[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread Eric Gourgoulhon
Le jeudi 24 janvier 2019 14:12:23 UTC+1, Eric Gourgoulhon a écrit :
>
>
> I confirm that the Jupyter notebook is broken in this release, both with 
> python2 and python3, as already reported by Sébastien (
> https://groups.google.com/d/msg/sage-release/ULwr6YtMfnY/UpPKqXmxDAAJ), 
> the error message being
>
> ImportError: No module named defusedxml
>  
>

I've opened  https://trac.sagemath.org/ticket/27110 for this. 

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Re: [sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread fchapoton2
installing libffi-dev on the system and doing ./configure fixed the 
problem. Thanks !

Le jeudi 24 janvier 2019 13:45:37 UTC+1, E. Madison Bray a écrit :
>
> On Thu, Jan 24, 2019 at 9:40 AM > wrote: 
> > 
> > I have the same issue with libffi ! 
>
> I will look into that ASAP.  It's a similar / related problem to 
> https://trac.sagemath.org/ticket/26996 but affecting libffi.  The 
> install target for libffi might even depend on your compiler's 
> settings, which might explain why this didn't happen (at least that 
> I'm aware) on Debian-based distros where gcc does not install 
> libraries to ${prefix}/lib64. 
>
> Also, if you have your system's libffi-devel package installed and 
> it's recent enough, Sage's ./configure should detect it and skip 
> trying to install the libffi SPKG altogether. 
>
> > Le jeudi 24 janvier 2019 06:08:53 UTC+1, Steven Trogdon a écrit : 
> >> 
> >> Problem building libffi-3.2.1 on gentoo 
> >> 
> >> cp: cannot overwrite non-directory 
> '/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory 
> '/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'
>  
>
> >> 
>  
> >> Error copying files for libffi-3.2.1. 
> >> 
>  
> >> 
> >> /64bitdev/storage/sage-git_develop/sage/local/./lib64 
> >> 
> >> is a symlink 
> >> 
> >> ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64 
> >> lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 
> /64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib 
> >> 
> >> On Wednesday, January 23, 2019 at 2:47:49 PM UTC-6, Volker Braun wrote: 
> >>> 
> >>> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
> >>> 
> >>> 5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 
> 8.7.beta0 
> >>> 36ec29e57d Trac #26969: Misc pip upgrades 
> >>> 79cf5c980d Trac #27023: fix missing :: 
> >>> a4dd7deefc Trac #27020: OpenBLAS 0.3.5 
> >>> e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics 
> from documentation 
> >>> 4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq 
> >>> c128368a45 Trac #27013: py3: some care for Hadamard matrices 
> >>> 6521233113 Trac #27010: py3: avoid .vertices() in methods 
> _ford_fulkerson, edge_cut, bounded_outdegree_orientation and gomory_hu_tree 
> >>> 58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in 
> method treewidth 
> >>> 1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices 
> >>> 010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx 
> >>> c14dc9c46f Trac #27005: wrong libgap conversion for matrices over 
> QQ['x'] 
> >>> 7123d7504d Trac #27003: _iterator_weight should not sort 
> >>> 48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3 
> >>> 57c5c40661 Trac #26999: 1 optional gurobi doctest failing 
> >>> ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in 
> combinat/posets 
> >>> 23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py 
> >>> 0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23 
> >>> 619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check 
> for validity of kernel polynomials 
> >>> 4f560b02dc Trac #26988: py3: one tiny fix for isidentifier 
> >>> 90c3b31954 Trac #26985: some work on cluster mutation 
> >>> ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning 
> >>> 24186b661f Trac #26967: py3: some work on 
> modular/modform_hecketriangle/ 
> >>> 2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular 
> crashes sage 
> >>> 319b7ac911 Trac #26943: Giac support for term orders and elimination 
> >>> 537b91840d Trac #26938: IncidenceStructure breaks if points cannot be 
> sorted 
> >>> 37065d12db Trac #26936: WordMorphism: domain/codomain should be 
> sortable if not given 
> >>> cdab354eeb Trac #26933: Subsets_s should support unsortable sets 
> >>> 6a818ec5e1 Trac #26917: py3: some fix in set_partition 
> >>> be09cc219f Trac #26864: Indentation error in Number Field 
> >>> a915a3ab1a Trac #26839: RealLazyField: converting constants in an 
> expression to float 
> >>> cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx 
> >>> c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all 
> permutations 
> >>> 52633235e2 Trac #26809: Wrong contains in Permutations avoiding a 
> pattern 
> >>> 33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe 
> >>> faab330692 Trac #26361: Glucose SAT solver 
> >>> ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses 
> >>> 580c25bd1c Trac #26156: 0.0 is printed with too many digits 
> >>> ddfe6f3a20 Trac #25931: changes to partition for k combinat 
> >>> 08166d10a2 Trac #25900: Package libffi 
> >>> 35931ca890 Trac 

