Re: [sage-support] Cannot load session create in another version of sage
Le 30/08/2019 à 12:54, Simon King a écrit : Hi Steve, On Friday, August 30, 2019 at 11:55:45 AM UTC+2, Dima Pasechnik wrote: On Fri, Aug 30, 2019 at 12:48 PM 'SteveJJ' via sage-support > wrote: I saved a session when using sage 8.0. When I try to load that session into sage 8.8, I get errors such as: RuntimeError: invalid pickle data ValueError: unknown matrix implementation 'flint' over Symbolic Ring The full error output is below. Am I missing some packages or do I need to somehow convert the session file? I don't think that sage/load_session is guaranteed w.r.t. any kind of backward/forward compatibility. It relies on internals being unchanged, which is certainly not the case from one Sage version to another. If I understand correctly, saving/loading individual objects is supposed to be backwards compatible. This is not correct. Saving individual object is not supposed to be backward compatible. See https://trac.sagemath.org/ticket/28302 Vincent -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/839097c3-719f-25fd-4684-b4c9b41545dc%40gmail.com.
Re: [sage-support] sage crash report
Dear Oscar, You should tell precisely what is your installation of Sage that is broken. Looking at the crash report, I assume that you use Sage from the system. In this situation, you would better address your question to some Debian help forum or mailing list. For the bug you encountered, it has already been reported and apparently fixed https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=932367 Good luck Vincent Le 02/09/2019 à 20:39, o.castillo.felis...@gmail.com a écrit : Dear community, I've worked extensively with Sage on Debian, either source compiled or installed from the repository. Last month I update my system to Debian Bullseye, and since then I've been unable of using sage! I'm attaching the automatically generated crash report. I thank you in advance all possible help, since this is one of the programs I use in my daily work. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/9533d412-2819-4b41-928d-6947e754f04d%40gmail.com.
[sage-support] sage crash report
Dear community,
I've worked extensively with Sage on Debian, either source compiled or
installed from the repository. Last month I update my system to Debian
Bullseye, and since then I've been unable of using sage!
I'm attaching the automatically generated crash report.
I thank you in advance all possible help, since this is one of the programs
I use in my daily work.
--
_
Oscar Castillo-Felisola.
Grupo de Fisica Teorica.
UTFSM -- CCTVal.
Av. Espana, 1680, Valparaiso-Chile.
__
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***
IPython post-mortem report
{'commit_hash': u'64a584802',
'commit_source': 'installation',
'default_encoding': 'UTF-8',
'ipython_path': '/usr/local/lib/python2.7/dist-packages/IPython',
'ipython_version': '5.6.0',
'os_name': 'posix',
'platform': 'Linux-5.2.0-2-amd64-x86_64-with-debian-bullseye-sid',
'sys_executable': '/usr/bin/python2',
'sys_platform': 'linux2',
'sys_version': '2.7.16+ (default, Jul 8 2019, 09:45:29) \n[GCC 8.3.0]'}
***
***
Crash traceback:
---
---
ImportErrorPython 2.7.16+: /usr/bin/python2
Mon Sep 2 14:33:00 2019
A problem occurred executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
/usr/share/sagemath/bin/sage-ipython in ()
1 #!/usr/bin/env sage-python23
2 # -*- coding: utf-8 -*-
3 """
4 Sage IPython startup script.
5 """
6
7 # Display startup banner. Do this before anything else to give the user
8 # early feedback that Sage is starting.
9 from sage.misc.banner import banner
10 banner()
11
12 from sage.repl.interpreter import SageTerminalApp
13
14 app = SageTerminalApp.instance()
---> 15 app.initialize()
global app.initialize = >
16 app.start()
in initialize(self=, argv=None)
/usr/local/lib/python2.7/dist-packages/traitlets/config/application.pyc in
catch_config_error(method=,
app=, *args=(None,), **kwargs={})
72 TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False
73 else:
74 raise ValueError("Unsupported value for environment variable:
'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none of
{'0', '1', 'false', 'true', ''}."% _envvar )
75
76
77 @decorator
78 def catch_config_error(method, app, *args, **kwargs):
79 """Method decorator for catching invalid config
(Trait/ArgumentErrors) during init.
80
81 On a TraitError (generally caused by bad config), this will print
the trait's
82 message, and exit the app.
83
84 For use on init methods, to prevent invoking excepthook on invalid
input.
85 """
86 try:
---> 87 return method(app, *args, **kwargs)
method =
app =
args = (None,)
kwargs = {}
88 except (TraitError, ArgumentError) as e:
89 app.print_help()
90 app.log.fatal("Bad config encountered during initialization:")
91 app.log.fatal(str(e))
92 app.log.debug("Config at the time: %s", app.config)
93 app.exit(1)
94
95
96 class ApplicationError(Exception):
97 pass
98
99
100 class LevelFormatter(logging.Formatter):
101 """Formatter with additional `highlevel` record
102
/usr/local/lib/python2.7/dist-packages/IPython/terminal/ipapp.pyc in
initialize(self=, argv=None)
301
302 return super(TerminalIPythonApp, self).parse_command_line(argv)
303
304 @catch_config_error
305 def initialize(self, argv=None):
306 """Do actions after construct, but before starting the app."""
