[sage-release] Re: Sage 9.6.beta7 released

2022-04-06 Thread John H Palmieri
Quick work, thanks!

On Wednesday, April 6, 2022 at 12:33:08 PM UTC-7 arojas wrote:

> https://trac.sagemath.org/ticket/33647
>
> El miércoles, 6 de abril de 2022 a las 21:23:05 UTC+2, John H Palmieri 
> escribió:
>
>> I'm getting a doctest failure (OS X, iMac Pro):
>>
>> sage -t --random-seed=282087015394155253226119703033530733169 
>> src/sage/libs/pari/tests.py
>> **
>> File "src/sage/libs/pari/tests.py", line 786, in sage.libs.pari.tests
>> Failed example:
>> pari('x+O(x^8)').cosh()
>> Expected:
>> 1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + O(x^8)
>> Got:
>> 1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + 1/40320*x^8 + O(x^9)
>> **
>>
>> This is using pari from homebrew, pari updated this morning to version 
>> 2.13.4.
>>
>> On Saturday, April 2, 2022 at 12:12:48 PM UTC-7 Volker Braun wrote:
>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
>>> 9.6.beta7
>>> 199ee74bdd Trac #33563: fix some tests of emptiness
>>> 596c5ebe69 Trac #33552: adjust error messages in toric/
>>> 36ffa34de1 Trac #33551: various details in pyx files
>>> b9c0c5cb3e Trac #33545: fix W391 in rings
>>> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
>>> 26c9c81022 Trac #33519: fix indentation in integration.pyx
>>> 6312320fb8 Trac #33517: fix W391 in categories
>>> eb33795b51 Trac #33516: fix W391 in schemes
>>> 2258189a8d Trac #33510: clean build/sage_bootstrap
>>> 23ac99956a Trac #33506: spaces around some % in combinat/
>>> 5b4fe73af3 Trac #33503: adjust a few more error messages
>>> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
>>> valuation
>>> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
>>> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
>>> a45aa86091 Trac #33604: Remove random_DAG from global namespace
>>> c55624e4dc Trac #33603: Fix Conic doctests
>>> 76167599cc Trac #33602: Deprecate the import of some element classes in 
>>> sage/ring/all.py
>>> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
>>> in rings/
>>> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
>>> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
>>> 8f750d97b3 Trac #33581: small cleanup for mathics.py
>>> a79b1b8baa Trac #33573: extend method cores to accept graphs with 
>>> multiple edges
>>> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
>>> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>>>  multiple_edges
>>> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
>>> graphics
>>> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
>>> quotient rings
>>> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
>>> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
>>> 08854a8167 Trac #33559: Fix bug in 
>>> sage.graphs.graph_coloring.vertex_coloring
>>> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
>>> fbc8bd05e9 Trac #33555: refresh the file subword.py
>>> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed 
>>> to run `make configure` (step 3)
>>> ce74d3217f Trac #33540: remove class inheritance of object in combinat
>>> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
>>> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
>>> b9cdb7c713 Trac #33529: Remove old thebe package
>>> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
>>> when pre-isomorphism is set
>>> 64bd36ebc8 Trac #32687: error in height difference bound
>>> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
>>> 3c6f5086b7 Trac #33585: doctest failure when doc html not 
>>> built/installed but sphinx is available in PYTHONPATH
>>> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 
>>> 1.8 to 1.10 (resp.1.9)
>>> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
>>> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
>>> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
>>> files unless they match the pytest file pattern
>>> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
>>> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
>>> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
>>> %display latex
>>> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
>>> function_field, doctest/test.py)
>>> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn 
>>> polynomials
>>> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_

[sage-release] Re: Sage 9.6.beta7 released

2022-04-06 Thread arojas
https://trac.sagemath.org/ticket/33647

El miércoles, 6 de abril de 2022 a las 21:23:05 UTC+2, John H Palmieri 
escribió:

> I'm getting a doctest failure (OS X, iMac Pro):
>
> sage -t --random-seed=282087015394155253226119703033530733169 
> src/sage/libs/pari/tests.py
> **
> File "src/sage/libs/pari/tests.py", line 786, in sage.libs.pari.tests
> Failed example:
> pari('x+O(x^8)').cosh()
> Expected:
> 1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + O(x^8)
> Got:
> 1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + 1/40320*x^8 + O(x^9)
> **
>
> This is using pari from homebrew, pari updated this morning to version 
> 2.13.4.
>
> On Saturday, April 2, 2022 at 12:12:48 PM UTC-7 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
>> 9.6.beta7
>> 199ee74bdd Trac #33563: fix some tests of emptiness
>> 596c5ebe69 Trac #33552: adjust error messages in toric/
>> 36ffa34de1 Trac #33551: various details in pyx files
>> b9c0c5cb3e Trac #33545: fix W391 in rings
>> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
>> 26c9c81022 Trac #33519: fix indentation in integration.pyx
>> 6312320fb8 Trac #33517: fix W391 in categories
>> eb33795b51 Trac #33516: fix W391 in schemes
>> 2258189a8d Trac #33510: clean build/sage_bootstrap
>> 23ac99956a Trac #33506: spaces around some % in combinat/
>> 5b4fe73af3 Trac #33503: adjust a few more error messages
>> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
>> valuation
>> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
>> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
>> a45aa86091 Trac #33604: Remove random_DAG from global namespace
>> c55624e4dc Trac #33603: Fix Conic doctests
>> 76167599cc Trac #33602: Deprecate the import of some element classes in 
>> sage/ring/all.py
>> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
>> in rings/
>> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
>> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
>> 8f750d97b3 Trac #33581: small cleanup for mathics.py
>> a79b1b8baa Trac #33573: extend method cores to accept graphs with 
>> multiple edges
>> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
>> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>>  multiple_edges
>> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
>> graphics
>> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
>> quotient rings
>> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
>> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
>> 08854a8167 Trac #33559: Fix bug in 
>> sage.graphs.graph_coloring.vertex_coloring
>> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
>> fbc8bd05e9 Trac #33555: refresh the file subword.py
>> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed 
>> to run `make configure` (step 3)
>> ce74d3217f Trac #33540: remove class inheritance of object in combinat
>> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
>> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
>> b9cdb7c713 Trac #33529: Remove old thebe package
>> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
>> when pre-isomorphism is set
>> 64bd36ebc8 Trac #32687: error in height difference bound
>> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
>> 3c6f5086b7 Trac #33585: doctest failure when doc html not built/installed 
>> but sphinx is available in PYTHONPATH
>> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 1.8 
>> to 1.10 (resp.1.9)
>> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
>> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
>> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
>> files unless they match the pytest file pattern
>> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
>> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
>> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
>> %display latex
>> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
>> function_field, doctest/test.py)
>> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn 
>> polynomials
>> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_functional
>> c399fc096b Trac #32364: every quaternion lies in every quaternion order
>> 5166ac1413 Trac #20343: Add file `sage/misc/latex_standalone.py` and 
>> class `TikzPicture`
>>

[sage-release] Re: Sage 9.6.beta7 released

2022-04-06 Thread John H Palmieri
I'm getting a doctest failure (OS X, iMac Pro):

sage -t --random-seed=282087015394155253226119703033530733169 
src/sage/libs/pari/tests.py
**
File "src/sage/libs/pari/tests.py", line 786, in sage.libs.pari.tests
Failed example:
pari('x+O(x^8)').cosh()
Expected:
1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + O(x^8)
Got:
1 + 1/2*x^2 + 1/24*x^4 + 1/720*x^6 + 1/40320*x^8 + O(x^9)
**

This is using pari from homebrew, pari updated this morning to version 
2.13.4.