[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread Eric Gourgoulhon
On Ubuntu 18.04 running on Xeon E5-2623 + 16 GB RAM:

- python2: 
  - build (-j16) from a fresh git clone OK
  - all tests from ptestlong passed
 
- python3: 
  - build (-j16) from a fresh git clone OK

I confirm that the Jupyter notebook is broken in this release, both with 
python2 and python3, as already reported by Sébastien 
(https://groups.google.com/d/msg/sage-release/ULwr6YtMfnY/UpPKqXmxDAAJ), 
the error message being

ImportError: No module named defusedxml
 
Eric. 

PS: the checksum issues with the mirror www-ftp.lip6.fr seem to have been 
fixed, since it was the mirror used to make the above builds. 

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Re: [sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread E. Madison Bray
On Thu, Jan 24, 2019 at 9:40 AM  wrote:
>
> I have the same issue with libffi !

I will look into that ASAP.  It's a similar / related problem to
https://trac.sagemath.org/ticket/26996 but affecting libffi.  The
install target for libffi might even depend on your compiler's
settings, which might explain why this didn't happen (at least that
I'm aware) on Debian-based distros where gcc does not install
libraries to ${prefix}/lib64.

Also, if you have your system's libffi-devel package installed and
it's recent enough, Sage's ./configure should detect it and skip
trying to install the libffi SPKG altogether.

> Le jeudi 24 janvier 2019 06:08:53 UTC+1, Steven Trogdon a écrit :
>>
>> Problem building libffi-3.2.1 on gentoo
>>
>> cp: cannot overwrite non-directory 
>> '/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory 
>> '/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'
>> 
>> Error copying files for libffi-3.2.1.
>> 
>>
>> /64bitdev/storage/sage-git_develop/sage/local/./lib64
>>
>> is a symlink
>>
>> ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64
>> lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 
>> /64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib
>>
>> On Wednesday, January 23, 2019 at 2:47:49 PM UTC-6, Volker Braun wrote:
>>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> 5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 
>>> 8.7.beta0
>>> 36ec29e57d Trac #26969: Misc pip upgrades
>>> 79cf5c980d Trac #27023: fix missing ::
>>> a4dd7deefc Trac #27020: OpenBLAS 0.3.5
>>> e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics from 
>>> documentation
>>> 4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq
>>> c128368a45 Trac #27013: py3: some care for Hadamard matrices
>>> 6521233113 Trac #27010: py3: avoid .vertices() in methods _ford_fulkerson, 
>>> edge_cut, bounded_outdegree_orientation and gomory_hu_tree
>>> 58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in method 
>>> treewidth
>>> 1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices
>>> 010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx
>>> c14dc9c46f Trac #27005: wrong libgap conversion for matrices over QQ['x']
>>> 7123d7504d Trac #27003: _iterator_weight should not sort
>>> 48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3
>>> 57c5c40661 Trac #26999: 1 optional gurobi doctest failing
>>> ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in combinat/posets
>>> 23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py
>>> 0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23
>>> 619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check for 
>>> validity of kernel polynomials
>>> 4f560b02dc Trac #26988: py3: one tiny fix for isidentifier
>>> 90c3b31954 Trac #26985: some work on cluster mutation
>>> ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning
>>> 24186b661f Trac #26967: py3: some work on modular/modform_hecketriangle/
>>> 2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular crashes 
>>> sage
>>> 319b7ac911 Trac #26943: Giac support for term orders and elimination
>>> 537b91840d Trac #26938: IncidenceStructure breaks if points cannot be sorted
>>> 37065d12db Trac #26936: WordMorphism: domain/codomain should be sortable if 
>>> not given
>>> cdab354eeb Trac #26933: Subsets_s should support unsortable sets
>>> 6a818ec5e1 Trac #26917: py3: some fix in set_partition
>>> be09cc219f Trac #26864: Indentation error in Number Field
>>> a915a3ab1a Trac #26839: RealLazyField: converting constants in an 
>>> expression to float
>>> cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx
>>> c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all 
>>> permutations
>>> 52633235e2 Trac #26809: Wrong contains in Permutations avoiding a pattern
>>> 33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe
>>> faab330692 Trac #26361: Glucose SAT solver
>>> ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses
>>> 580c25bd1c Trac #26156: 0.0 is printed with too many digits
>>> ddfe6f3a20 Trac #25931: changes to partition for k combinat
>>> 08166d10a2 Trac #25900: Package libffi
>>> 35931ca890 Trac #25865: fast iterator for set partitions with given block 
>>> sizes
>>> 7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an 
>>> optional package again)
>>> 41153919eb Trac #25384: Let `sage --jupyter` call the Jupyter in Sage
>>> ec0b3f610b Trac #25147: Add DESTDIR support for boost_cropped
>>> a3ee80c6cb Trac #25143: Add DESTDIR support for pari
>>> 137ad44b65 