307 super(TerminalIPythonApp, self).initialize(argv)
308 if self.subapp is not None:
309 # don't bother initializing further, starting subapp
310 return
311 # print self.extra_args
312 if self.extra_args and not self.something_to_run:
313 self.file_to_run = self.extra_args[0]
314 self.init_path()
Re: [sage-support] Feature to constrain computation time?
On Mon, 2 Sep 2019, Szabolcs Horvát wrote: > Does Sage have a feature to constrain computation time? Suppose the function > f() takes a long time to run. I am looking for a way to run it *for at most > 5 minutes*. I think it has. But what if you just use timeout from command line? I.e. timeout $((5*60)) ./sage my_script.sage -- Jori Mäntysalo Tampereen yliopisto - Ihminen ratkaisee -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/alpine.DEB.2.21..1909022106080.83228%40shell.sis.uta.fi.
[sage-support] Re: Feature to constrain computation time?
Le lundi 2 septembre 2019 13:46:15 UTC+2, Szabolcs Horvát a écrit : > > Does Sage have a feature to constrain computation time? Suppose > the function f() takes a long time to run. I am looking for a way to > run it *for at most 5 minutes*. If it finishes by then, I'd like to have > the return value from f(). If not, it should communicate that clearly, > and the system should be ready for the next computation. > > For those familiar with Mathematica, I am looking for something > similar to its TimeConstrained[] command. > You could use `alarm`, see - Ask Sage question 7931 - Any way to timeout? https://ask.sagemath.org/question/7931 -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/bcc942bf-6621-4326-a37b-0cb1ce41547f%40googlegroups.com.
Re: [sage-support] SageMath for non-Debian/Ubuntu Linux?
Le lundi 2 septembre 2019 13:03:54 UTC+2, Szabolcs Horvát a écrit : > > Thanks to everyone for the responses. > SageMath packaging in Fedora is also in good shape. Distro-independent options include Conda and Nix. For more options see https://wiki.sagemath.org/Distribution I succeeded in installing from conda-forge. At the moment > they seem to have version 8.8 (the latest). > > The only small problem is that I accidentally ended up with > a Python 3 based installation. While the functions I need > appear to work correctly, my understanding is that Sage > still doesn't support Python 3. Thus I should probably > re-install with Python 2. Is this correct? > I use Python3-based SageMath for my daily work without problems. It should be at least 99% working. I would stick with Python 3 unless you detect that some specific things you need are not yet Python 3 ready in SageMath 8.8. Less than 100 doctests fail in Python 3 based SageMath 8.8, and it is down to a handful in 8.9.beta8. See these two tickets which track progress on making all tests pass: https://trac.sagemath.org/ticket/26212 https://trac.sagemath.org/ticket/28298 -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/d5cb0dc9-0884-434d-a9dd-e8e809b4a9f2%40googlegroups.com.
[sage-support] Feature to constrain computation time?
Does Sage have a feature to constrain computation time? Suppose the function f() takes a long time to run. I am looking for a way to run it *for at most 5 minutes*. If it finishes by then, I'd like to have the return value from f(). If not, it should communicate that clearly, and the system should be ready for the next computation. For those familiar with Mathematica, I am looking for something similar to its TimeConstrained[] command. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/b060e21d-aa2a-40ae-b421-37fa28ad6818%40googlegroups.com.
Re: [sage-support] Re: Tracking memory usage and time
On 19-09-02 10:35:18, Simon King wrote: > Hi J, > > On 2019-08-24, J wrote: > > to do a overview of a rather different set of `SAGE` methods, I would > > like to not only track the time used to run a command, but also the > > memory usage of the commands. > > > > Is there a recommended way to do this? > > I am a bit surprised that nobody answered this question yet. Sorry. > > There is the get_memory_usage command, that might provide what you asked > for. But I am not sure if I understand correctly what you want to > achieve: Do you have a lengthy program and you want to understand how > much resources each individual command in your program takes? In that > case, it might make sense to use a profiler (e.g., %prun or %crun). Or do > you only want to know how much time and memore the program takes in total? > In that case, %time and get_memory_usage would probably give you the > answer. > Thanks get_memory_usage sounds good; I want to run several decoders from the coding theory module to see better show there ups and downs; it is expected for the syndrome decoder to be quicker but more memory hungry while the nearest neighbor is more time expensive. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/20190902112113.qzcbu4shd2eirs37%40deathbolt.927589452.space.
