[sage-release] Re: Sage 9.2.beta1 released
This might help for some of the failing internet tests:
https://trac.sagemath.org/ticket/29787
On Thursday, June 25, 2020 at 6:29:42 AM UTC+10 Sébastien Labbé wrote:
> Testing various optional and external packages (on June 15, but I am
> reporting only now sorry for the delay), I get
>
> Using
> --optional=4ti2,cbc,ccache,cryptominisat,dot2tex,e_antic,external,fricas,glucose,latte_int,lidia,lrslib,memlimit,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin,sage_numerical_backends_cplex,sage_numerical_backends_gurobi
>
> --
> sage -t --long src/sage/combinat/matrices/hadamard_matrix.py # 1 doctest
> failed
> sage -t --long src/sage/combinat/quickref.py # 1 doctest failed
> sage -t --long src/sage/combinat/species/library.py # 1 doctest failed
> sage -t --long src/sage/combinat/tutorial.py # 1 doctest failed
> sage -t --long src/sage/databases/findstat.py # 17 doctests failed
> sage -t --long src/sage/databases/oeis.py # 1 doctest failed
> sage -t --long src/sage/geometry/polyhedron/base.py # Bad exit: 1
> sage -t --long src/sage/graphs/generators/smallgraphs.py # 2 doctests
> failed
> sage -t --long src/sage/sat/boolean_polynomials.py # 1 doctest failed
> --
> External software detected for doctesting:
> cplex,ffmpeg,graphviz,imagemagick,internet,latex,pandoc
>
> Rerunning failed tests, I get
>
> --
> sage -t --long src/sage/combinat/quickref.py # 1 doctest failed
> sage -t --long src/sage/combinat/species/library.py # 1 doctest failed
> sage -t --long src/sage/combinat/tutorial.py # 1 doctest failed
> sage -t --long src/sage/databases/findstat.py # 17 doctests failed
> sage -t --long src/sage/databases/oeis.py # 1 doctest failed
> sage -t --long src/sage/geometry/polyhedron/base.py # Bad exit: 1
> sage -t --long src/sage/graphs/generators/smallgraphs.py # 2 doctests
> failed
> --
> External software detected for doctesting: internet
>
>
> Many of them are related to recent changes in oeis, see below.
>
>
> sage -t --long src/sage/combinat/quickref.py
> **
> File "src/sage/combinat/quickref.py", line 9, in sage.combinat.quickref
> Failed example:
> s[0].programs() # optional - internet
> Expected:
> 0: (PARI) {a(n) = if( n<0, 0, n!^2 * 4^n * polcoeff( 1 / besselj(0, x
> + x * O(x^(2*n))), 2*n))}; /* _Michael Somos_, May 17 2004 */
> Got:
> [('maple', 0: A000275 := proc(n) sum(z^k/k!^2, k = 0..infinity);
> 1: series(%^x, z=0, n+1): n!^2*coeff(%,z,n); add(abs(coeff(%,x,k)),
> k=0..n) end:
> 2: seq(A000275(n), n=0..17); # _Peter Luschny_, May 27 2017),
> ('mathematica',
> 0: a[0] = 1; a[n_] := a[n] = Sum[(-1)^(r+n+1)*Binomial[n, r]^2 a[r],
> {r, 0, n-1}]; Table[a[n], {n, 0, 17}] (* _Jean-François Alcover_, Aug 05
> 2013 *)
> 1: CoefficientList[Series[1/BesselJ[0,Sqrt[4*x]], {x, 0, 20}], x]*
> Range[0, 20]!^2 (* _Vaclav Kotesovec_, Mar 02 2014 *)
> 2: a[ n_] := If[ n < 0, 0, (n! 2^n)^2 SeriesCoefficient[ 1 /
> BesselJ[ 0, x], {x, 0, 2 n}]]; (* _Michael Somos_, Aug 20 2015 *)),
> ('pari',
> 0: {a(n) = if( n<0, 0, n!^2 * 4^n * polcoeff( 1 / besselj(0, x + x *
> O(x^(2*n))), 2*n))}; /* _Michael Somos_, May 17 2004 */)]
> **
> 1 item had failures:
>1 of 22 in sage.combinat.quickref
> 5 not tested tests not run
> 0 tests not run because we ran out of time
> [21 tests, 1 failure, 3.06 s]
>
>
> sage -t --long src/sage/combinat/species/library.py
> **
> File "src/sage/combinat/species/library.py", line 104, in
> sage.combinat.species.library.BinaryTreeSpecies
> Failed example:
> oeis(seq)[0] # optional -- internet
> Expected:
> A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
> (2n)!/(n!(n+1)!). Also called Segner numbers.
> Got:
> A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
> (2n)!/(n!(n+1)!).