[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread fchapoton2
This libffi warning/failure does not prevent sage to run and work. It 
prevents my patchbot to work correctly though.

Le jeudi 24 janvier 2019 09:40:52 UTC+1, fchap...@gmail.com a écrit :
>
> I have the same issue with libffi !
>
> Le jeudi 24 janvier 2019 06:08:53 UTC+1, Steven Trogdon a écrit :
>>
>> Problem building libffi-3.2.1 on gentoo
>>
>> cp: cannot overwrite non-directory 
>> '/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory 
>> '/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'
>> 
>> Error copying files for libffi-3.2.1.
>> 
>>
>> /64bitdev/storage/sage-git_develop/sage/local/./lib64
>>
>> is a symlink
>>
>> ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64
>> lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 
>> /64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib
>>
>> On Wednesday, January 23, 2019 at 2:47:49 PM UTC-6, Volker Braun wrote:
>>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> 5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 
>>> 8.7.beta0
>>> 36ec29e57d Trac #26969: Misc pip upgrades
>>> 79cf5c980d Trac #27023: fix missing ::
>>> a4dd7deefc Trac #27020: OpenBLAS 0.3.5
>>> e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics from 
>>> documentation
>>> 4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq
>>> c128368a45 Trac #27013: py3: some care for Hadamard matrices
>>> 6521233113 Trac #27010: py3: avoid .vertices() in methods 
>>> _ford_fulkerson, edge_cut, bounded_outdegree_orientation and gomory_hu_tree
>>> 58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in method 
>>> treewidth
>>> 1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices
>>> 010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx
>>> c14dc9c46f Trac #27005: wrong libgap conversion for matrices over QQ['x']
>>> 7123d7504d Trac #27003: _iterator_weight should not sort
>>> 48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3
>>> 57c5c40661 Trac #26999: 1 optional gurobi doctest failing
>>> ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in 
>>> combinat/posets
>>> 23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py
>>> 0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23
>>> 619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check for 
>>> validity of kernel polynomials
>>> 4f560b02dc Trac #26988: py3: one tiny fix for isidentifier
>>> 90c3b31954 Trac #26985: some work on cluster mutation
>>> ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning
>>> 24186b661f Trac #26967: py3: some work on modular/modform_hecketriangle/
>>> 2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular 
>>> crashes sage
>>> 319b7ac911 Trac #26943: Giac support for term orders and elimination
>>> 537b91840d Trac #26938: IncidenceStructure breaks if points cannot be 
>>> sorted
>>> 37065d12db Trac #26936: WordMorphism: domain/codomain should be sortable 
>>> if not given
>>> cdab354eeb Trac #26933: Subsets_s should support unsortable sets
>>> 6a818ec5e1 Trac #26917: py3: some fix in set_partition
>>> be09cc219f Trac #26864: Indentation error in Number Field
>>> a915a3ab1a Trac #26839: RealLazyField: converting constants in an 
>>> expression to float
>>> cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx
>>> c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all 
>>> permutations
>>> 52633235e2 Trac #26809: Wrong contains in Permutations avoiding a pattern
>>> 33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe
>>> faab330692 Trac #26361: Glucose SAT solver
>>> ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses
>>> 580c25bd1c Trac #26156: 0.0 is printed with too many digits
>>> ddfe6f3a20 Trac #25931: changes to partition for k combinat
>>> 08166d10a2 Trac #25900: Package libffi
>>> 35931ca890 Trac #25865: fast iterator for set partitions with given 
>>> block sizes
>>> 7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an 
>>> optional package again)
>>> 41153919eb Trac #25384: Let `sage --jupyter` call the Jupyter in Sage
>>> ec0b3f610b Trac #25147: Add DESTDIR support for boost_cropped
>>> a3ee80c6cb Trac #25143: Add DESTDIR support for pari
>>> 137ad44b65 Trac #25100: Add DESTDIR support for gfan, lcalc, ratpoints, 
>>> rubiks, symmetrica
>>> d8f5ab4875 Trac #18214: Bug in volume computation of polyhedron
>>> 9b3ae6af92 Trac #27024: update sagetex to version 3.2
>>> 4a7f20f562 Trac #26966: py3: new doctest failures in homology
>>> 3d09a80bb4 Trac #26962: Logarithm of rational numbers is broken
>>> d6f2242df4 Trac #26907: 

