[sage-release] Re: Sage 9.1.rc5 released

2020-05-14 Thread Emmanuel Charpentier 
On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
beaing resent (I have libgsl25).

Is there a way to avoid rebuilding from scratch (make distclean...) ?

Le jeudi 14 mai 2020 00:41:44 UTC+2, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
>
> 765c5cb3e2 (trac/develop, tag: 9.1.rc5) Updated SageMath version to 9.1.rc5
> d15ac822ae Trac #29674: fedora-32:  If gcc 10 is found, install gcc spkg; 
> fix building gcc (9.2.0) spkg with gcc 10
> c5c78afdfd (tag: 9.1.rc4) Updated SageMath version to 9.1.rc4
>

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[sage-release] Re: Sage 9.1.rc5 released

2020-05-14 Thread Matthias Köppe 
On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:
>
> On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
> beaing resent (I have libgsl25).
>
> Is there a way to avoid rebuilding from scratch (make distclean...) ?
>
>
It should suffice to uninstall the sage packages that depend on gsl

$ grep gsl build/pkgs/*/dependencies

build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk suitesparse 
| $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib

build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | 
pkgconf
build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl 
gsl pari 

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[sage-release] Re: Sage 9.1.rc5 released

2020-05-14 Thread Emmanuel Charpentier 
Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't 
suggest anything...


Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :
>
> On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:
>>
>> On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
>> beaing resent (I have libgsl25).
>>
>> Is there a way to avoid rebuilding from scratch (make distclean...) ?
>>
>>
> It should suffice to uninstall the sage packages that depend on gsl
>
> $ grep gsl build/pkgs/*/dependencies
>
> build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib
>
> build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | 
> pkgconf
> build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl 
> gsl pari 
>

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[sage-release] Re: Sage 9.1.rc5 released

2020-05-16 Thread Matthias Köppe 
On Wednesday, May 13, 2020 at 3:41:44 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 765c5cb3e2 (trac/develop, tag: 9.1.rc5) Updated SageMath version to 9.1.rc5
> d15ac822ae Trac #29674: fedora-32:  If gcc 10 is found, install gcc spkg; 
> fix building gcc (9.2.0) spkg with gcc 10
>

The automatic tests at https://github.com/sagemath/sage/actions have 
completed. Some builds time out (> 6h), due to random variation of the 
build times. Minor doctest failures in various builds, similar to what has 
been noted for previous betas and rcs.

*Linux* (https://github.com/sagemath/sage/actions/runs/104055531):
*– ubuntu*-{trusty,xenial,bionic,eoan,focal} OK
*– debian*-{jessie,stretch,buster,bullseye,sid} OK (build failures for 
debian-sid-standard are from temporary Debian package installation problems)
*–* *linuxmint*-{17,18,19,19.3} OK
*–* *fedora*-{26,27,28,29,30,31,32} OK. In particular, *fedora-32* now 
builds gcc and succeeds (some builds time out)
*– centos*-{7,8} OK
*–* *archlinux*-latest OK
*–* *slackware*-14.2 OK

*Linux 32bit* (with timeouts)
*–* *ubuntu*-eoan-i386 OK
*–* *debian*-buster-i386 OK

*macOS* (also at https://github.com/sagemath/sage/actions/runs/104055531):
*–* *homebrew*-macos OK (until runner was killed)
*–* homebrew-macos-*python3_xcode* OK
*–* homebrew-macos-*python3_pythonorg* OK

*Linux/macOS + conda-forge* (known limitation: only "standard" builds work; 
"minimal" and "standard-python2" builds do not work)
*–* *docker*-conda-forge OK 
*–* local*-ubuntu-*conda-forge OK
*–* local*-macos-*conda-forge OK

*Windows* (Cygwin64) (
https://github.com/sagemath/sage/actions/runs/104055539):
*–* *cygwin-standard* build completed without errors (stage-iii)

Looks like this is ready for releasing.


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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-14 Thread Dima Pasechnik 
make cvxopt-clean



On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
emanuel.charpent...@gmail.com> wrote:

> Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't
> suggest anything...
>
>
> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :
>>
>> On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:
>>>
>>> On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not
>>> beaing resent (I have libgsl25).
>>>
>>> Is there a way to avoid rebuilding from scratch (make distclean...) ?
>>>
>>>
>> It should suffice to uninstall the sage packages that depend on gsl
>>
>> $ grep gsl build/pkgs/*/dependencies
>>
>> build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk
>> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib
>>
>> build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) |
>> pkgconf
>> build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl
>> gsl pari
>>
> --
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> 
> .
>

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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Emmanuel Charpentier 
Thank you, Dima !

However, this isn't enough. Friom the relevant portion of install.log :

[dochtml] Traceback (most recent call last):
[dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
_run_module_as_main
[dochtml] mod_name, mod_spec, code = _get_module_details(mod_name, 
_Error)
[dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
_get_module_details
[dochtml] return _get_module_details(pkg_main_name, error)
[dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
_get_module_details
[dochtml] __import__(pkg_name)
[dochtml]   File 
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
 
line 59, in 
[dochtml] import sage.all
[dochtml]   File 
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
119, in 
[dochtml] from sage.misc.all   import * # takes a while
[dochtml]   File 
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
line 84, in 
[dochtml] from .functional import (additive_order,
[dochtml]   File 
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py", 
line 27, in 
[dochtml] from sage.rings.complex_double import CDF
[dochtml] ImportError: libgsl.so.23: cannot open shared object file: No 
such file or directory
make[3]: *** [Makefile:2013: doc-html] Error 1

Is there somethoing specific to clean ?


Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit :
>
> make cvxopt-clean 
>
>
>
> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier  > wrote:
>
>> Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't 
>> suggest anything...
>>
>>
>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :
>>>
>>> On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier 
>>> wrote:

 On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
 beaing resent (I have libgsl25).

 Is there a way to avoid rebuilding from scratch (make distclean...) ?


>>> It should suffice to uninstall the sage packages that depend on gsl
>>>
>>> $ grep gsl build/pkgs/*/dependencies
>>>
>>> build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
>>> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib
>>>
>>> build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | 
>>> pkgconf
>>> build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl 
>>> gsl pari 
>>>
>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "sage-release" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to sage-r...@googlegroups.com .
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>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com
>>  
>> 
>> .
>>
>

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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Dima Pasechnik 
I also needed to rebuild the other deps of gsl, ie giac and
fflas_ffpack - which you had to uninstall just as you did for cvxopt


On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier
 wrote:
>
> Thank you, Dima !
>
> However, this isn't enough. Friom the relevant portion of install.log :
>
> [dochtml] Traceback (most recent call last):
> [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
> _run_module_as_main
> [dochtml] mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
> [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
> _get_module_details
> [dochtml] return _get_module_details(pkg_main_name, error)
> [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
> _get_module_details
> [dochtml] __import__(pkg_name)
> [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  line 59, in 
> [dochtml] import sage.all
> [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 119, 
> in 
> [dochtml] from sage.misc.all   import * # takes a while
> [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", line 
> 84, in 
> [dochtml] from .functional import (additive_order,
> [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>  line 27, in 
> [dochtml] from sage.rings.complex_double import CDF
> [dochtml] ImportError: libgsl.so.23: cannot open shared object file: No such 
> file or directory
> make[3]: *** [Makefile:2013: doc-html] Error 1
>
> Is there somethoing specific to clean ?
>
>
> Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit :
>>
>> make cvxopt-clean
>>
>>
>>
>> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier  
>> wrote:
>>>
>>> Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't 
>>> suggest anything...
>>>
>>>
>>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :

 On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:
>
> On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
> beaing resent (I have libgsl25).
>
> Is there a way to avoid rebuilding from scratch (make distclean...) ?
>

 It should suffice to uninstall the sage packages that depend on gsl

 $ grep gsl build/pkgs/*/dependencies

 build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
 suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib

 build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | 
 pkgconf

 build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl 
 gsl pari
>>>
>>> --
>>> You received this message because you are subscribed to the Google Groups 
>>> "sage-release" group.
>>> To unsubscribe from this group and stop receiving emails from it, send an 
>>> email to sage-r...@googlegroups.com.
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>>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>
> --
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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Emmanuel Charpentier 
This I was aware of and rebuilt them (successfully, it seems : I rebuilt 
fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc...

Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit :
>
> I also needed to rebuild the other deps of gsl, ie giac and 
> fflas_ffpack - which you had to uninstall just as you did for cvxopt 
>
>
> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
> > wrote: 
> > 
> > Thank you, Dima ! 
> > 
> > However, this isn't enough. Friom the relevant portion of install.log : 
> > 
> > [dochtml] Traceback (most recent call last): 
> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
> _run_module_as_main 
> > [dochtml] mod_name, mod_spec, code = _get_module_details(mod_name, 
> _Error) 
> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
> _get_module_details 
> > [dochtml] return _get_module_details(pkg_main_name, error) 
> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
> _get_module_details 
> > [dochtml] __import__(pkg_name) 
> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
> line 59, in  
> > [dochtml] import sage.all 
> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
> 119, in  
> > [dochtml] from sage.misc.all   import * # takes a while 
> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
> line 84, in  
> > [dochtml] from .functional import (additive_order, 
> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>  
> line 27, in  
> > [dochtml] from sage.rings.complex_double import CDF 
> > [dochtml] ImportError: libgsl.so.23: cannot open shared object file: No 
> such file or directory 
> > make[3]: *** [Makefile:2013: doc-html] Error 1 
> > 
> > Is there somethoing specific to clean ? 
> > 
> > 
> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : 
> >> 
> >> make cvxopt-clean 
> >> 
> >> 
> >> 
> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
> emanuel.c...@gmail.com> wrote: 
> >>> 
> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
> doesn't suggest anything... 
> >>> 
> >>> 
> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : 
>  
>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier 
> wrote: 
> > 
> > On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 
> not beaing resent (I have libgsl25). 
> > 
> > Is there a way to avoid rebuilding from scratch (make distclean...) 
> ? 
> > 
>  
>  It should suffice to uninstall the sage packages that depend on gsl 
>  
>  $ grep gsl build/pkgs/*/dependencies 
>  
>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib 
>  
>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) 
> | pkgconf 
>  
>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi 
> ntl gsl pari 
> >>> 
> >>> -- 
> >>> You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> >>> To unsubscribe from this group and stop receiving emails from it, send 
> an email to sage-r...@googlegroups.com. 
> >>> To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>  
>
> > 
> > -- 
> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> > To unsubscribe from this group and stop receiving emails from it, send 
> an email to sage-r...@googlegroups.com . 
> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40googlegroups.com.
>  
>
>