Re: [sage-support] SageMath for non-Debian/Ubuntu Linux?
the support of Python 3 in Sage 8.8 is not quite complete (getting almost full in the upcoming 8.9), so it's indeed better to use Python 2 with it. Try adding the argument python=2.7 to the conda create ... command On Mon, Sep 2, 2019 at 2:03 PM Szabolcs Horvát wrote: > > Thanks to everyone for the responses. > > I succeeded in installing from conda-forge. At the moment they seem to have > version 8.8 (the latest). > > The only small problem is that I accidentally ended up with a Python 3 based > installation. While the functions I need appear to work correctly, my > understanding is that Sage still doesn't support Python 3. Thus I should > probably re-install with Python 2. Is this correct? > > On Monday, 2 September 2019 11:27:22 UTC+2, Dima Pasechnik wrote: >> >> you might try conda. >> (assuming it works on openSUSE, I don't know) >> >> On Mon, Sep 2, 2019 at 11:47 AM Szabolcs Horvát wrote: >> > >> > Are there pre-built binaries for other Linux varieties than Debian/Ubuntu, >> > or perhaps a "generic" variety that works on all common Linuxes? >> > >> > I am looking to install Sage into my home directory on an openSUSE system >> > where I do not have root access. Am I stuck with compiling from source? >> > >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-support" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-s...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-support/b21e517c-38dc-4d49-a343-8838cf3e493b%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/5c0e5b07-2d5c-4021-84c1-f7b874c563c6%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/CAAWYfq0kxnkVodumHCxtii_XVK%2BfeOKrWYgR48C7WPuetn41QA%40mail.gmail.com.
Re: [sage-support] SageMath for non-Debian/Ubuntu Linux?
Thanks to everyone for the responses. I succeeded in installing from conda-forge. At the moment they seem to have version 8.8 (the latest). The only small problem is that I accidentally ended up with a Python 3 based installation. While the functions I need appear to work correctly, my understanding is that Sage still doesn't support Python 3. Thus I should probably re-install with Python 2. Is this correct? On Monday, 2 September 2019 11:27:22 UTC+2, Dima Pasechnik wrote: > > you might try conda. > (assuming it works on openSUSE, I don't know) > > On Mon, Sep 2, 2019 at 11:47 AM Szabolcs Horvát > wrote: > > > > Are there pre-built binaries for other Linux varieties than > Debian/Ubuntu, or perhaps a "generic" variety that works on all common > Linuxes? > > > > I am looking to install Sage into my home directory on an openSUSE > system where I do not have root access. Am I stuck with compiling from > source? > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-support" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-s...@googlegroups.com . > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/b21e517c-38dc-4d49-a343-8838cf3e493b%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/5c0e5b07-2d5c-4021-84c1-f7b874c563c6%40googlegroups.com.
[sage-support] Re: Tracking memory usage and time
Hi J, On 2019-08-24, J wrote: > to do a overview of a rather different set of `SAGE` methods, I would > like to not only track the time used to run a command, but also the > memory usage of the commands. > > Is there a recommended way to do this? I am a bit surprised that nobody answered this question yet. Sorry. There is the get_memory_usage command, that might provide what you asked for. But I am not sure if I understand correctly what you want to achieve: Do you have a lengthy program and you want to understand how much resources each individual command in your program takes? In that case, it might make sense to use a profiler (e.g., %prun or %crun). Or do you only want to know how much time and memore the program takes in total? In that case, %time and get_memory_usage would probably give you the answer. Best regards, Simon -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/qkir96%245tgi%242%40blaine.gmane.org.
[sage-support] Re: SageMath for non-Debian/Ubuntu Linux?
Hi! On 2019-09-02, Szabolcs Horvát wrote: > Are there pre-built binaries for other Linux varieties than Debian/Ubuntu, > or perhaps a "generic" variety that works on all common Linuxes? > > I am looking to install Sage into my home directory on an openSUSE system > where I do not have root access. Am I stuck with compiling from source? I don't know if there are other pre-built binaries (I didn't look at the download pages). In any case, it is explained at http://doc.sagemath.org/html/en/installation/binary.html#linux how to install from a pre-built binary on Linux. However, provided that the prerequisites mentioned at http://doc.sagemath.org/html/en/installation/source.html#prerequisites are available, building from source shouldn't be much of a problem (I did use openSUSE till a couple of years ago). It just takes some time to compile. Note that you don't need root access. In fact, it is recommended AGAINST building Sage as root, which is also mentioned in the installation guide (i.e., the pointer above). Best regards, Simon -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/qkiqtc%245tgi%241%40blaine.gmane.org.
Re: [sage-support] SageMath for non-Debian/Ubuntu Linux?
you might try conda. (assuming it works on openSUSE, I don't know) On Mon, Sep 2, 2019 at 11:47 AM Szabolcs Horvát wrote: > > Are there pre-built binaries for other Linux varieties than Debian/Ubuntu, or > perhaps a "generic" variety that works on all common Linuxes? > > I am looking to install Sage into my home directory on an openSUSE system > where I do not have root access. Am I stuck with compiling from source? > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/b21e517c-38dc-4d49-a343-8838cf3e493b%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/CAAWYfq0EKUEsUFN%2BL0mUA6mRQy7E5dVGRd1GU4VTLwC5qDsfMA%40mail.gmail.com.
[sage-support] SageMath for non-Debian/Ubuntu Linux?
Are there pre-built binaries for other Linux varieties than Debian/Ubuntu, or perhaps a "generic" variety that works on all common Linuxes? I am looking to install Sage into my home directory on an openSUSE system where I do not have root access. Am I stuck with compiling from source? -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/b21e517c-38dc-4d49-a343-8838cf3e493b%40googlegroups.com.
