[sage-release] Re: Sage 9.5.rc4 released

[Samuel Lelievre]

2022-01-24 21:20 UTC, Volker Braun on sage-release:
>
> 97d550d15c (tag: 9.5.rc4, trac/develop) Updated SageMath version to 
9.5.rc4

On Debian 10 buster, occasional `sagemath_doc_html` failure,
tracked at

- Sage Trac ticket 33139
Fix sagemath_doc_html-none build failure
https://trac.sagemath.org/ticket/33139

On that platform, `make doc-clean doc-uninstall`
or `make distclean` allow to get past that failure:
a subsequent `make` succeeds.

After that, testing with `make -s V=0 ptestlong` fails on two files:
```
... src/sage/features/interfaces.py # Timed out
... src/sage/game_theory/parser.py # 2 doctests failed
```

I opened ticket #33248 for the timeout:

- Fix timeout in feature test for Mathematica
  https://trac.sagemath.org/ticket/33248

and there is already a positively reviewed ticket about
the `game_theory/parser.py` failed doctests:

- lrslib: fix doctest in game_theory/parser.py
  https://trac.sagemath.org/ticket/33101

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[sage-release] Re: Sage 9.5.rc4 released

[Emmanuel Charpentier]

On Debian testing running on core i7 + 16 GB RAM, I attempted (see there 
) to force the use 
of Sage-installed pari, which somehow triggered the use of sage’s giac ; 
this didn’t solve my (other) problem.
Re-forcing the use of system’s pari and giac and running ptestlong gets me :

sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/libs/giac/giac.pyx  # 4 doctests failed
sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/algebras/quantum_groups/quantum_group_gap.py  # 1 doctest failed
sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/functions/min_max.py  # 2 doctests failed

The last two have been already reported and are cosmetic and numerical 
noise respectively. The first one is new, seems related to my 
re-installation of giac, and is serious ; it may be related to the problem 
I tried to solve elsewhere (in both cases, the problem appears to be raised 
in cython code).

Re running it gives :

charpent@zen-book-flip:/usr/local/sage-9$ sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/libs/giac/giac.pyx  # 4 doctests failed
Running doctests with ID 2022-01-30-11-45-24-32359913.
Git branch: develop
Using 
--optional=build,debian,debugpy,dot2tex,fricas,gap_packages,libsemigroups,pip,sage,sage_spkg
Features to be detected: 
4ti2,benzene,bliss,buckygen,conway_polynomials,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,ffmpeg,graphviz,imagemagick,jupymake,kenzo,latte_int,lrslib,mcqd,meataxe,pandoc,pdf2svg,plantri,pynormaliz,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.plot,sage.rings.number_field,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,sphinx,tdlib
Doctesting 1 file.
sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/libs/giac/giac.pyx
**
File "src/sage/libs/giac/giac.pyx", line 1464, in 
sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__._integer_
Failed example:
ZZ(c^1000)
Expected:
-233775163595
Got:
-1355808766
**
File "src/sage/libs/giac/giac.pyx", line 1466, in 
sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__._integer_
Failed example:
Mod(2,next_prime(2^40))^1000 - ZZ(c^1000)
Expected:
0
Got:
864662722370
**
File "src/sage/libs/giac/giac.pyx", line 1468, in 
sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__._integer_
Failed example:
2^320-(c^320).sage()
Exception raised:
Traceback (most recent call last):
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 694, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 1088, in compile_and_execute
exec(compiled, globs)
  File "", line 
1, in 
Integer(2)**Integer(320)-(c**Integer(320)).sage()
  File "sage/libs/giac/giac.pyx", line 1600, in 
sage.libs.giac.giac.Pygen.sage (build/cythonized/sage/libs/giac/giac.cpp:148122)
sig_on()
cysignals.signals.SignalError: Segmentation fault
**
File "src/sage/libs/giac/giac.pyx", line 1561, in 
sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__.sage
Failed example:
(a.sage())^6
Exception raised:
Traceback (most recent call last):
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 694, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 1088, in compile_and_execute
exec(compiled, globs)
  File "", line 1, 
in 
(a.sage())**Integer(6)
  File "sage/libs/giac/giac.pyx", line 1600, in 
sage.libs.giac.giac.Pygen.sage (build/cythonized/sage/libs/giac/giac.cpp:148122)
sig_on()
cysignals.signals.SignalError: Segmentation fault
**
2 items had failures:
   3 of   9 in 
sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__._integer_
   1 of  19 in sage.libs.giac.giac.encstring23.GiacSetting.Pygen.__iter__.sage
[295 tests, 4 failures, 3.90 s]
--
sage -t --long --warn-long 232.5 
--random-seed=190544560087993084851651335503239842385 
src/sage/lib

[sage-release] Re: Sage 9.5.rc4 released

[Sébastien Labbé]