On Saturday, April 2, 2022 at 12:12:48 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
> 9.6.beta7
> 199ee74bdd Trac #33563: fix some tests of emptiness
> 596c5ebe69 Trac #33552: adjust error messages in toric/
> 36ffa34de1 Trac #33551: various details in pyx files
> b9c0c5cb3e Trac #33545: fix W391 in rings
> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
> 26c9c81022 Trac #33519: fix indentation in integration.pyx
> 6312320fb8 Trac #33517: fix W391 in categories
> eb33795b51 Trac #33516: fix W391 in schemes
> 2258189a8d Trac #33510: clean build/sage_bootstrap
> 23ac99956a Trac #33506: spaces around some % in combinat/
> 5b4fe73af3 Trac #33503: adjust a few more error messages
> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
> valuation
> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
> a45aa86091 Trac #33604: Remove random_DAG from global namespace
> c55624e4dc Trac #33603: Fix Conic doctests
> 76167599cc Trac #33602: Deprecate the import of some element classes in 
> sage/ring/all.py
> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
> in rings/
> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
> 8f750d97b3 Trac #33581: small cleanup for mathics.py
> a79b1b8baa Trac #33573: extend method cores to accept graphs with multiple 
> edges
> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>  multiple_edges
> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
> graphics
> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
> quotient rings
> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
> 08854a8167 Trac #33559: Fix bug in 
> sage.graphs.graph_coloring.vertex_coloring
> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
> fbc8bd05e9 Trac #33555: refresh the file subword.py
> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed to 
> run `make configure` (step 3)
> ce74d3217f Trac #33540: remove class inheritance of object in combinat
> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
> b9cdb7c713 Trac #33529: Remove old thebe package
> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
> when pre-isomorphism is set
> 64bd36ebc8 Trac #32687: error in height difference bound
> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
> 3c6f5086b7 Trac #33585: doctest failure when doc html not built/installed 
> but sphinx is available in PYTHONPATH
> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 1.8 
> to 1.10 (resp.1.9)
> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
> files unless they match the pytest file pattern
> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
> %display latex
> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
> function_field, doctest/test.py)
> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn polynomials
> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_functional
> c399fc096b Trac #32364: every quaternion lies in every quaternion order
> 5166ac1413 Trac #20343: Add file `sage/misc/latex_standalone.py` and class 
> `TikzPicture`
> 0991f82d57 Trac #33547: Update sympy to 1.10.1
> 0d0bb77fb2 Trac #33508: OpenSSL 3.0.2 security update
> 56d233b1f6 Trac #33227: SystemError: calling remove_from_pari_stack() 
> inside sig_on() in expression.pyx
> 43474c96d5 (tag: 9.6.

[sage-release] Re: Sage 9.6.beta7 released

2022-04-05 Thread Antonio Rojas
Running 'sage -t --installed' gives one new failure here:

sage -t --long --random-seed=169358931466360395563136887940502246251 
/usr/share/doc/sage/html/en/reference/jupyter_execute/sage/plot/plot3d/plot3d.py
 

   SyntaxError in doctesting framework 
** 
Traceback (most recent call last): 
 File "/usr/lib/python3.10/site-packages/sage/doctest/forker.py", line 
2490, in __call__ 
   doctests, extras = self._run(runner, options, results) 
 File "/usr/lib/python3.10/site-packages/sage/doctest/forker.py", line 
2538, in _run 
   doctests, extras = self.source.create_doctests(sage_namespace) 
 File "/usr/lib/python3.10/site-packages/sage/doctest/sources.py", line 
751, in create_doctests 
   load(filename, namespace) # errors raised here will be caught in 
DocTestTask 
 File "/usr/lib/python3.10/site-packages/sage/repl/load.py", line 251, in 
load 
   code = compile(f.read(), fpath, 'exec') 
 File "./plot3d.py", line 278 
   cylindrical(r, theta, z) = [r*cos(theta), r*sin(theta), z] 
    
SyntaxError: cannot assign to function call here. Maybe you meant '==' 
instead of '='? 