[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread Sébastien Labbé


On Thursday, January 24, 2019 at 10:03:07 AM UTC+1, Sébastien Labbé wrote:
>
> I did not run any make test yet, but if I try to create a new notebook in 
> Jupyter I get an error page saying "500 : Internal Server Error" and the 
> error being printed in the terminal says
>
> ImportError: No module named defusedxml
>

Doing 

sage -pip install defusedxml

was sufficient to solve the issue.

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[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread Sébastien Labbé
I did not run any make test yet, but if I try to create a new notebook in 
Jupyter I get an error page saying "500 : Internal Server Error" and the 
error being printed in the terminal says

ImportError: No module named defusedxml

It is copied below:




[I 09:59:24.941 NotebookApp] Creating new notebook in 
[E 09:59:25.128 NotebookApp] Uncaught exception GET 
/notebooks/Untitled.ipynb?kernel_name=sagemath (::1)
HTTPServerRequest(protocol='http', host='localhost:', method='GET', 
uri='/notebooks/Untitled.ipynb?kernel_name=sagemath', version='HTTP/1.1', 
remote_ip='::1', headers={'Accept-Language': 
'fr,fr-FR;q=0.8,en-US;q=0.5,en;q=0.3', 'Accept-Encoding': 'gzip, deflate', 
'Host': 'localhost:', 'Accept': 
'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8', 
'User-Agent': 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:64.0) 
Gecko/20100101 Firefox/64.0', 'Connection': 'keep-alive', 'Referer': 
'http://localhost:/tree', 'Cookie': 
'_xsrf=2|35264b7d|a0d922c8bff6cf037e2dcd2d14fe13e5|1548320335; 
username-localhost-="2|1:0|10:1548320335|23:username-localhost-|44:OTczOWYwNjcxN2ExNGNmYzkyMTcwMWZkMDFmMTQzOWY=|657f357dec5c09edba2d5d892cebb767c82a885731c711dc90c53cf71c685521"',
 
'Upgrade-Insecure-Requests': '1'})
Traceback (most recent call last):
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/tornado/web.py", 
line 1509, in _execute
result = method(*self.path_args, **self.path_kwargs)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/tornado/web.py", 
line 2897, in wrapper
return method(self, *args, **kwargs)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/notebook/handlers.py",
 
line 59, in get
get_custom_frontend_exporters=get_custom_frontend_exporters
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/base/handlers.py",
 
line 462, in render_template
return template.render(**ns)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/jinja2/environment.py",
 
line 1008, in render
return self.environment.handle_exception(exc_info, True)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/jinja2/environment.py",
 
line 780, in handle_exception
reraise(exc_type, exc_value, tb)
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/notebook.html",
 
line 1, in top-level template code
{% extends "page.html" %}
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/page.html",
 
line 154, in top-level template code
{% block header %}
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/notebook.html",
 
line 120, in block "header"
{% for exporter in get_custom_frontend_exporters() %}
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/notebook/handlers.py",
 
line 19, in get_custom_frontend_exporters
from nbconvert.exporters.base import get_export_names, get_exporter
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/__init__.py",
 
