage-release] Re: Sage 7.5.beta4 released
Didn't work (same error). Will try make doc-clean. On Saturday, 26 November 2016 09:29:58 UTC+2, François wrote: > > ./sage -p cysignals > then > make > > hopefully that should be enough. > > François > > > On 26/11/2016, at 20:26, Peleg Michaeli > > wrote: > > > > What do you suggest then? make dist-clean..? > > > > On Saturday, 26 November 2016 08:42:59 UTC+2, François wrote: > > Not similar. For some reason your version of cysignals has not > > been upgraded to 1.3.2 - you still have 1.1.x. > > > > François > > > > > On 26/11/2016, at 19:38, Peleg Michaeli wrote: > > > > > > I have a similar error: > > > > > > = > > > > > > [libs ] reading sources... [100%] sage/rings/pari_ring > > > [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > following exception was raised: > > > [libs ] Traceback (most recent call last): > > > [libs ] File > "/home/peleg/sage/src/sage_setup/docbuild/ext/sage_autodoc.py", line 525, > in import_object > > > [libs ] __import__(self.modname) > > > [libs ] ImportError: No module named pselect > > > [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:: WARNING: > document isn't included in any toctree > > > Error building the documentation. > > > Traceback (most recent call last): > > > File "/home/peleg/sage/local/lib/python/runpy.py", line 162, in > _run_module_as_main > > > "__main__", fname, loader, pkg_name) > > > File "/home/peleg/sage/local/lib/python/runpy.py", line 72, in > _run_code > > > exec code in run_globals > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > > main() > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > > builder() > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > > build_many(build_ref_doc, L) > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 266, in build_many > > > results.append(target(arg)) > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 70, in build_ref_doc > > > getattr(ReferenceSubBuilder(doc, lang), format)(*args, **kwds) > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 719, in _wrapper > > > getattr(DocBuilder, build_type)(self, *args, **kwds) > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 104, in f > > > runsphinx() > > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/sphinxbuild.py", > > line 215, in runsphinx > > > raise exception > > > OSError: [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > following exception was raised: > > > > > > > > > = > > > > > > On Saturday, 26 November 2016 07:46:35 UTC+2, Steven Trogdon wrote: > > > Fails here on Gentoo when building the docs: > > > > > > [dochtml] Traceback (most recent call last): > > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > > [dochtml] "__main__", fname, loader, pkg_name) > > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > > [dochtml] exec code in run_globals > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > > [repl ] from zmq import backend > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > > [repl ] reraise(*exc_info) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > > [repl ] _ns = select_backend(first) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > > [repl ] mod = __import__(name, fromlist=public_api) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > > [repl ] from . import (constants, error, messa
Re: [sage-release] Re: Sage 7.5.beta4 released
On 2016-11-26 07:38, Peleg Michaeli wrote: I have a similar error: Not similar. Please try again with $ make doc-clean # make -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
Re: [sage-release] Re: Sage 7.5.beta4 released
./sage -p cysignals then make hopefully that should be enough. François > On 26/11/2016, at 20:26, Peleg Michaeli wrote: > > What do you suggest then? make dist-clean..? > > On Saturday, 26 November 2016 08:42:59 UTC+2, François wrote: > Not similar. For some reason your version of cysignals has not > been upgraded to 1.3.2 - you still have 1.1.x. > > François > > > On 26/11/2016, at 19:38, Peleg Michaeli wrote: > > > > I have a similar error: > > > > = > > > > [libs ] reading sources... [100%] sage/rings/pari_ring > > [libs ] > > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > > following exception was raised: > > [libs ] Traceback (most recent call last): > > [libs ] File > > "/home/peleg/sage/src/sage_setup/docbuild/ext/sage_autodoc.py", line 525, > > in import_object > > [libs ] __import__(self.modname) > > [libs ] ImportError: No module named pselect > > [libs ] > > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:: WARNING: > > document isn't included in any toctree > > Error building the documentation. > > Traceback (most recent call last): > > File "/home/peleg/sage/local/lib/python/runpy.py", line 162, in > > _run_module_as_main > > "__main__", fname, loader, pkg_name) > > File "/home/peleg/sage/local/lib/python/runpy.py", line 72, in _run_code > > exec code in run_globals > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > main() > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > builder() > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > build_many(build_ref_doc, L) > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 266, in build_many > > results.append(target(arg)) > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 70, in build_ref_doc > > getattr(ReferenceSubBuilder(doc, lang), format)(*args, **kwds) > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 719, in _wrapper > > getattr(DocBuilder, build_type)(self, *args, **kwds) > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 104, in f > > runsphinx() > > File > > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/sphinxbuild.py", > > line 215, in runsphinx > > raise exception > > OSError: [libs ] > > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > > following exception was raised: > > > > > > = > > > > On Saturday, 26 November 2016 07:46:35 UTC+2, Steven Trogdon wrote: > > Fails here on Gentoo when building the docs: > > > > [dochtml] Traceback (most recent call last): > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 162, in _run_module_as_main > > [dochtml] "__main__", fname, loader, pkg_name) > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 72, in _run_code > > [dochtml] exec code in run_globals > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > [repl ] from zmq import backend > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > [repl ] reraise(*exc_info) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > [repl ] _ns = select_backend(first) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > [repl ] mod = __import__(name, fromlist=public_api) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > [repl ] from . import (constants, error, message, context, > > [repl ] ImportError: libsodium.so.13: cannot open shared object file: > > No such file or directory > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > Error building the documentation. > >
Re: [sage-release] Re: Sage 7.5.beta4 released
What do you suggest then? make dist-clean..? On Saturday, 26 November 2016 08:42:59 UTC+2, François wrote: > > Not similar. For some reason your version of cysignals has not > been upgraded to 1.3.2 - you still have 1.1.x. > > François > > > On 26/11/2016, at 19:38, Peleg Michaeli > > wrote: > > > > I have a similar error: > > > > = > > > > [libs ] reading sources... [100%] sage/rings/pari_ring > > [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > following exception was raised: > > [libs ] Traceback (most recent call last): > > [libs ] File > "/home/peleg/sage/src/sage_setup/docbuild/ext/sage_autodoc.py", line 525, > in import_object > > [libs ] __import__(self.modname) > > [libs ] ImportError: No module named pselect > > [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:: WARNING: > document isn't included in any toctree > > Error building the documentation. > > Traceback (most recent call last): > > File "/home/peleg/sage/local/lib/python/runpy.py", line 162, in > _run_module_as_main > > "__main__", fname, loader, pkg_name) > > File "/home/peleg/sage/local/lib/python/runpy.py", line 72, in > _run_code > > exec code in run_globals > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > main() > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > builder() > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > build_many(build_ref_doc, L) > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 266, in build_many > > results.append(target(arg)) > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 70, in build_ref_doc > > getattr(ReferenceSubBuilder(doc, lang), format)(*args, **kwds) > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 719, in _wrapper > > getattr(DocBuilder, build_type)(self, *args, **kwds) > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 104, in f > > runsphinx() > > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/sphinxbuild.py", > > line 215, in runsphinx > > raise exception > > OSError: [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: > WARNING: autodoc: failed to import module u'sage.ext.pselect'; the > following exception was raised: > > > > > > = > > > > On Saturday, 26 November 2016 07:46:35 UTC+2, Steven Trogdon wrote: > > Fails here on Gentoo when building the docs: > > > > [dochtml] Traceback (most recent call last): > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > [dochtml] "__main__", fname, loader, pkg_name) > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > [dochtml] exec code in run_globals > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > [repl ] from zmq import backend > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > [repl ] reraise(*exc_info) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > [repl ] _ns = select_backend(first) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > [repl ] mod = __import__(name, fromlist=public_api) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > [repl ] from . import (constants, error, message, context, > > [repl ] ImportError: libsodium.so.13: cannot open shared object > file: No such file or directory > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > Error building the documentation. > > Traceback (most recent call last): > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > "__main__"
Re: [sage-release] Re: Sage 7.5.beta4 released
Yes, this seemed to have done the trick. And a few more packages were then rebuild as well. On Saturday, November 26, 2016 at 12:52:15 AM UTC-6, François wrote: > > Yes, zeromq has no recorded dependencies in sage, so it wasn’t > rebuilt. ./sage -f zeroqm and then make should solve your problem. > > François > > > On 26/11/2016, at 19:50, Steven Trogdon > wrote: > > > > The beta4 build was after doing a `git pull` && `make`. > > > > On Saturday, November 26, 2016 at 12:46:32 AM UTC-6, Steven Trogdon > wrote: > > OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has > been a system update between the build of beta3 and beta4. The question is > 'is libsodium.so.18' really needed? > > > > On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > > libsodium is not a sage package so it comes from Gentoo. > > libsodium.so.13 was provided by libsodium-1.0.2. > > All the other libsodium available in Gentoo provide > > libsodium.so.18. > > Would you have by chance been doing an upgrade rather > > than a build of sage from scratch - and upgraded > > libsodium just before the upgrade? > > > > François > > > > > On 26/11/2016, at 18:46, Steven Trogdon wrote: > > > > > > Fails here on Gentoo when building the docs: > > > > > > [dochtml] Traceback (most recent call last): > > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > > [dochtml] "__main__", fname, loader, pkg_name) > > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > > [dochtml] exec code in run_globals > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > > [repl ] from zmq import backend > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > > [repl ] reraise(*exc_info) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > > [repl ] _ns = select_backend(first) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > > [repl ] mod = __import__(name, fromlist=public_api) > > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > > [repl ] from . import (constants, error, message, context, > > > [repl ] ImportError: libsodium.so.13: cannot open shared object > file: No such file or directory > > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > > Error building the documentation. > > > Traceback (most recent call last): > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > > "__main__", fname, loader, pkg_name) > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > > exec code in run_globals > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > > main() > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > > builder() > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > > build_many(build_ref_doc, L) > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 252, in build_many > > > ret = x.get(9) > > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", > > line 567, in get > > > raise self._value > > > OSError: [repl ] > /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: > > WARNING: autodoc: failed to import module > u'sage.repl.ipython_kernel.kernel'; the following exception was raised: > > > > > > I have libsodium.so.18 install which is current. I don't know which > libsodium I had installed when beta3 was built, but no problem there. Is > libsodium.so.18 really needed? > > > > > > -- > > > You received this message because you are subscribed to the Google
Re: [sage-release] Re: Sage 7.5.beta4 released
After inspection there is a configure switch. It is always on in Gentoo. We could configure zeromq in sage to never depend on it. Ticket time? François > On 26/11/2016, at 19:49, Francois Bissey > wrote: > > I am guessing it is picked up automagically by zeromq. > Sage doesn’t provide it, it was detected from your system. > I’ll look into it. > > François > >> On 26/11/2016, at 19:46, Steven Trogdon wrote: >> >> OK, after looking at the logs beta3 was built on 11/17. libsodium was >> upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has been >> a system update between the build of beta3 and beta4. The question is 'is >> libsodium.so.18' really needed? >> >> On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: >> libsodium is not a sage package so it comes from Gentoo. >> libsodium.so.13 was provided by libsodium-1.0.2. >> All the other libsodium available in Gentoo provide >> libsodium.so.18. >> Would you have by chance been doing an upgrade rather >> than a build of sage from scratch - and upgraded >> libsodium just before the upgrade? >> >> François >> >>> On 26/11/2016, at 18:46, Steven Trogdon wrote: >>> >>> Fails here on Gentoo when building the docs: >>> >>> [dochtml] Traceback (most recent call last): >>> [dochtml] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >>> 162, in _run_module_as_main >>> [dochtml] "__main__", fname, loader, pkg_name) >>> [dochtml] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >>> 72, in _run_code >>> [dochtml] exec code in run_globals >>> [repl ] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", >>> line 34, in >>> [repl ] from zmq import backend >>> [repl ] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", >>> line 40, in >>> [repl ] reraise(*exc_info) >>> [repl ] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", >>> line 27, in >>> [repl ] _ns = select_backend(first) >>> [repl ] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", >>> line 26, in select_backend >>> [repl ] mod = __import__(name, fromlist=public_api) >>> [repl ] File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", >>> line 6, in >>> [repl ] from . import (constants, error, message, context, >>> [repl ] ImportError: libsodium.so.13: cannot open shared object file: >>> No such file or directory >>> [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT >>> Error building the documentation. >>> Traceback (most recent call last): >>> File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", >>> line 162, in _run_module_as_main >>>"__main__", fname, loader, pkg_name) >>> File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", >>> line 72, in _run_code >>>exec code in run_globals >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", >>> line 2, in >>>main() >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >>> line 1667, in main >>>builder() >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >>> line 316, in _wrapper >>>getattr(get_builder(document), 'inventory')(*args, **kwds) >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >>> line 510, in _wrapper >>>build_many(build_ref_doc, L) >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >>> line 252, in build_many >>>ret = x.get(9) >>> File >>> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", >>> line 567, in get >>>raise self._value >>> OSError: [repl ] >>> /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: >>> WARNING: autodoc: failed to import module >>> u'sage.repl.ipython_kernel.kernel'; the following exception was raised: >>> >>> I have libsodium.so.18 install which is current. I don't know which >>> libsodium I had installed when beta3 was built, but no problem there. Is >>> libsodium.so.18 really needed? >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "sage-release" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to sage-release...@googlegroups.com. >>> To post to this group, send ema