El sábado, 2 de abril de 2022 a las 21:12:48 UTC+2, Volker Braun escribió:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
> 9.6.beta7
> 199ee74bdd Trac #33563: fix some tests of emptiness
> 596c5ebe69 Trac #33552: adjust error messages in toric/
> 36ffa34de1 Trac #33551: various details in pyx files
> b9c0c5cb3e Trac #33545: fix W391 in rings
> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
> 26c9c81022 Trac #33519: fix indentation in integration.pyx
> 6312320fb8 Trac #33517: fix W391 in categories
> eb33795b51 Trac #33516: fix W391 in schemes
> 2258189a8d Trac #33510: clean build/sage_bootstrap
> 23ac99956a Trac #33506: spaces around some % in combinat/
> 5b4fe73af3 Trac #33503: adjust a few more error messages
> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
> valuation
> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
> a45aa86091 Trac #33604: Remove random_DAG from global namespace
> c55624e4dc Trac #33603: Fix Conic doctests
> 76167599cc Trac #33602: Deprecate the import of some element classes in 
> sage/ring/all.py
> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
> in rings/
> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
> 8f750d97b3 Trac #33581: small cleanup for mathics.py
> a79b1b8baa Trac #33573: extend method cores to accept graphs with multiple 
> edges
> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>  multiple_edges
> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
> graphics
> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
> quotient rings
> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
> 08854a8167 Trac #33559: Fix bug in 
> sage.graphs.graph_coloring.vertex_coloring
> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
> fbc8bd05e9 Trac #33555: refresh the file subword.py
> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed to 
> run `make configure` (step 3)
> ce74d3217f Trac #33540: remove class inheritance of object in combinat
> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
> b9cdb7c713 Trac #33529: Remove old thebe package
> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
> when pre-isomorphism is set
> 64bd36ebc8 Trac #32687: error in height difference bound
> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
> 3c6f5086b7 Trac #33585: doctest failure when doc html not built/installed 
> but sphinx is available in PYTHONPATH
> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 1.8 
> to 1.10 (resp.1.9)
> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
> files unless they match the pytest file pattern
> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
> %display latex
> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
>

[sage-release] Re: Sage 9.6.beta7 released

2022-04-05 Thread Eric Gourgoulhon
Thanks for the new release.
On Ubuntu 20.04 running on Xeon E5-2623 + 16 GB RAM:

- incremental build (-j16) from Sage 9.6.beta6 with system python (3.8.10): 
OK
- make ptestlong --> "All tests passed!"

Eric. 

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[sage-release] Re: Sage 9.6.beta7 released

2022-04-04 Thread Sébastien Labbé
Thanks for the release. I am quite happy that #20343 is now in!

Testing on Ubuntu 18.04 with few optional and external packages, I get:

--
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/combinat/designs/incidence_structures.py  # 1 doctest failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/geometry/polyhedron/base.py  # 1 doctest failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/graphs/generic_graph.py  # 2 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/graphs/graph.py  # 3 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/interfaces/expect.py  # 2 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/interfaces/mathematica.py  # 1 doctest failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/numerical/backends/glpk_backend.pyx  # 4 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/numerical/mip.pyx  # 8 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/tests/books/computational-mathematics-with-sagemath/lp_doctest.py 
 # 2 doctests failed
sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/tests/cmdline.py  # 1 doctest failed
--
Features detected for doctesting: 
dvipng,ffmpeg,graphviz,imagemagick,internet,latex,latex_package_tkz_graph,lualatex,nauty,octave,palp,pandoc,pdf2svg,pdflatex,pdftocairo,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.plot,sage.rings.number_field,sage.rings.padics,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx,xelatex

Rerunning failed doctests, I get:

--
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/combinat/designs/incidence_structures.py  # 1 doctest failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/geometry/polyhedron/base.py  # 1 doctest failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/graphs/generic_graph.py  # 2 doctests failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/graphs/graph.py  # 3 doctests failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/numerical/backends/glpk_backend.pyx  # 4 doctests failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/numerical/mip.pyx  # 8 doctests failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/tests/books/computational-mathematics-with-sagemath/lp_doctest.py 
 # 2 doctests failed
sage -t --long --random-seed=253857822428465768945439832358430332549 
src/sage/tests/cmdline.py  # 1 doctest failed
--
Features detected for doctesting: 
graphviz,internet,latex,pandoc,sage.combinat,sage.graphs,sage.groups,sage.rings.number_field,sage.symbolic


As you see, failures with interfaces/mathmematica.py and 
interfaces/expect.py did not reproduce. I copy the non-reproducible 
failures below.


sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/interfaces/mathematica.py
**
File "src/sage/interfaces/mathematica.py", line 1228, in 
sage.interfaces.mathematica.parse_moutput_from_json
Failed example:
sorted(L) # optional 
internet
Expected:
['-Cos[x]', '{x == 0}', '{x == Pi C[1], Element[C[1], Integers]}']
Got:
['-Cos[x]']
**
1 item had failures:
   1 of  10 in sage.interfaces.mathematica.parse_moutput_from_json
121 mathematica tests not run
3 mathematicafrontend tests not run
0 tests not run because we ran out of time
[35 tests, 1 failure, 9.63 s]

sage -t --long --random-seed=290149003222784740688944140527868655673 
src/sage/interfaces/expect.py
**
File "src/sage/interfaces/expect.py", line 920, in 
sage.interfaces.expect.Expect._eval_line
Failed example:
singular.interrupt()
Expected:
True
Got:
False
**
File "src/sage/interfaces/expect.py", line 926, in 
sage.interfaces.expect.Expect._eval_line
Failed example:
singular('2+3')
Expected:
Singular crashed -- automatically restarting.
5
Got:
5
**
1 item had failures:
   2 of  16 in sage.interfaces.expect.Expect._eval_line

[sage-release] Re: Sage 9.6.beta7 released

2022-04-03 Thread Emmanuel Charpentier


On Debian testing running on core i7 + 16 GB RAM, upgrading 9.6.beta6 to 
9.6.beta7 and running ptestlong gives one transient failure :

HTH,

which passes when ran standalone. Original failure (in ptestlong.log) :

sage -t --long --warn-long 207.5 
--random-seed=104190692585737511304860911887747877058 
src/sage/schemes/cyclic_covers/cycliccover_finite_field.py  # 1 doctest failed

Original failure in ptestlong.log :

sage -t --long --warn-long 207.5 
--random-seed=104190692585737511304860911887747877058 
src/sage/plot/plot3d/base.pxd
[0 tests, 0.00 s]
sage -t --long --warn-long 207.5 
--random-seed=104190692585737511304860911887747877058 
src/sage/schemes/cyclic_covers/cycliccover_finite_field.py
**
File "src/sage/schemes/cyclic_covers/cycliccover_finite_field.py", line 1139, 
in 
sage.schemes.cyclic_covers.cycliccover_finite_field.CyclicCover_finite_field.frobenius_polynomial
Failed example:
CyclicCover(11, PolynomialRing(GF(1129), 'x')([-1] + [0]*(5-1) + 
[1])).frobenius_polynomial() # long time
Exception raised:
Traceback (most recent call last):
  File "sage/misc/cachefunc.pyx", line 1943, in 
sage.misc.cachefunc.CachedMethodCaller.__call__ 
(build/cythonized/sage/misc/cachefunc.c:10414)
return cache[k]
KeyError: ((11,), ())

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 695, in _run
self.compile_and_execute(example, compiler, test.globs)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/doctest/forker.py",
 line 1093, in compile_and_execute
exec(compiled, globs)
  File "",
 line 1, in 
CyclicCover(Integer(11), PolynomialRing(GF(Integer(1129)), 
'x')([-Integer(1)] + [Integer(0)]*(Integer(5)-Integer(1)) + 
[Integer(1)])).frobenius_polynomial() # long time
  File "sage/misc/cachefunc.pyx", line 2310, in 
sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ 
(build/cythonized/sage/misc/cachefunc.c:13024)
self.cache = f(self._instance)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/schemes/cyclic_covers/cycliccover_finite_field.py",
 line 1234, in frobenius_polynomial
F = self.frobenius_matrix(self._N0)
  File "sage/misc/cachefunc.pyx", line 1948, in 
sage.misc.cachefunc.CachedMethodCaller.__call__ 
(build/cythonized/sage/misc/cachefunc.c:10550)
w = self._instance_call(*args, **kwds)
  File "sage/misc/cachefunc.pyx", line 1824, in 
sage.misc.cachefunc.CachedMethodCaller._instance_call 
(build/cythonized/sage/misc/cachefunc.c:10016)
return self.f(self._instance, *args, **kwds)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/schemes/cyclic_covers/cycliccover_finite_field.py",
 line 1072, in frobenius_matrix
FrobP = _frobenius_matrix_p(self._N0)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/schemes/cyclic_covers/cycliccover_finite_field.py",
 line 1068, in _frobenius_matrix_p
] = self._frob(i, j + self._epsilon * self._r, N0)
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/schemes/cyclic_covers/cycliccover_finite_field.py",
 line 994, in _frob
self._initialize_fat_horizontal(
  File 
"/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/schemes/cyclic_covers/cycliccover_finite_field.py",
 line 738, in _initialize_fat_horizontal
DH = [elt[0, 0] for elt in interval_products(D0, D1, targets)]
  File "sage/schemes/hyperelliptic_curves/hypellfrob.pyx", line 140, in 
sage.schemes.hyperelliptic_curves.hypellfrob.interval_products 
(build/cythonized/sage/schemes/hyperelliptic_curves/hypellfrob.cpp:4007)
sig_on()
SystemError: calling remove_from_pari_stack() inside sig_on()
**
File "src/sage/schemes/cyclic_covers/cycliccover_finite_field.py", line 1142, 
in 
sage.schemes.cyclic_covers.cycliccover_finite_field.CyclicCover_finite_field.frobenius_polynomial
Warning, slow doctest:
CyclicCover(3, PolynomialRing(GF(1009^2), 'x')([-1] + [0]*(5-1) + 
[1])).frobenius_polynomial() # long time
Test ran for 261.78 s, check ran for 0.00 s
**
1 item had failures:
   1 of  60 in 
sage.schemes.cyclic_covers.cycliccover_finite_field.CyclicCover_finite_field.frobenius_polynomial
[168 tests, 1 failure, 402.34 s]