line 4, in 
from .exporters import *
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/__init__.py",
 
line 3, in 
from .exporter_locator import export_by_name
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/exporter_locator.py",
 
line 12, in 
from .templateexporter import TemplateExporter
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/templateexporter.py",
 
line 23, in 
from nbconvert import filters
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/filters/__init__.py",
 
line 7, in 
from .strings import *
  File 
"/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/filters/strings.py",
 
line 22, in 
from defusedxml import cElementTree as ElementTree
ImportError: No module named defusedxml
[E 09:59:25.144 NotebookApp] {
  "Accept-Language": "fr,fr-FR;q=0.8,en-US;q=0.5,en;q=0.3", 
  "Accept-Encoding": "gzip, deflate", 
  "Host": "localhost:", 
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[sage-release] Re: Sage 8.7.beta0 released

2019-01-24 Thread fchapoton2
I have the same issue with libffi !

Le jeudi 24 janvier 2019 06:08:53 UTC+1, Steven Trogdon a écrit :
>
> Problem building libffi-3.2.1 on gentoo
>
> cp: cannot overwrite non-directory 
> '/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory 
> '/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'
> 
> Error copying files for libffi-3.2.1.
> 
>
> /64bitdev/storage/sage-git_develop/sage/local/./lib64
>
> is a symlink
>
> ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64
> lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 
> /64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib
>
> On Wednesday, January 23, 2019 at 2:47:49 PM UTC-6, Volker Braun wrote:
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> 5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 
>> 8.7.beta0
>> 36ec29e57d Trac #26969: Misc pip upgrades
>> 79cf5c980d Trac #27023: fix missing ::
>> a4dd7deefc Trac #27020: OpenBLAS 0.3.5
>> e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics from 
>> documentation
>> 4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq
>> c128368a45 Trac #27013: py3: some care for Hadamard matrices
>> 6521233113 Trac #27010: py3: avoid .vertices() in methods 
>> _ford_fulkerson, edge_cut, bounded_outdegree_orientation and gomory_hu_tree
>> 58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in method 
>> treewidth
>> 1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices
>> 010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx
>> c14dc9c46f Trac #27005: wrong libgap conversion for matrices over QQ['x']
>> 7123d7504d Trac #27003: _iterator_weight should not sort
>> 48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3
>> 57c5c40661 Trac #26999: 1 optional gurobi doctest failing
>> ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in combinat/posets
>> 23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py
>> 0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23
>> 619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check for 
>> validity of kernel polynomials
>> 4f560b02dc Trac #26988: py3: one tiny fix for isidentifier
>> 90c3b31954 Trac #26985: some work on cluster mutation
>> ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning
>> 24186b661f Trac #26967: py3: some work on modular/modform_hecketriangle/
>> 2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular 
>> crashes sage
>> 319b7ac911 Trac #26943: Giac support for term orders and elimination
>> 537b91840d Trac #26938: IncidenceStructure breaks if points cannot be 
>> sorted
>> 37065d12db Trac #26936: WordMorphism: domain/codomain should be sortable 
>> if not given
>> cdab354eeb Trac #26933: Subsets_s should support unsortable sets
>> 6a818ec5e1 Trac #26917: py3: some fix in set_partition
>> be09cc219f Trac #26864: Indentation error in Number Field
>> a915a3ab1a Trac #26839: RealLazyField: converting constants in an 
>> expression to float
>> cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx
>> c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all 
>> permutations
>> 52633235e2 Trac #26809: Wrong contains in Permutations avoiding a pattern
>> 33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe
>> faab330692 Trac #26361: Glucose SAT solver
>> ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses
>> 580c25bd1c Trac #26156: 0.0 is printed with too many digits
>> ddfe6f3a20 Trac #25931: changes to partition for k combinat
>> 08166d10a2 Trac #25900: Package libffi
>> 35931ca890 Trac #25865: fast iterator for set partitions with given block 
>> sizes
>> 7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an 
>> optional package again)
>> 41153919eb Trac #25384: Let `sage --jupyter` call the Jupyter in Sage
>> ec0b3f610b Trac #25147: Add DESTDIR support for boost_cropped
>> a3ee80c6cb Trac #25143: Add DESTDIR support for pari
>> 137ad44b65 Trac #25100: Add DESTDIR support for gfan, lcalc, ratpoints, 
>> rubiks, symmetrica
>> d8f5ab4875 Trac #18214: Bug in volume computation of polyhedron
>> 9b3ae6af92 Trac #27024: update sagetex to version 3.2
>> 4a7f20f562 Trac #26966: py3: new doctest failures in homology
>> 3d09a80bb4 Trac #26962: Logarithm of rational numbers is broken
>> d6f2242df4 Trac #26907: Exact division in ℤ[x][y] is broken
>> 6abcb72592 (tag: 8.6, trac/master, sagemath/master) Updated SageMath 
>> version to 8.6
>>
>>