Re: [sage-release] Re: Sage 7.5.beta4 released
Yes, zeromq has no recorded dependencies in sage, so it wasn’t rebuilt. ./sage -f zeroqm and then make should solve your problem. François > On 26/11/2016, at 19:50, Steven Trogdon wrote: > > The beta4 build was after doing a `git pull` && `make`. > > On Saturday, November 26, 2016 at 12:46:32 AM UTC-6, Steven Trogdon wrote: > OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has been > a system update between the build of beta3 and beta4. The question is 'is > libsodium.so.18' really needed? > > On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > libsodium is not a sage package so it comes from Gentoo. > libsodium.so.13 was provided by libsodium-1.0.2. > All the other libsodium available in Gentoo provide > libsodium.so.18. > Would you have by chance been doing an upgrade rather > than a build of sage from scratch - and upgraded > libsodium just before the upgrade? > > François > > > On 26/11/2016, at 18:46, Steven Trogdon wrote: > > > > Fails here on Gentoo when building the docs: > > > > [dochtml] Traceback (most recent call last): > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 162, in _run_module_as_main > > [dochtml] "__main__", fname, loader, pkg_name) > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 72, in _run_code > > [dochtml] exec code in run_globals > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > [repl ] from zmq import backend > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > [repl ] reraise(*exc_info) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > [repl ] _ns = select_backend(first) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > [repl ] mod = __import__(name, fromlist=public_api) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > [repl ] from . import (constants, error, message, context, > > [repl ] ImportError: libsodium.so.13: cannot open shared object file: > > No such file or directory > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > Error building the documentation. > > Traceback (most recent call last): > > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > > line 162, in _run_module_as_main > > "__main__", fname, loader, pkg_name) > > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > > line 72, in _run_code > > exec code in run_globals > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > main() > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > builder() > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > build_many(build_ref_doc, L) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 252, in build_many > > ret = x.get(9) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", > > line 567, in get > > raise self._value > > OSError: [repl ] > > /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: > > WARNING: autodoc: failed to import module > > u'sage.repl.ipython_kernel.kernel'; the following exception was raised: > > > > I have libsodium.so.18 install which is current. I don't know which > > libsodium I had installed when beta3 was built, but no problem there. Is > > libsodium.so.18 really needed? > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to sage-release...@googlegroups.com. > > To post to this group, send email to sage-r...@googlegroups.com. > > Visit this group at https://groups.google.com/group
Re: [sage-release] Re: Sage 7.5.beta4 released
The beta4 build was after doing a `git pull` && `make`. On Saturday, November 26, 2016 at 12:46:32 AM UTC-6, Steven Trogdon wrote: > > OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has > been a system update between the build of beta3 and beta4. The question is > 'is libsodium.so.18' really needed? > > On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: >> >> libsodium is not a sage package so it comes from Gentoo. >> libsodium.so.13 was provided by libsodium-1.0.2. >> All the other libsodium available in Gentoo provide >> libsodium.so.18. >> Would you have by chance been doing an upgrade rather >> than a build of sage from scratch - and upgraded >> libsodium just before the upgrade? >> >> François >> >> > On 26/11/2016, at 18:46, Steven Trogdon wrote: >> > >> > Fails here on Gentoo when building the docs: >> > >> > [dochtml] Traceback (most recent call last): >> > [dochtml] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >> 162, in _run_module_as_main >> > [dochtml] "__main__", fname, loader, pkg_name) >> > [dochtml] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >> 72, in _run_code >> > [dochtml] exec code in run_globals >> > [repl ] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", >> >> line 34, in >> > [repl ] from zmq import backend >> > [repl ] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", >> >> line 40, in >> > [repl ] reraise(*exc_info) >> > [repl ] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", >> >> line 27, in >> > [repl ] _ns = select_backend(first) >> > [repl ] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", >> >> line 