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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Dima Pasechnik 
On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier
 wrote:
>
> This I was aware of and rebuilt them (successfully, it seems : I rebuilt 
> fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc...
>
> Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit :
>>
>> I also needed to rebuild the other deps of gsl, ie giac and
>> fflas_ffpack - which you had to uninstall just as you did for cvxopt
>>
>>
>> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier
>>  wrote:
>> >
>> > Thank you, Dima !
>> >
>> > However, this isn't enough. Friom the relevant portion of install.log :
>> >
>> > [dochtml] Traceback (most recent call last):
>> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
>> > _run_module_as_main
>> > [dochtml] mod_name, mod_spec, code = _get_module_details(mod_name, 
>> > _Error)
>> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
>> > _get_module_details
>> > [dochtml] return _get_module_details(pkg_main_name, error)
>> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
>> > _get_module_details
>> > [dochtml] __import__(pkg_name)
>> > [dochtml]   File 
>> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>> >  line 59, in 
>> > [dochtml] import sage.all
>> > [dochtml]   File 
>> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
>> > 119, in 
>> > [dochtml] from sage.misc.all   import * # takes a while
>> > [dochtml]   File 
>> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
>> > line 84, in 
>> > [dochtml] from .functional import (additive_order,
>> > [dochtml]   File 
>> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>> >  line 27, in 
>> > [dochtml] from sage.rings.complex_double import CDF
>> > [dochtml] ImportError: libgsl.so.23: cannot open shared object file: No 
>> > such file or directory

I don't know - this seems to be the right library version.
What do get from

ls -l $SAGE_LOCAL/lib/*gsl*

?

>> > make[3]: *** [Makefile:2013: doc-html] Error 1
>> >
>> > Is there somethoing specific to clean ?
>> >
>> >
>> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit :
>> >>
>> >> make cvxopt-clean
>> >>
>> >>
>> >>
>> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier 
>> >>  wrote:
>> >>>
>> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't 
>> >>> suggest anything...
>> >>>
>> >>>
>> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :
>> 
>>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier 
>>  wrote:
>> >
>> > On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not 
>> > beaing resent (I have libgsl25).
>> >
>> > Is there a way to avoid rebuilding from scratch (make distclean...) ?
>> >
>> 
>>  It should suffice to uninstall the sage packages that depend on gsl
>> 
>>  $ grep gsl build/pkgs/*/dependencies
>> 
>>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
>>  suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib
>> 
>>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | 
>>  pkgconf
>> 
>>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi 
>>  ntl gsl pari
>> >>>
>> >>> --
>> >>> You received this message because you are subscribed to the Google 
>> >>> Groups "sage-release" group.
>> >>> To unsubscribe from this group and stop receiving emails from it, send 
>> >>> an email to sage-r...@googlegroups.com.
>> >>> To view this discussion on the web visit 
>> >>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>> >
>> > --
>> > You received this message because you are subscribed to the Google Groups 
>> > "sage-release" group.
>> > To unsubscribe from this group and stop receiving emails from it, send an 
>> > email to sage-r...@googlegroups.com.
>> > To view this discussion on the web visit 
>> > https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40googlegroups.com.
>
> --
> You received this message because you are subscribed to the Google Groups 
> "sage-release" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to sage-release+unsubscr...@googlegroups.com.
> To view this discussion on the web visit 
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Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Emmanuel Charpentier 
Nothing :

charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type


Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit :
>
> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
> > wrote: 
> > 
> > This I was aware of and rebuilt them (successfully, it seems : I rebuilt 
> fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
> > 
> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
> >> 
> >> I also needed to rebuild the other deps of gsl, ie giac and 
> >> fflas_ffpack - which you had to uninstall just as you did for cvxopt 
> >> 
> >> 
> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
> >>  wrote: 
> >> > 
> >> > Thank you, Dima ! 
> >> > 
> >> > However, this isn't enough. Friom the relevant portion of install.log 
> : 
> >> > 
> >> > [dochtml] Traceback (most recent call last): 
> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
> _run_module_as_main 
> >> > [dochtml] mod_name, mod_spec, code = 
> _get_module_details(mod_name, _Error) 
> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
> _get_module_details 
> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
> _get_module_details 
> >> > [dochtml] __import__(pkg_name) 
> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
> line 59, in  
> >> > [dochtml] import sage.all 
> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
> 119, in  
> >> > [dochtml] from sage.misc.all   import * # takes a 
> while 
> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
> line 84, in  
> >> > [dochtml] from .functional import (additive_order, 
> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>  
> line 27, in  
> >> > [dochtml] from sage.rings.complex_double import CDF 
> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object file: 
> No such file or directory 
>
> I don't know - this seems to be the right library version. 
> What do get from 
>
> ls -l $SAGE_LOCAL/lib/*gsl* 
>
> ? 
>
> >> > make[3]: *** [Makefile:2013: doc-html] Error 1 
> >> > 
> >> > Is there somethoing specific to clean ? 
> >> > 
> >> > 
> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : 
> >> >> 
> >> >> make cvxopt-clean 
> >> >> 
> >> >> 
> >> >> 
> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
> emanuel.c...@gmail.com> wrote: 
> >> >>> 
> >> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
> doesn't suggest anything... 
> >> >>> 
> >> >>> 
> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : 
> >>  
> >>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel 
> Charpentier wrote: 
> >> > 
> >> > On Debian testing, upgrading from  9.1.rc3 fails early on 
> longsl23 not beaing resent (I have libgsl25). 
> >> > 
> >> > Is there a way to avoid rebuilding from scratch (make 
> distclean...) ? 
> >> > 
> >>  
> >>  It should suffice to uninstall the sage packages that depend on 
> gsl 
> >>  
> >>  $ grep gsl build/pkgs/*/dependencies 
> >>  
> >>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib 
> >>  
> >>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl 
> $(BLAS) | pkgconf 
> >>  
> >>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr 
> mpfi ntl gsl pari 
> >> >>> 
> >> >>> -- 
> >> >>> You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> >> >>> To unsubscribe from this group and stop receiving emails from it, 
> send an email to sage-r...@googlegroups.com. 
> >> >>> To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>  
>
> >> > 
> >> > -- 
> >> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> >> > To unsubscribe from this group and stop receiving emails from it, 
> send an email to sage-r...@googlegroups.com. 
> >> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40googlegroups.com.
>  
>
> > 
> > -- 
> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> > To unsubscribe from this group and stop receiving emails from it, send 
> an email to sage-r...@googlegroups.com . 
> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/4220f0bd-c77f-4077-98ff-461c61fd