HTH,
​
Le samedi 2 avril 2022 à 21:12:48 UTC+2, Volker Braun a écrit :

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarbal

[sage-release] Re: Sage 9.6.beta7 released

2022-04-02 Thread Matthias Köppe
+1 on getting a release out. We have lots of improvements over 9.5

On Saturday, April 2, 2022 at 12:13:42 PM UTC-7 Volker Braun wrote:

> Also, we should make a new release soon. So if you have anything that you 
> want to be in 9.6 then now is the time to wrap it up ;)
>
> On Saturday, April 2, 2022 at 9:12:48 PM UTC+2 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
>> 9.6.beta7
>> 199ee74bdd Trac #33563: fix some tests of emptiness
>> 596c5ebe69 Trac #33552: adjust error messages in toric/
>> 36ffa34de1 Trac #33551: various details in pyx files
>> b9c0c5cb3e Trac #33545: fix W391 in rings
>> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
>> 26c9c81022 Trac #33519: fix indentation in integration.pyx
>> 6312320fb8 Trac #33517: fix W391 in categories
>> eb33795b51 Trac #33516: fix W391 in schemes
>> 2258189a8d Trac #33510: clean build/sage_bootstrap
>> 23ac99956a Trac #33506: spaces around some % in combinat/
>> 5b4fe73af3 Trac #33503: adjust a few more error messages
>> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
>> valuation
>> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
>> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
>> a45aa86091 Trac #33604: Remove random_DAG from global namespace
>> c55624e4dc Trac #33603: Fix Conic doctests
>> 76167599cc Trac #33602: Deprecate the import of some element classes in 
>> sage/ring/all.py
>> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
>> in rings/
>> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
>> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
>> 8f750d97b3 Trac #33581: small cleanup for mathics.py
>> a79b1b8baa Trac #33573: extend method cores to accept graphs with 
>> multiple edges
>> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
>> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>>  multiple_edges
>> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
>> graphics
>> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
>> quotient rings
>> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
>> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
>> 08854a8167 Trac #33559: Fix bug in 
>> sage.graphs.graph_coloring.vertex_coloring
>> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
>> fbc8bd05e9 Trac #33555: refresh the file subword.py
>> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed 
>> to run `make configure` (step 3)
>> ce74d3217f Trac #33540: remove class inheritance of object in combinat
>> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
>> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
>> b9cdb7c713 Trac #33529: Remove old thebe package
>> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
>> when pre-isomorphism is set
>> 64bd36ebc8 Trac #32687: error in height difference bound
>> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
>> 3c6f5086b7 Trac #33585: doctest failure when doc html not built/installed 
>> but sphinx is available in PYTHONPATH
>> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 1.8 
>> to 1.10 (resp.1.9)
>> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
>> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
>> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
>> files unless they match the pytest file pattern
>> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
>> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
>> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
>> %display latex
>> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
>> function_field, doctest/test.py)
>> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn 
>> polynomials
>> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_functional
>> c399fc096b Trac #32364: every quaternion lies in every quaternion order
>> 5166ac1413 Trac #20343: Add file `sage/misc/latex_standalone.py` and 
>> class `TikzPicture`
>> 0991f82d57 Trac #33547: Update sympy to 1.10.1
>> 0d0bb77fb2 Trac #33508: OpenSSL 3.0.2 security update
>> 56d233b1f6 Trac #33227: SystemError: calling remove_from_pari_stack() 
>> inside sig_on() in expression.pyx
>> 43474c96d5 (tag: 9.6.beta6) Updated SageMath version to 9.6.beta6
>>
>