26, in select_backend >> > [repl ] mod = __import__(name, fromlist=public_api) >> > [repl ] File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", >> >> line 6, in >> > [repl ] from . import (constants, error, message, context, >> > [repl ] ImportError: libsodium.so.13: cannot open shared object >> file: No such file or directory >> > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT >> > Error building the documentation. >> > Traceback (most recent call last): >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >> 162, in _run_module_as_main >> > "__main__", fname, loader, pkg_name) >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line >> 72, in _run_code >> > exec code in run_globals >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", >> >> line 2, in >> > main() >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >> >> line 1667, in main >> > builder() >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >> >> line 316, in _wrapper >> > getattr(get_builder(document), 'inventory')(*args, **kwds) >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >> >> line 510, in _wrapper >> > build_many(build_ref_doc, L) >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >> >> line 252, in build_many >> > ret = x.get(9) >> > File >> "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", >> >> line 567, in get >> > raise self._value >> > OSError: [repl ] >> /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: >> >> WARNING: autodoc: failed to import module >> u'sage.repl.ipython_kernel.kernel'; the following exception was raised: >> > >> > I have libsodium.so.18 install which is current. I don't know which >> libsodium I had installed when beta3 was built, but no problem there. Is >> libsodium.so.18 really needed? >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-release...@googlegroups.com. >> > To post to this group, send email to sage-r...@googlegroups.com. >> > Visit this group at https://groups.google.com/group/sage-release. >> > For more options, visit https://groups.google.com/d/optout. >> >> -- You received this message b
Re: [sage-release] Re: Sage 7.5.beta4 released
I am guessing it is picked up automagically by zeromq. Sage doesn’t provide it, it was detected from your system. I’ll look into it. François > On 26/11/2016, at 19:46, Steven Trogdon wrote: > > OK, after looking at the logs beta3 was built on 11/17. libsodium was > upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has been > a system update between the build of beta3 and beta4. The question is 'is > libsodium.so.18' really needed? > > On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > libsodium is not a sage package so it comes from Gentoo. > libsodium.so.13 was provided by libsodium-1.0.2. > All the other libsodium available in Gentoo provide > libsodium.so.18. > Would you have by chance been doing an upgrade rather > than a build of sage from scratch - and upgraded > libsodium just before the upgrade? > > François > > > On 26/11/2016, at 18:46, Steven Trogdon wrote: > > > > Fails here on Gentoo when building the docs: > > > > [dochtml] Traceback (most recent call last): > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 162, in _run_module_as_main > > [dochtml] "__main__", fname, loader, pkg_name) > > [dochtml] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > > 72, in _run_code > > [dochtml] exec code in run_globals > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > [repl ] from zmq import backend > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > [repl ] reraise(*exc_info) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > [repl ] _ns = select_backend(first) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > [repl ] mod = __import__(name, fromlist=public_api) > > [repl ] File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > [repl ] from . import (constants, error, message, context, > > [repl ] ImportError: libsodium.so.13: cannot open shared object file: > > No such file or directory > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > Error building the documentation. > > Traceback (most recent call last): > > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > > line 162, in _run_module_as_main > > "__main__", fname, loader, pkg_name) > > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > > line 72, in _run_code > > exec code in run_globals > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > main() > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > builder() > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > build_many(build_ref_doc, L) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 252, in build_many > > ret = x.get(9) > > File > > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", > > line 567, in get > > raise self._value > > OSError: [repl ] > > /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: > > WARNING: autodoc: failed to import module > > u'sage.repl.ipython_kernel.kernel'; the following exception was raised: > > > > I have libsodium.so.18 install which is current. I don't know which > > libsodium I had installed when beta3 was built, but no problem there. Is > > libsodium.so.18 really needed? > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to sage-release...@googlegroups.com. > > To post to this group, send email to sage-r...@googlegroups.com. > > Visit this group at https://groups.google.com/group/sage-release. > > For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you ar
Re: [sage-release] Re: Sage 7.5.beta4 released