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Emmanuel Charpentier 
And, BTW, 

charpent@zen-book-flip:/usr/local/sage-9$ SAGE_LOCAL=local ls -l 
$SAGE_LOCAL/lib/*gsl*
ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type


Le vendredi 15 mai 2020 11:34:30 UTC+2, Emmanuel Charpentier a écrit :
>
> Nothing :
>
> charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
> ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce 
> type
>
>
> Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit :
>>
>> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
>>  wrote: 
>> > 
>> > This I was aware of and rebuilt them (successfully, it seems : I 
>> rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
>> > 
>> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
>> >> 
>> >> I also needed to rebuild the other deps of gsl, ie giac and 
>> >> fflas_ffpack - which you had to uninstall just as you did for cvxopt 
>> >> 
>> >> 
>> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
>> >>  wrote: 
>> >> > 
>> >> > Thank you, Dima ! 
>> >> > 
>> >> > However, this isn't enough. Friom the relevant portion of 
>> install.log : 
>> >> > 
>> >> > [dochtml] Traceback (most recent call last): 
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
>> _run_module_as_main 
>> >> > [dochtml] mod_name, mod_spec, code = 
>> _get_module_details(mod_name, _Error) 
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
>> _get_module_details 
>> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
>> _get_module_details 
>> >> > [dochtml] __import__(pkg_name) 
>> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>  
>> line 59, in  
>> >> > [dochtml] import sage.all 
>> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
>> 119, in  
>> >> > [dochtml] from sage.misc.all   import * # takes a 
>> while 
>> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
>> line 84, in  
>> >> > [dochtml] from .functional import (additive_order, 
>> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>>  
>> line 27, in  
>> >> > [dochtml] from sage.rings.complex_double import CDF 
>> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object file: 
>> No such file or directory 
>>
>> I don't know - this seems to be the right library version. 
>> What do get from 
>>
>> ls -l $SAGE_LOCAL/lib/*gsl* 
>>
>> ? 
>>
>> >> > make[3]: *** [Makefile:2013: doc-html] Error 1 
>> >> > 
>> >> > Is there somethoing specific to clean ? 
>> >> > 
>> >> > 
>> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : 
>> >> >> 
>> >> >> make cvxopt-clean 
>> >> >> 
>> >> >> 
>> >> >> 
>> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
>> emanuel.c...@gmail.com> wrote: 
>> >> >>> 
>> >> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
>> doesn't suggest anything... 
>> >> >>> 
>> >> >>> 
>> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : 
>> >>  
>> >>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel 
>> Charpentier wrote: 
>> >> > 
>> >> > On Debian testing, upgrading from  9.1.rc3 fails early on 
>> longsl23 not beaing resent (I have libgsl25). 
>> >> > 
>> >> > Is there a way to avoid rebuilding from scratch (make 
>> distclean...) ? 
>> >> > 
>> >>  
>> >>  It should suffice to uninstall the sage packages that depend on 
>> gsl 
>> >>  
>> >>  $ grep gsl build/pkgs/*/dependencies 
>> >>  
>> >>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
>> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib 
>> >>  
>> >>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl 
>> $(BLAS) | pkgconf 
>> >>  
>> >>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr 
>> mpfi ntl gsl pari 
>> >> >>> 
>> >> >>> -- 
>> >> >>> You received this message because you are subscribed to the Google 
>> Groups "sage-release" group. 
>> >> >>> To unsubscribe from this group and stop receiving emails from it, 
>> send an email to sage-r...@googlegroups.com. 
>> >> >>> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>>  
>>
>> >> > 
>> >> > -- 
>> >> > You received this message because you are subscribed to the Google 
>> Groups "sage-release" group. 
>> >> > To unsubscribe from this group and stop receiving emails from it, 
>> send an email to sage-r...@googlegroups.com. 
>> >> > To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40g

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Dima Pasechnik 
On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier
 wrote:
>
> Nothing :
>
> charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
> ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type
>
it had to be run under sage -sh, to set $SAGE_LOCAL
meaningfully.