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[sage-release] Re: Sage 9.6.beta7 released

2022-04-02 Thread Volker Braun
Also, we should make a new release soon. So if you have anything that you 
want to be in 9.6 then now is the time to wrap it up ;)

On Saturday, April 2, 2022 at 9:12:48 PM UTC+2 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to 
> 9.6.beta7
> 199ee74bdd Trac #33563: fix some tests of emptiness
> 596c5ebe69 Trac #33552: adjust error messages in toric/
> 36ffa34de1 Trac #33551: various details in pyx files
> b9c0c5cb3e Trac #33545: fix W391 in rings
> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling errors
> 26c9c81022 Trac #33519: fix indentation in integration.pyx
> 6312320fb8 Trac #33517: fix W391 in categories
> eb33795b51 Trac #33516: fix W391 in schemes
> 2258189a8d Trac #33510: clean build/sage_bootstrap
> 23ac99956a Trac #33506: spaces around some % in combinat/
> 5b4fe73af3 Trac #33503: adjust a few more error messages
> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive 
> valuation
> f516aabdee Trac #33400: Add pictures to various 3d graphics manual pages
> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code
> a45aa86091 Trac #33604: Remove random_DAG from global namespace
> c55624e4dc Trac #33603: Fix Conic doctests
> 76167599cc Trac #33602: Deprecate the import of some element classes in 
> sage/ring/all.py
> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, mostly 
> in rings/
> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs
> 4a8c685227 Trac #33583: Move integration and volume to Polyhedron_base7
> 8f750d97b3 Trac #33581: small cleanup for mathics.py
> a79b1b8baa Trac #33573: extend method cores to accept graphs with multiple 
> edges
> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository
> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and 
>  multiple_edges
> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D 
> graphics
> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial 
> quotient rings
> 76d0d33770 Trac #33567: finer category for cubic braid group quotients
> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups
> 08854a8167 Trac #33559: Fix bug in 
> sage.graphs.graph_coloring.vertex_coloring
> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ instead
> fbc8bd05e9 Trac #33555: refresh the file subword.py
> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is needed to 
> run `make configure` (step 3)
> ce74d3217f Trac #33540: remove class inheritance of object in combinat
> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild
> a5446dbaa4 Trac #33536: Some changes suggested by lgtm
> b9cdb7c713 Trac #33529: Remove old thebe package
> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect a-invariants 
> when pre-isomorphism is set
> 64bd36ebc8 Trac #32687: error in height difference bound
> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top level
> 3c6f5086b7 Trac #33585: doctest failure when doc html not built/installed 
> but sphinx is available in PYTHONPATH
> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from 1.8 
> to 1.10 (resp.1.9)
> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt
> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin
> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual Python 
> files unless they match the pytest file pattern
> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11
> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog
> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope of 
> %display latex
> baf6b19517 Trac #33443: slow doctest improvements (isogeny_small_degree, 
> function_field, doctest/test.py)
> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn polynomials
> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_functional
> c399fc096b Trac #32364: every quaternion lies in every quaternion order
> 5166ac1413 Trac #20343: Add file `sage/misc/latex_standalone.py` and class 
> `TikzPicture`
> 0991f82d57 Trac #33547: Update sympy to 1.10.1
> 0d0bb77fb2 Trac #33508: OpenSSL 3.0.2 security update
> 56d233b1f6 Trac #33227: SystemError: calling remove_from_pari_stack() 
> inside sig_on() in expression.pyx
> 43474c96d5 (tag: 9.6.beta6) Updated SageMath version to 9.6.beta6
>

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