OK, after looking at the logs beta3 was built on 11/17. libsodium was upgraded from libsodium.so.13 to libsodium.so.18 on 11/18. So there has been a system update between the build of beta3 and beta4. The question is 'is libsodium.so.18' really needed? On Saturday, November 26, 2016 at 12:31:04 AM UTC-6, François wrote: > > libsodium is not a sage package so it comes from Gentoo. > libsodium.so.13 was provided by libsodium-1.0.2. > All the other libsodium available in Gentoo provide > libsodium.so.18. > Would you have by chance been doing an upgrade rather > than a build of sage from scratch - and upgraded > libsodium just before the upgrade? > > François > > > On 26/11/2016, at 18:46, Steven Trogdon > wrote: > > > > Fails here on Gentoo when building the docs: > > > > [dochtml] Traceback (most recent call last): > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > [dochtml] "__main__", fname, loader, pkg_name) > > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > [dochtml] exec code in run_globals > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > > [repl ] from zmq import backend > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > > [repl ] reraise(*exc_info) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > > [repl ] _ns = select_backend(first) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > > [repl ] mod = __import__(name, fromlist=public_api) > > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > > [repl ] from . import (constants, error, message, context, > > [repl ] ImportError: libsodium.so.13: cannot open shared object > file: No such file or directory > > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > > Error building the documentation. > > Traceback (most recent call last): > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > > "__main__", fname, loader, pkg_name) > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > > exec code in run_globals > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > > main() > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > > builder() > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > > getattr(get_builder(document), 'inventory')(*args, **kwds) > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 510, in _wrapper > > build_many(build_ref_doc, L) > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 252, in build_many > > ret = x.get(9) > > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", > > line 567, in get > > raise self._value > > OSError: [repl ] > /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: > > WARNING: autodoc: failed to import module > u'sage.repl.ipython_kernel.kernel'; the following exception was raised: > > > > I have libsodium.so.18 install which is current. I don't know which > libsodium I had installed when beta3 was built, but no problem there. Is > libsodium.so.18 really needed? > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release...@googlegroups.com . > > To post to this group, send email to sage-r...@googlegroups.com > . > > Visit this group at https://groups.google.com/group/sage-release. > > For more options, visit https://groups.google.com/d/optout. > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@goo
Re: [sage-release] Re: Sage 7.5.beta4 released
Not similar. For some reason your version of cysignals has not been upgraded to 1.3.2 - you still have 1.1.x. François > On 26/11/2016, at 19:38, Peleg Michaeli wrote: > > I have a similar error: > > = > > [libs ] reading sources... [100%] sage/rings/pari_ring > [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: WARNING: > autodoc: failed to import module u'sage.ext.pselect'; the following exception > was raised: > [libs ] Traceback (most recent call last): > [libs ] File > "/home/peleg/sage/src/sage_setup/docbuild/ext/sage_autodoc.py", line 525, in > import_object > [libs ] __import__(self.modname) > [libs ] ImportError: No module named pselect > [libs ] /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:: > WARNING: document isn't included in any toctree > Error building the documentation. > Traceback (most recent call last): > File "/home/peleg/sage/local/lib/python/runpy.py", line 162, in > _run_module_as_main > "__main__", fname, loader, pkg_name) > File "/home/peleg/sage/local/lib/python/runpy.py", line 72, in _run_code > exec code in run_globals > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > line 2, in > main() > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 1667, in main > builder() > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 316, in _wrapper > getattr(get_builder(document), 'inventory')(*args, **kwds) > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 510, in _wrapper > build_many(build_ref_doc, L) > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 266, in build_many > results.append(target(arg)) > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 70, in build_ref_doc > getattr(ReferenceSubBuilder(doc, lang), format)(*args, **kwds) > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 719, in _wrapper > getattr(DocBuilder, build_type)(self, *args, **kwds) > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 104, in f > runsphinx() > File > "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/sphinxbuild.py", > line 215, in runsphinx > raise exception > OSError: [libs ] > /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: WARNING: > autodoc: failed to import module u'sage.ext.pselect'; the following exception > was raised: > > > = > > On Saturday, 26 November 2016 07:46:35 UTC+2, Steven Trogdon wrote: > Fails here on Gentoo when building the docs: > > [dochtml] Traceback (most recent call last): > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > [dochtml] "__main__", fname, loader, pkg_name) > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 72, > in _run_code > [dochtml] exec code in run_globals > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > line 34, in > [repl ] from zmq import backend > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 40, in > [repl ] reraise(*exc_info) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 27, in > [repl ] _ns = select_backend(first) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > line 26, in select_backend > [repl ] mod = __import__(name, fromlist=public_api) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > line 6, in > [repl ] from . import (constants, error, message, context, > [repl ] ImportError: libsodium.so.13: cannot open shared object file: No > such file or directory > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > Error building the documentation. > Traceback (most recent call last): > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > line 162, in _run_module_as_main > "__main__", fname, loader, pkg_name) > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > line 72, in _run_code > exec code in run_globals > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > line 2, in > main() > File > "/64bitdev/storage/sage-git_develop/sage/loc
[sage-release] Re: Sage 7.5.beta4 released
I have a similar error: = [libs ] reading sources... [100%] sage/rings/pari_ring [libs ] /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: WARNING: autodoc: failed to import module u'sage.ext.pselect'; the following exception was raised: [libs ] Traceback (most recent call last): [libs ] File "/home/peleg/sage/src/sage_setup/docbuild/ext/sage_autodoc.py", line 525, in import_object [libs ] __import__(self.modname) [libs ] ImportError: No module named pselect [libs ] /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:: WARNING: document isn't included in any toctree Error building the documentation. Traceback (most recent call last): File "/home/peleg/sage/local/lib/python/runpy.py", line 162, in _run_module_as_main "__main__", fname, loader, pkg_name) File "/home/peleg/sage/local/lib/python/runpy.py", line 72, in _run_code exec code in run_globals File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", line 2, in main() File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 1667, in main builder() File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 316, in _wrapper getattr(get_builder(document), 'inventory')(*args, **kwds) File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 510, in _wrapper build_many(build_ref_doc, L) File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 266, in build_many results.append(target(arg)) File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 70, in build_ref_doc getattr(ReferenceSubBuilder(doc, lang), format)(*args, **kwds) File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 719, in _wrapper getattr(DocBuilder, build_type)(self, *args, **kwds) File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 104, in f runsphinx() File "/home/peleg/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/sphinxbuild.py", line 215, in runsphinx raise exception OSError: [libs ] /home/peleg/sage/src/doc/en/reference/libs/sage/ext/pselect.rst:11: WARNING: autodoc: failed to import module u'sage.ext.pselect'; the following exception was raised: = On Saturday, 26 November 2016 07:46:35 UTC+2, Steven Trogdon wrote: > > Fails here on Gentoo when building the docs: > > [dochtml] Traceback (most recent call last): > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > [dochtml] "__main__", fname, loader, pkg_name) > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > [dochtml] exec code in run_globals > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > > line 34, in > [repl ] from zmq import backend > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 40, in > [repl ] reraise(*exc_info) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > > line 27, in > [repl ] _ns = select_backend(first) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > > line 26, in select_backend > [repl ] mod = __import__(name, fromlist=public_api) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > > line 6, in > [repl ] from . import (constants, error, message, context, > [repl ] ImportError: libsodium.so.13: cannot open shared object file: > No such file or directory > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > Error building the documentation. > Traceback (most recent call last): > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > "__main__", fname, loader, pkg_name) > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 72, in _run_code > exec code in run_globals > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > line 2, in > main() > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 1667, in main > builder() > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > line 316, in _wrapper > getattr(get_buil
Re: [sage-release] Re: Sage 7.5.beta4 released