>
> Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit :
>>
>> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier
>>  wrote:
>> >
>> > This I was aware of and rebuilt them (successfully, it seems : I rebuilt 
>> > fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc...
>> >
>> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit :
>> >>
>> >> I also needed to rebuild the other deps of gsl, ie giac and
>> >> fflas_ffpack - which you had to uninstall just as you did for cvxopt
>> >>
>> >>
>> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier
>> >>  wrote:
>> >> >
>> >> > Thank you, Dima !
>> >> >
>> >> > However, this isn't enough. Friom the relevant portion of install.log :
>> >> >
>> >> > [dochtml] Traceback (most recent call last):
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
>> >> > _run_module_as_main
>> >> > [dochtml] mod_name, mod_spec, code = _get_module_details(mod_name, 
>> >> > _Error)
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
>> >> > _get_module_details
>> >> > [dochtml] return _get_module_details(pkg_main_name, error)
>> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
>> >> > _get_module_details
>> >> > [dochtml] __import__(pkg_name)
>> >> > [dochtml]   File 
>> >> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>> >> >  line 59, in 
>> >> > [dochtml] import sage.all
>> >> > [dochtml]   File 
>> >> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
>> >> > 119, in 
>> >> > [dochtml] from sage.misc.all   import * # takes a while
>> >> > [dochtml]   File 
>> >> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
>> >> > line 84, in 
>> >> > [dochtml] from .functional import (additive_order,
>> >> > [dochtml]   File 
>> >> > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>> >> >  line 27, in 
>> >> > [dochtml] from sage.rings.complex_double import CDF
>> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object file: No 
>> >> > such file or directory
>>
>> I don't know - this seems to be the right library version.
>> What do get from
>>
>> ls -l $SAGE_LOCAL/lib/*gsl*
>>
>> ?
>>
>> >> > make[3]: *** [Makefile:2013: doc-html] Error 1
>> >> >
>> >> > Is there somethoing specific to clean ?
>> >> >
>> >> >
>> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit :
>> >> >>
>> >> >> make cvxopt-clean
>> >> >>
>> >> >>
>> >> >>
>> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier 
>> >> >>  wrote:
>> >> >>>
>> >> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
>> >> >>> doesn't suggest anything...
>> >> >>>
>> >> >>>
>> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :
>> >> 
>> >>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier 
>> >>  wrote:
>> >> >
>> >> > On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 
>> >> > not beaing resent (I have libgsl25).
>> >> >
>> >> > Is there a way to avoid rebuilding from scratch (make distclean...) 
>> >> > ?
>> >> >
>> >> 
>> >>  It should suffice to uninstall the sage packages that depend on gsl
>> >> 
>> >>  $ grep gsl build/pkgs/*/dependencies
>> >> 
>> >>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
>> >>  suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib
>> >> 
>> >>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl 
>> >>  $(BLAS) | pkgconf
>> >> 
>> >>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi 
>> >>  ntl gsl pari
>> >> >>>
>> >> >>> --
>> >> >>> You received this message because you are subscribed to the Google 
>> >> >>> Groups "sage-release" group.
>> >> >>> To unsubscribe from this group and stop receiving emails from it, 
>> >> >>> send an email to sage-r...@googlegroups.com.
>> >> >>> To view this discussion on the web visit 
>> >> >>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com.
>> >> >
>> >> > --
>> >> > You received this message because you are subscribed to the Google 
>> >> > Groups "sage-release" group.
>> >> > To unsubscribe from this group and stop receiving emails from it, send 
>> >> > an email to sage-r...@googlegroups.com.
>> >> > To view this discussion on the web visit 
>> >> > https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40googlegroups.com.
>> >
>> > --
>> > You received this message because you are subscribed to

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-15 Thread Emmanuel Charpentier 
Same difference :

charpent@zen-book-flip:/usr/local/sage-9$ sage -sh

Starting subshell with Sage environment variables set.  Don't forget
to exit when you are done.  Beware:
 * Do not do anything with other copies of Sage on your system.
 * Do not use this for installing Sage packages using "sage -i" or for
   running "make" at Sage's root directory.  These should be done
   outside the Sage shell.

Bypassing shell configuration files...

Note: SAGE_ROOT=/usr/local/sage-9
(sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun 
fichier ou dossier de ce type
(sage-sh) charpent@zen-book-flip:sage-9$ exit
exit
Exited Sage subshell.