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[sage-release] Re: Sage 8.7.beta0 released

2019-01-23 Thread Steven Trogdon
Problem building libffi-3.2.1 on gentoo

cp: cannot overwrite non-directory 
'/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory 
'/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'

Error copying files for libffi-3.2.1.


/64bitdev/storage/sage-git_develop/sage/local/./lib64

is a symlink

ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64
lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 
/64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib

On Wednesday, January 23, 2019 at 2:47:49 PM UTC-6, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 
> 8.7.beta0
> 36ec29e57d Trac #26969: Misc pip upgrades
> 79cf5c980d Trac #27023: fix missing ::
> a4dd7deefc Trac #27020: OpenBLAS 0.3.5
> e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics from 
> documentation
> 4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq
> c128368a45 Trac #27013: py3: some care for Hadamard matrices
> 6521233113 Trac #27010: py3: avoid .vertices() in methods _ford_fulkerson, 
> edge_cut, bounded_outdegree_orientation and gomory_hu_tree
> 58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in method 
> treewidth
> 1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices
> 010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx
> c14dc9c46f Trac #27005: wrong libgap conversion for matrices over QQ['x']
> 7123d7504d Trac #27003: _iterator_weight should not sort
> 48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3
> 57c5c40661 Trac #26999: 1 optional gurobi doctest failing
> ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in combinat/posets
> 23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py
> 0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23
> 619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check for 
> validity of kernel polynomials
> 4f560b02dc Trac #26988: py3: one tiny fix for isidentifier
> 90c3b31954 Trac #26985: some work on cluster mutation
> ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning
> 24186b661f Trac #26967: py3: some work on modular/modform_hecketriangle/
> 2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular 
> crashes sage
> 319b7ac911 Trac #26943: Giac support for term orders and elimination
> 537b91840d Trac #26938: IncidenceStructure breaks if points cannot be 
> sorted
> 37065d12db Trac #26936: WordMorphism: domain/codomain should be sortable 
> if not given
> cdab354eeb Trac #26933: Subsets_s should support unsortable sets
> 6a818ec5e1 Trac #26917: py3: some fix in set_partition
> be09cc219f Trac #26864: Indentation error in Number Field
> a915a3ab1a Trac #26839: RealLazyField: converting constants in an 
> expression to float
> cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx
> c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all 
> permutations
> 52633235e2 Trac #26809: Wrong contains in Permutations avoiding a pattern
> 33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe
> faab330692 Trac #26361: Glucose SAT solver
> ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses
> 580c25bd1c Trac #26156: 0.0 is printed with too many digits
> ddfe6f3a20 Trac #25931: changes to partition for k combinat
> 08166d10a2 Trac #25900: Package libffi
> 35931ca890 Trac #25865: fast iterator for set partitions with given block 
> sizes
> 7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an 
> optional package again)
> 41153919eb Trac #25384: Let `sage --jupyter` call the Jupyter in Sage
> ec0b3f610b Trac #25147: Add DESTDIR support for boost_cropped
> a3ee80c6cb Trac #25143: Add DESTDIR support for pari
> 137ad44b65 Trac #25100: Add DESTDIR support for gfan, lcalc, ratpoints, 
> rubiks, symmetrica
> d8f5ab4875 Trac #18214: Bug in volume computation of polyhedron
> 9b3ae6af92 Trac #27024: update sagetex to version 3.2
> 4a7f20f562 Trac #26966: py3: new doctest failures in homology
> 3d09a80bb4 Trac #26962: Logarithm of rational numbers is broken
> d6f2242df4 Trac #26907: Exact division in ℤ[x][y] is broken
> 6abcb72592 (tag: 8.6, trac/master, sagemath/master) Updated SageMath 
> version to 8.6
>
>

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