libsodium is not a sage package so it comes from Gentoo. libsodium.so.13 was provided by libsodium-1.0.2. All the other libsodium available in Gentoo provide libsodium.so.18. Would you have by chance been doing an upgrade rather than a build of sage from scratch - and upgraded libsodium just before the upgrade? François > On 26/11/2016, at 18:46, Steven Trogdon wrote: > > Fails here on Gentoo when building the docs: > > [dochtml] Traceback (most recent call last): > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line > 162, in _run_module_as_main > [dochtml] "__main__", fname, loader, pkg_name) > [dochtml] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 72, > in _run_code > [dochtml] exec code in run_globals > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", > line 34, in > [repl ] from zmq import backend > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 40, in > [repl ] reraise(*exc_info) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", > line 27, in > [repl ] _ns = select_backend(first) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", > line 26, in select_backend > [repl ] mod = __import__(name, fromlist=public_api) > [repl ] File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", > line 6, in > [repl ] from . import (constants, error, message, context, > [repl ] ImportError: libsodium.so.13: cannot open shared object file: No > such file or directory > [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT > Error building the documentation. > Traceback (most recent call last): > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > line 162, in _run_module_as_main > "__main__", fname, loader, pkg_name) > File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", > line 72, in _run_code > exec code in run_globals > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > line 2, in > main() > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 1667, in main > builder() > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 316, in _wrapper > getattr(get_builder(document), 'inventory')(*args, **kwds) > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 510, in _wrapper > build_many(build_ref_doc, L) > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > line 252, in build_many > ret = x.get(9) > File > "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", > line 567, in get > raise self._value > OSError: [repl ] > /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: > WARNING: autodoc: failed to import module > u'sage.repl.ipython_kernel.kernel'; the following exception was raised: > > I have libsodium.so.18 install which is current. I don't know which libsodium > I had installed when beta3 was built, but no problem there. Is > libsodium.so.18 really needed? > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To post to this group, send email to sage-release@googlegroups.com. > Visit this group at https://groups.google.com/group/sage-release. > For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
[sage-release] Re: Sage 7.5.beta4 released
Sorry, I meant 'is libsodium.so.13 really needed'? Perhaps something else? -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
[sage-release] Re: Sage 7.5.beta4 released
Fails here on Gentoo when building the docs: [dochtml] Traceback (most recent call last): [dochtml] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 162, in _run_module_as_main [dochtml] "__main__", fname, loader, pkg_name) [dochtml] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 72, in _run_code [dochtml] exec code in run_globals [repl ] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/__init__.py", line 34, in [repl ] from zmq import backend [repl ] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", line 40, in [repl ] reraise(*exc_info) [repl ] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/__init__.py", line 27, in [repl ] _ns = select_backend(first) [repl ] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/select.py", line 26, in select_backend [repl ] mod = __import__(name, fromlist=public_api) [repl ] File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/zmq/backend/cython/__init__.py", line 6, in [repl ] from . import (constants, error, message, context, [repl ] ImportError: libsodium.so.13: cannot open shared object file: No such file or directory [polynomia] reading sources... [ 9%] sage/rings/fraction_field_FpT Error building the documentation. Traceback (most recent call last): File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 162, in _run_module_as_main "__main__", fname, loader, pkg_name) File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/runpy.py", line 72, in _run_code exec code in run_globals File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", line 2, in main() File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 1667, in main builder() File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 316, in _wrapper getattr(get_builder(document), 'inventory')(*args, **kwds) File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 510, in _wrapper build_many(build_ref_doc, L) File "/64bitdev/storage/sage-git_develop/sage/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", line 252, in build_many ret = x.get(9) File "/64bitdev/storage/sage-git_develop/sage/local/lib/python/multiprocessing/pool.py", line 567, in get raise self._value OSError: [repl ] /64bitdev/storage/sage-git_develop/sage/src/doc/en/reference/repl/sage/repl/ipython_kernel/kernel.rst:11: WARNING: autodoc: failed to import module u'sage.repl.ipython_kernel.kernel'; the following exception was raised: I have libsodium.so.18 install which is current. I don't know which libsodium I had installed when beta3 was built, but no problem there. Is libsodium.so.18 really needed? -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
[sage-release] Re: Sage 7.5.beta4 released
Build OK + make ptestlong passed on Ubuntu 16.04 x86_64 Xeon E5-2623 + 16 GB RAM. Eric. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To post to this group, send email to sage-release@googlegroups.com. Visit this group at https://groups.google.com/group/sage-release. For more options, visit https://groups.google.com/d/optout.