Le vendredi 15 mai 2020 12:29:46 UTC+2, Dima Pasechnik a écrit :
>
> On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier 
> > wrote: 
> > 
> > Nothing : 
> > 
> > charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* 
> > ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce 
> type 
> > 
> it had to be run under sage -sh, to set $SAGE_LOCAL 
> meaningfully. 
>
> > 
> > Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit : 
> >> 
> >> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
> >>  wrote: 
> >> > 
> >> > This I was aware of and rebuilt them (successfully, it seems : I 
> rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
> >> > 
> >> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
> >> >> 
> >> >> I also needed to rebuild the other deps of gsl, ie giac and 
> >> >> fflas_ffpack - which you had to uninstall just as you did for cvxopt 
> >> >> 
> >> >> 
> >> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
> >> >>  wrote: 
> >> >> > 
> >> >> > Thank you, Dima ! 
> >> >> > 
> >> >> > However, this isn't enough. Friom the relevant portion of 
> install.log : 
> >> >> > 
> >> >> > [dochtml] Traceback (most recent call last): 
> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
> _run_module_as_main 
> >> >> > [dochtml] mod_name, mod_spec, code = 
> _get_module_details(mod_name, _Error) 
> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
> _get_module_details 
> >> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
> _get_module_details 
> >> >> > [dochtml] __import__(pkg_name) 
> >> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
> line 59, in  
> >> >> > [dochtml] import sage.all 
> >> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
> 119, in  
> >> >> > [dochtml] from sage.misc.all   import * # takes a 
> while 
> >> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
> line 84, in  
> >> >> > [dochtml] from .functional import (additive_order, 
> >> >> > [dochtml]   File 
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>  
> line 27, in  
> >> >> > [dochtml] from sage.rings.complex_double import CDF 
> >> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object 
> file: No such file or directory 
> >> 
> >> I don't know - this seems to be the right library version. 
> >> What do get from 
> >> 
> >> ls -l $SAGE_LOCAL/lib/*gsl* 
> >> 
> >> ? 
> >> 
> >> >> > make[3]: *** [Makefile:2013: doc-html] Error 1 
> >> >> > 
> >> >> > Is there somethoing specific to clean ? 
> >> >> > 
> >> >> > 
> >> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : 
> >> >> >> 
> >> >> >> make cvxopt-clean 
> >> >> >> 
> >> >> >> 
> >> >> >> 
> >> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
> emanuel.c...@gmail.com> wrote: 
> >> >> >>> 
> >> >> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
> doesn't suggest anything... 
> >> >> >>> 
> >> >> >>> 
> >> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : 
> >> >>  
> >> >>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel 
> Charpentier wrote: 
> >> >> > 
> >> >> > On Debian testing, upgrading from  9.1.rc3 fails early on 
> longsl23 not beaing resent (I have libgsl25). 
> >> >> > 
> >> >> > Is there a way to avoid rebuilding from scratch (make 
> distclean...) ? 
> >> >> > 
> >> >>  
> >> >>  It should suffice to uninstall the sage packages that depend on 
> gsl 
> >> >>  
> >> >>  $ grep gsl build/pkgs/*/dependencies 
> >> >>  
> >> >>  build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk 
> suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib 
> >> >>  
> >> >>  build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl 
> $(BLAS) | pkgconf 
> >> >>  
> >> >>  build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr 
> mp

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-16 Thread Emmanuel Charpentier 
Well, I'm still stuck.

A data point : inna dplicate of this tree, make distclean, make config, 
./configure, make succeeds in buildig Sage 9.1.rc5. ptestlong underway.

HTH,

Le vendredi 15 mai 2020 13:21:35 UTC+2, Emmanuel Charpentier a écrit :
>
> Same difference :
>
> charpent@zen-book-flip:/usr/local/sage-9$ sage -sh
>
> Starting subshell with Sage environment variables set.  Don't forget
> to exit when you are done.  Beware:
>  * Do not do anything with other copies of Sage on your system.
>  * Do not use this for installing Sage packages using "sage -i" or for
>running "make" at Sage's root directory.  These should be done
>outside the Sage shell.
>
> Bypassing shell configuration files...
>
> Note: SAGE_ROOT=/usr/local/sage-9
> (sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
> ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun 
> fichier ou dossier de ce type
> (sage-sh) charpent@zen-book-flip:sage-9$ exit
> exit
> Exited Sage subshell.
>
>
> Le vendredi 15 mai 2020 12:29:46 UTC+2, Dima Pasechnik a écrit :
>>
>> On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier 
>>  wrote: 
>> > 
>> > Nothing : 
>> > 
>> > charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* 
>> > ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce 
>> type 
>> > 
>> it had to be run under sage -sh, to set $SAGE_LOCAL 
>> meaningfully. 
>>
>> > 
>> > Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit : 
>> >> 
>> >> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
>> >>  wrote: 
>> >> > 
>> >> > This I was aware of and rebuilt them (successfully, it seems : I 
>> rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
>> >> > 
>> >> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
>> >> >> 
>> >> >> I also needed to rebuild the other deps of gsl, ie giac and 
>> >> >> fflas_ffpack - which you had to uninstall just as you did for 
>> cvxopt 
>> >> >> 
>> >> >> 
>> >> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
>> >> >>  wrote: 
>> >> >> > 
>> >> >> > Thank you, Dima ! 
>> >> >> > 
>> >> >> > However, this isn't enough. Friom the relevant portion of 
>> install.log : 
>> >> >> > 
>> >> >> > [dochtml] Traceback (most recent call last): 
>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
>> _run_module_as_main 
>> >> >> > [dochtml] mod_name, mod_spec, code = 
>> _get_module_details(mod_name, _Error) 
>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
>> _get_module_details 
>> >> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
>> _get_module_details 
>> >> >> > [dochtml] __import__(pkg_name) 
>> >> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>  
>> line 59, in  
>> >> >> > [dochtml] import sage.all 
>> >> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
>> 119, in  
>> >> >> > [dochtml] from sage.misc.all   import * # takes a 
>> while 
>> >> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
>> line 84, in  
>> >> >> > [dochtml] from .functional import (additive_order, 
>> >> >> > [dochtml]   File 
>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>>  
>> line 27, in  
>> >> >> > [dochtml] from sage.rings.complex_double import CDF 
>> >> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object 
>> file: No such file or directory 
>> >> 
>> >> I don't know - this seems to be the right library version. 
>> >> What do get from 
>> >> 
>> >> ls -l $SAGE_LOCAL/lib/*gsl* 
>> >> 
>> >> ? 
>> >> 
>> >> >> > make[3]: *** [Makefile:2013: doc-html] Error 1 
>> >> >> > 
>> >> >> > Is there somethoing specific to clean ? 
>> >> >> > 
>> >> >> > 
>> >> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : 
>> >> >> >> 
>> >> >> >> make cvxopt-clean 
>> >> >> >> 
>> >> >> >> 
>> >> >> >> 
>> >> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <
>> emanuel.c...@gmail.com> wrote: 
>> >> >> >>> 
>> >> >> >>> Okay. How do you uninstall them ? The ./sage -advanced commmand 
>> doesn't suggest anything... 
>> >> >> >>> 
>> >> >> >>> 
>> >> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : 
>> >> >>  
>> >> >>  On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel 
>> Charpentier wrote: 
>> >> >> > 
>> >> >> > On Debian testing, upgrading from  9.1.rc3 fails early on 
>> longsl23 not beaing resent (I have libgsl25). 
>> >> >> > 
>> >> >> > Is there a way to avoid rebuilding from scratch (make 
>> distclean...) ? 
>> >> >> > 
>> >> >>  
>> >> >>  It should suffice to uninstall the sage packages that depend 
>> on gsl 
>> >> >>  
>> >> >> >>>