> **
> 1 item had failures:
>1 of 10 in sage.combinat.species.library.BinaryTreeSpecies
> 0 tests not run because we ran out of time
> [23 tests, 1 failure, 4.48 s]
>
>
>
> sage -t --long src/sage/combinat/tutorial.py
> **
> File "src/sage/combinat/tutorial.py", line 224, in sage.combinat.tutorial
> Failed example:
> oeis([1,1,2,5,14])# optional -- internet
> Expected:
> 0: A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
> (2n)!/(n!(n+1)!). Also cal
[sage-release] Re: Sage 9.2.beta1 released
Testing various optional and external packages (on June 15, but I am
reporting only now sorry for the delay), I get
Using
--optional=4ti2,cbc,ccache,cryptominisat,dot2tex,e_antic,external,fricas,glucose,latte_int,lidia,lrslib,memlimit,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin,sage_numerical_backends_cplex,sage_numerical_backends_gurobi
--
sage -t --long src/sage/combinat/matrices/hadamard_matrix.py # 1 doctest
failed
sage -t --long src/sage/combinat/quickref.py # 1 doctest failed
sage -t --long src/sage/combinat/species/library.py # 1 doctest failed
sage -t --long src/sage/combinat/tutorial.py # 1 doctest failed
sage -t --long src/sage/databases/findstat.py # 17 doctests failed
sage -t --long src/sage/databases/oeis.py # 1 doctest failed
sage -t --long src/sage/geometry/polyhedron/base.py # Bad exit: 1
sage -t --long src/sage/graphs/generators/smallgraphs.py # 2 doctests
failed
sage -t --long src/sage/sat/boolean_polynomials.py # 1 doctest failed
--
External software detected for doctesting:
cplex,ffmpeg,graphviz,imagemagick,internet,latex,pandoc
Rerunning failed tests, I get
--
sage -t --long src/sage/combinat/quickref.py # 1 doctest failed
sage -t --long src/sage/combinat/species/library.py # 1 doctest failed
sage -t --long src/sage/combinat/tutorial.py # 1 doctest failed
sage -t --long src/sage/databases/findstat.py # 17 doctests failed
sage -t --long src/sage/databases/oeis.py # 1 doctest failed
sage -t --long src/sage/geometry/polyhedron/base.py # Bad exit: 1
sage -t --long src/sage/graphs/generators/smallgraphs.py # 2 doctests
failed
--
External software detected for doctesting: internet
Many of them are related to recent changes in oeis, see below.
sage -t --long src/sage/combinat/quickref.py
**
File "src/sage/combinat/quickref.py", line 9, in sage.combinat.quickref
Failed example:
s[0].programs() # optional - internet
Expected:
0: (PARI) {a(n) = if( n<0, 0, n!^2 * 4^n * polcoeff( 1 / besselj(0, x +
x * O(x^(2*n))), 2*n))}; /* _Michael Somos_, May 17 2004 */
Got:
[('maple', 0: A000275 := proc(n) sum(z^k/k!^2, k = 0..infinity);
1: series(%^x, z=0, n+1): n!^2*coeff(%,z,n); add(abs(coeff(%,x,k)),
k=0..n) end:
2: seq(A000275(n), n=0..17); # _Peter Luschny_, May 27 2017),
('mathematica',
0: a[0] = 1; a[n_] := a[n] = Sum[(-1)^(r+n+1)*Binomial[n, r]^2 a[r],
{r, 0, n-1}]; Table[a[n], {n, 0, 17}] (* _Jean-François Alcover_, Aug 05
2013 *)
1: CoefficientList[Series[1/BesselJ[0,Sqrt[4*x]], {x, 0, 20}], x]*
Range[0, 20]!^2 (* _Vaclav Kotesovec_, Mar 02 2014 *)
2: a[ n_] := If[ n < 0, 0, (n! 2^n)^2 SeriesCoefficient[ 1 / BesselJ[
0, x], {x, 0, 2 n}]]; (* _Michael Somos_, Aug 20 2015 *)),
('pari',
0: {a(n) = if( n<0, 0, n!^2 * 4^n * polcoeff( 1 / besselj(0, x + x *
O(x^(2*n))), 2*n))}; /* _Michael Somos_, May 17 2004 */)]
**
1 item had failures:
1 of 22 in sage.combinat.quickref
5 not tested tests not run
0 tests not run because we ran out of time
[21 tests, 1 failure, 3.06 s]
sage -t --long src/sage/combinat/species/library.py
**
File "src/sage/combinat/species/library.py", line 104, in
sage.combinat.species.library.BinaryTreeSpecies
Failed example:
oeis(seq)[0] # optional -- internet
Expected:
A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
(2n)!/(n!(n+1)!). Also called Segner numbers.
Got:
A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
(2n)!/(n!(n+1)!).
**
1 item had failures:
1 of 10 in sage.combinat.species.library.BinaryTreeSpecies
0 tests not run because we ran out of time
[23 tests, 1 failure, 4.48 s]
sage -t --long src/sage/combinat/tutorial.py
**
File "src/sage/combinat/tutorial.py", line 224, in sage.combinat.tutorial
Failed example:
oeis([1,1,2,5,14])# optional -- internet
Expected:
0: A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
(2n)!/(n!(n+1)!). Also called Segner numbers.
1: ...
2: ...