On Ubuntu 18.04, running tests with optional/external packages, I get

Using 
--optional=4ti2,build,ccache,cryptominisat,debian,debugpy,dot2tex,e_antic,external,fricas,glucose,latte_int,lidia,normaliz,notedown,pandoc_attributes,pip,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin,sage_spkg
Features to be detected: 
4ti2,benzene,bliss,buckygen,conway_polynomials,cplex,csdp,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_jones_numfield,database_knotinfo,dvipng,ffmpeg,graphviz,gurobi,imagemagick,internet,jupymake,kenzo,latex,latex_package_tkz_graph,latte_int,lrslib,lualatex,macaulay2,magma,maple,mathematica,matlab,mcqd,meataxe,octave,pandoc,pdf2svg,pdflatex,plantri,pynormaliz,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.plot,sage.rings.number_field,sage.rings.real_double,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scilab,sphinx,tdlib,xelatex

--
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/combinat/designs/incidence_structures.py  # 1 doctest failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/databases/findstat.py  # 12 doctests failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/databases/oeis.py  # 1 doctest failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/graphs/generic_graph.py  # 2 doctests failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/graphs/graph.py  # 2 doctests failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/interfaces/mathematica.py  # 1 doctest failed
sage -t --long --random-seed=11339602991829791269082272991996031600 
src/sage/tests/cmdline.py  # 1 doctest failed
--
Features detected for doctesting: 
dvipng,ffmpeg,graphviz,imagemagick,internet,latex,latex_package_tkz_graph,lualatex,octave,pandoc,pdf2svg,pdflatex,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.plot,sage.rings.number_field,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx,xelatex

The following failures are dealt at https://trac.sagemath.org/ticket/33179 
(positive review, currently in the milestone 9.6):

sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/databases/findstat.py  # 12 doctests failed
sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/databases/oeis.py  # 1 doctest failed
sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/interfaces/mathematica.py  # 1 doctest failed

The following failures are known from a long time and are tracked at: 
https://trac.sagemath.org/ticket/25536

sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/combinat/designs/incidence_structures.py  # 1 doctest failed
sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/graphs/generic_graph.py  # 2 doctests failed
sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/graphs/graph.py  # 3 doctests failed
sage -t --long --random-seed=101941104305201234378272095268102773327 
src/sage/tests/cmdline.py  # 1 doctest failed

So no new failures to report.

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[sage-release] Re: Sage 9.5.rc4 released

[Sébastien Labbé]

> As suggested, I did "make doc-clean doc-uninstall" and I am currently 
> waiting for the result of make.
>

It worked:

[sagemath_doc_html-none] Build finished.
 

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[sage-release] Re: Sage 9.5.rc4 released

[Sébastien Labbé]

Upgrading from a recent rc, I get an error with doc building:

[sagemath_doc_html-none] installing. Log file: 
/home/slabbe/GitBox/sage/logs/pkgs/sagemath_doc_html-none.log
  [sagemath_doc_html-none] error installing, exit status 2. End of log 
file:   
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/tensorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/tens
orfield_paral' 
   
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/vector_bundle_fib
er' 
 
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/vector_bundle_fib
er_element' 
  
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/trivialization'
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/local_frame'
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/section_module'
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vector_bundle.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/section'
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vectorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/vect
orfield_module' 

 
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vectorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/vect
orfield'   
 
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vectorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/vect
orframe'   
   
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vectorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/auto
morphismfield_group'   
   
  [sagemath_doc_html-none]   [manifolds] 
/home/slabbe/GitBox/sage/src/doc/en/reference/manifolds/vectorfield.rst:4: 
WARNING: toctree contains reference to nonexisting document 
'sage/manifolds/differentiable/auto
morphismfield' 
  [sagemath_doc_html-none]   [manifolds] The inventory files are in 
local/share/doc/sage/inventory/en/reference/manifolds.
  [sagemath_doc_html-none]   Error building the documentation. 
 
  [sagemath_doc_html-none]   Traceback (most recent call last): 
  
  [sagemath_doc_html-none] File 
"/home/slabbe/GitBox/sage/local/lib/python3.9/runpy.py", line 197, in 
_run_module_as_main
  [sagemath_doc_html-none]   return _run_code(code, main_globals, None, 
   
  [sagemath_doc_html-none] File 
"/home/slabbe/GitBox/sage/local/lib/python3.9/runpy.py", line 87, in 
_run_code
  [sagemath_doc_html-none]   exec(code, run_globals)   
 
  [sagemath_doc_html-none] File 
"/home/slabbe/GitBox/sage/local/lib/python3.9/site-packages/sage_docbuild/__main__.py",
 
line 2, in 
  [sagemath_doc_html-none]   main() 

   
  [sagemath