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-16 Thread Emmanuel Charpentier 


On Debian testing running on core i7 + 16 GB RAM:

   - upgrading 9.1.rc3 to 9.1.rc5 via make ptestlong *fails* (see above) ; 
   - rebuilding afresh (make distclean ; make config ; ./configure ; make 
   ptestlong) succeeds with one transient error (timeout) and 10 permanent 
   errors : 

File Result P/T 
src/sage/tests/parigp.py Timed out T 
src/sage/schemes/elliptic_curves/ell_number_field.py 3 doctests failed P 
src/sage/rings/number_field/number_field.py 7 doctests failed P 
src/sage/rings/number_field/number_field_element.pyx 1 doctest failed P 
src/sage/rings/number_field/number_field_ideal.py 2 doctests failed P 
src/sage/numerical/backends/glpk_backend.pyx 1 doctest failed P 
src/sage/lfunctions/dokchitser.py 2 doctests failed P 
src/sage/rings/polynomial/polynomial_quotient_ring.py 2 doctests failed P 
src/sage/lfunctions/pari.py 1 doctest failed P 
src/sage/rings/number_field/unit_group.py 1 doctest failed P 
src/sage/libs/glpk/error.pyx 1 doctest failed P 

The timeout wasn’t observed already ; all other errors were. The result of 
the retesting of initially failing tests is attached as chkerrs.txt.

HTH,

Le samedi 16 mai 2020 12:22:44 UTC+2, Emmanuel Charpentier a écrit :

Well, I'm still stuck.
>
> A data point : inna dplicate of this tree, make distclean, make config, 
> ./configure, make succeeds in buildig Sage 9.1.rc5. ptestlong underway.
>
> HTH,
>
> Le vendredi 15 mai 2020 13:21:35 UTC+2, Emmanuel Charpentier a écrit :
>>
>> Same difference :
>>
>> charpent@zen-book-flip:/usr/local/sage-9$ sage -sh
>>
>> Starting subshell with Sage environment variables set.  Don't forget
>> to exit when you are done.  Beware:
>>  * Do not do anything with other copies of Sage on your system.
>>  * Do not use this for installing Sage packages using "sage -i" or for
>>running "make" at Sage's root directory.  These should be done
>>outside the Sage shell.
>>
>> Bypassing shell configuration files...
>>
>> Note: SAGE_ROOT=/usr/local/sage-9
>> (sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
>> ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun 
>> fichier ou dossier de ce type
>> (sage-sh) charpent@zen-book-flip:sage-9$ exit
>> exit
>> Exited Sage subshell.
>>
>>
>> Le vendredi 15 mai 2020 12:29:46 UTC+2, Dima Pasechnik a écrit :
>>>
>>> On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier 
>>>  wrote: 
>>> > 
>>> > Nothing : 
>>> > 
>>> > charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* 
>>> > ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de 
>>> ce type 
>>> > 
>>> it had to be run under sage -sh, to set $SAGE_LOCAL 
>>> meaningfully. 
>>>
>>> > 
>>> > Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit : 
>>> >> 
>>> >> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
>>> >>  wrote: 
>>> >> > 
>>> >> > This I was aware of and rebuilt them (successfully, it seems : I 
>>> rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
>>> >> > 
>>> >> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
>>> >> >> 
>>> >> >> I also needed to rebuild the other deps of gsl, ie giac and 
>>> >> >> fflas_ffpack - which you had to uninstall just as you did for 
>>> cvxopt 
>>> >> >> 
>>> >> >> 
>>> >> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
>>> >> >>  wrote: 
>>> >> >> > 
>>> >> >> > Thank you, Dima ! 
>>> >> >> > 
>>> >> >> > However, this isn't enough. Friom the relevant portion of 
>>> install.log : 
>>> >> >> > 
>>> >> >> > [dochtml] Traceback (most recent call last): 
>>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
>>> _run_module_as_main 
>>> >> >> > [dochtml] mod_name, mod_spec, code = 
>>> _get_module_details(mod_name, _Error) 
>>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
>>> _get_module_details 
>>> >> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
>>> >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
>>> _get_module_details 
>>> >> >> > [dochtml] __import__(pkg_name) 
>>> >> >> > [dochtml]   File 
>>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>> line 59, in  
>>> >> >> > [dochtml] import sage.all 
>>> >> >> > [dochtml]   File 
>>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
>>> 119, in  
>>> >> >> > [dochtml] from sage.misc.all   import * # takes 
>>> a while 
>>> >> >> > [dochtml]   File 
>>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
>>> line 84, in  
>>> >> >> > [dochtml] from .functional import (additive_order, 
>>> >> >> > [dochtml]   File 
>>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py",
>>>  
>>> line 27, in  
>>> >> >> > [dochtml] from sage.rings.complex_double import CDF 
>>> >> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object 
>>> file: No such fil

Re: [sage-release] Re: Sage 9.1.rc5 released

2020-05-16 Thread Emmanuel Charpentier 
Forgotten attachment...