Got:
0: A000108: Catalan numbers: C(n) = binomial(2n,n)/(n+1) =
(2n)!/(n!(n+1)!).
1: A022562: Number of connected claw-free unlabeled graphs on n nodes.
2: A124302: Number of set partitions with at most 3 blocks; number of
Dyck paths of height at most 4; dimension of space of symmetric polynomials
[sage-release] Re: Sage 9.2.beta1 released
A possibly related ticket: https://trac.sagemath.org/ticket/28008 On Wednesday, June 17, 2020 at 9:41:43 AM UTC-7, kcrisman wrote: > > On Mac OS X 10.11. Upgrading via git pull trac develop and make from > somewhere in the 9.0 betas, I get a lot of good things, until: > > mkdir ../../../../library/tools/libs > > installing 'sysdata.rda' > > dyld: Library not loaded: > /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib > > Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib > > Reason: image not found > > /bin/bash: line 1: 24759 Doneecho > "tools:::sysdata2LazyLoadDB(\"./R/sysdata.rda\",\"../../../library/tools/R\")" > > 24760 Trace/BPT trap: 5 | R_DEFAULT_PACKAGES=NULL LC_ALL=C > R_ENABLE_JIT=0 TZ=UTC ../../../bin/R --vanilla --slave > > make[8]: *** [sysdata] Error 133 > > make[7]: *** [all] Error 2 > > make[6]: *** [R] Error 1 > > make[5]: *** [R] Error 1 > > make[4]: *** [R] Error 1 > > > > > Error building r-3.6.2.p0 > > > > > > real2m5.131s > > user0m47.882s > > sys 0m46.001s > > > > Error installing package r-3.6.2.p0 > > > > > $ ls local/lib/libopenblas[tab] > > libopenblas.0.dyliblibopenblas.dylib > libopenblas_haswellp-r0.3.9.dylib > > > So I'm not sure why it's asking for an older version of libopenblas. Full > R log at http://www.math.gordon.edu/~kcrisman/r-3.6.2.p0.log > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/e41416e6-3a4e-46c4-b8eb-93a6ae3e9a91o%40googlegroups.com.
Re: [sage-release] Re: Sage 9.2.beta1 released
On Wed, Jun 17, 2020 at 6:38 PM kcrisman wrote: > > > > >> >> mkdir ../../../../library/tools/libs >> >> installing 'sysdata.rda' >> >> dyld: Library not loaded: >> /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib >> >> Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib > > > For reference, doing > > $ rm -rf local/lib/R/ > > ended up solving the problem. But that seems like a bug - shouldn't the > previous R install properly be deleted, in our current paradigm of first > uninstalling (if I understand it correctly)? yes, it appears to be a bug (macOS-specific?). Probably the list of files installed by R spkg is incomplete, and so what's in the list is removed, but this one is not. You can see the file list in local/var/lib/sage/installed/ and check whether libR.dylib is there. HTH Dima > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/f50588d7-2094-498a-870c-b63716e105d3o%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq0Qk1NziyquXC6bL5ajoFMaFPkAD07m6AMa%3DLE17gPGaA%40mail.gmail.com.
[sage-release] Re: Sage 9.2.beta1 released
> mkdir ../../../../library/tools/libs > > installing 'sysdata.rda' > > dyld: Library not loaded: > /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib > > Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib > > For reference, doing $ rm -rf local/lib/R/ ended up solving the problem. But that seems like a bug - shouldn't the previous R install properly be deleted, in our current paradigm of first uninstalling (if I understand it correctly)? -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/f50588d7-2094-498a-870c-b63716e105d3o%40googlegroups.com.
[sage-release] Re: Sage 9.2.beta1 released
On Mac OS X 10.11. Upgrading via git pull trac develop and make from somewhere in the 9.0 betas, I get a lot of good things, until: mkdir ../../../../library/tools/libs installing 'sysdata.rda' dyld: Library not loaded: /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib Reason: image not found /bin/bash: line 1: 24759 Doneecho "tools:::sysdata2LazyLoadDB(\"./R/sysdata.rda\",\"../../../library/tools/R\")" 24760 Trace/BPT trap: 5 | R_DEFAULT_PACKAGES=NULL LC_ALL=C R_ENABLE_JIT=0 TZ=UTC ../../../bin/R --vanilla --slave make[8]: *** [sysdata] Error 133 make[7]: *** [all] Error 2 make[6]: *** [R] Error 1 make[5]: *** [R] Error 1 make[4]: *** [R] Error 1 Error building r-3.6.2.p0 real2m5.131s user0m47.882s sys 0m46.001s Error installing package r-3.6.2.p0 $ ls local/lib/libopenblas[tab] libopenblas.0.dyliblibopenblas.dylib libopenblas_haswellp-r0.3.9.dylib So I'm not sure why it's asking for an older version of libopenblas. Full R log at http://www.math.gordon.edu/~kcrisman/r-3.6.2.p0.log -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/46fe726e-0808-4a2e-a1de-e1aa3b361289o%40googlegroups.com.