Le samedi 16 mai 2020 14:47:50 UTC+2, Emmanuel Charpentier a écrit :
>
> On Debian testing running on core i7 + 16 GB RAM:
>
>- upgrading 9.1.rc3 to 9.1.rc5 via make ptestlong *fails* (see above) ; 
>- rebuilding afresh (make distclean ; make config ; ./configure ; make 
>ptestlong) succeeds with one transient error (timeout) and 10 
>permanent errors : 
>
> File Result P/T 
> src/sage/tests/parigp.py Timed out T 
> src/sage/schemes/elliptic_curves/ell_number_field.py 3 doctests failed P 
> src/sage/rings/number_field/number_field.py 7 doctests failed P 
> src/sage/rings/number_field/number_field_element.pyx 1 doctest failed P 
> src/sage/rings/number_field/number_field_ideal.py 2 doctests failed P 
> src/sage/numerical/backends/glpk_backend.pyx 1 doctest failed P 
> src/sage/lfunctions/dokchitser.py 2 doctests failed P 
> src/sage/rings/polynomial/polynomial_quotient_ring.py 2 doctests failed P 
> src/sage/lfunctions/pari.py 1 doctest failed P 
> src/sage/rings/number_field/unit_group.py 1 doctest failed P 
> src/sage/libs/glpk/error.pyx 1 doctest failed P 
>
> The timeout wasn’t observed already ; all other errors were. The result of 
> the retesting of initially failing tests is attached as chkerrs.txt.
>
> HTH,
>
> Le samedi 16 mai 2020 12:22:44 UTC+2, Emmanuel Charpentier a écrit :
>
> Well, I'm still stuck.
>>
>> A data point : inna dplicate of this tree, make distclean, make config, 
>> ./configure, make succeeds in buildig Sage 9.1.rc5. ptestlong underway.
>>
>> HTH,
>>
>> Le vendredi 15 mai 2020 13:21:35 UTC+2, Emmanuel Charpentier a écrit :
>>>
>>> Same difference :
>>>
>>> charpent@zen-book-flip:/usr/local/sage-9$ sage -sh
>>>
>>> Starting subshell with Sage environment variables set.  Don't forget
>>> to exit when you are done.  Beware:
>>>  * Do not do anything with other copies of Sage on your system.
>>>  * Do not use this for installing Sage packages using "sage -i" or for
>>>running "make" at Sage's root directory.  These should be done
>>>outside the Sage shell.
>>>
>>> Bypassing shell configuration files...
>>>
>>> Note: SAGE_ROOT=/usr/local/sage-9
>>> (sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
>>> ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun 
>>> fichier ou dossier de ce type
>>> (sage-sh) charpent@zen-book-flip:sage-9$ exit
>>> exit
>>> Exited Sage subshell.
>>>
>>>
>>> Le vendredi 15 mai 2020 12:29:46 UTC+2, Dima Pasechnik a écrit :

 On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier 
  wrote: 
 > 
 > Nothing : 
 > 
 > charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* 
 > ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de 
 ce type 
 > 
 it had to be run under sage -sh, to set $SAGE_LOCAL 
 meaningfully. 

 > 
 > Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit : 
 >> 
 >> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier 
 >>  wrote: 
 >> > 
 >> > This I was aware of and rebuilt them (successfully, it seems : I 
 rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... 
 >> > 
 >> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : 
 >> >> 
 >> >> I also needed to rebuild the other deps of gsl, ie giac and 
 >> >> fflas_ffpack - which you had to uninstall just as you did for 
 cvxopt 
 >> >> 
 >> >> 
 >> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier 
 >> >>  wrote: 
 >> >> > 
 >> >> > Thank you, Dima ! 
 >> >> > 
 >> >> > However, this isn't enough. Friom the relevant portion of 
 install.log : 
 >> >> > 
 >> >> > [dochtml] Traceback (most recent call last): 
 >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in 
 _run_module_as_main 
 >> >> > [dochtml] mod_name, mod_spec, code = 
 _get_module_details(mod_name, _Error) 
 >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in 
 _get_module_details 
 >> >> > [dochtml] return _get_module_details(pkg_main_name, error) 
 >> >> > [dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in 
 _get_module_details 
 >> >> > [dochtml] __import__(pkg_name) 
 >> >> > [dochtml]   File 
 "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
  
 line 59, in  
 >> >> > [dochtml] import sage.all 
 >> >> > [dochtml]   File 
 "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 
 119, in  
 >> >> > [dochtml] from sage.misc.all   import * # takes 
 a while 
 >> >> > [dochtml]   File 
 "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", 
 line 84, in  
 >> >> > [dochtml] from .functional import (additive_order, 
 >> >> > [dochtml]   File 
 "/usr/local/sage-9/local/lib/p