Re: [sage-support] Sage Crash Report
On Thu, Apr 23, 2020 at 9:42 PM Jean-Florent Raymond wrote: > > Hello, > > Did you try to rebuild since the upgrade? > If you upgraded a package that sage needs, then sage might complain that > it cannot find the version it was used to. > > It seems to be the case with libntl according to the crash report you > attached: > ImportError: libntl.so.35: cannot open shared object file: No such file > or directory indeed, this is to be expected - an OS update updates libraries your application is built against, and so it needs to be re-linked. > > > > Le 23/04/2020 à 15:10, Soufiane Lakhlifi a écrit : > > Hello, > > > > Here is the report of a crash that happened while trying to lunch sage: > > > > -Operating system: Ubuntu 20.04 beta, upgraded from 19.10. > > -Sage (8.9) was build from the source under Ubuntu 19.10 and by following > > the instructions in this page > > http://doc.sagemath.org/html/en/installation/source.html. > > No special flags were used except to change the build directory. > > -The crash happened by lunching sage (with no arguments) from the terminal, > > it is worth noting that the crash happened just after I upgraded my Ubuntu > > from > > 19.10 to 20.10. > > > > Best regards, > > Soufiane Lakhlifi. > > Zone contenant les pièces jointes > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/31ae06a6-0ace-d577-6d46-ce5e16ca7073%40uca.fr. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/CAAWYfq1tie20oSyrJXs3ddSzVfRE-UvaDg7TKWci8CX0ENL1Zg%40mail.gmail.com.
Re: [sage-support] Sage Crash Report
Hello, Did you try to rebuild since the upgrade? If you upgraded a package that sage needs, then sage might complain that it cannot find the version it was used to. It seems to be the case with libntl according to the crash report you attached: ImportError: libntl.so.35: cannot open shared object file: No such file or directory Le 23/04/2020 à 15:10, Soufiane Lakhlifi a écrit : > Hello, > > Here is the report of a crash that happened while trying to lunch sage: > > -Operating system: Ubuntu 20.04 beta, upgraded from 19.10. > -Sage (8.9) was build from the source under Ubuntu 19.10 and by following > the instructions in this page > http://doc.sagemath.org/html/en/installation/source.html. > No special flags were used except to change the build directory. > -The crash happened by lunching sage (with no arguments) from the terminal, > it is worth noting that the crash happened just after I upgraded my Ubuntu > from > 19.10 to 20.10. > > Best regards, > Soufiane Lakhlifi. > Zone contenant les pièces jointes > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/31ae06a6-0ace-d577-6d46-ce5e16ca7073%40uca.fr.
[sage-support] Sage Crash Report
Hello,
Here is the report of a crash that happened while trying to lunch sage:
-Operating system: Ubuntu 20.04 beta, upgraded from 19.10.
-Sage (8.9) was build from the source under Ubuntu 19.10 and by following
the instructions in this page
http://doc.sagemath.org/html/en/installation/source.html.
No special flags were used except to change the build directory.
-The crash happened by lunching sage (with no arguments) from the terminal,
it is worth noting that the crash happened just after I upgraded my Ubuntu
from
19.10 to 20.10.
Best regards,
Soufiane Lakhlifi.
Zone contenant les pièces jointes
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***
IPython post-mortem report
{'commit_hash': '033ab93c7',
'commit_source': 'installation',
'default_encoding': 'UTF-8',
'ipython_path':
'/home/soufiane/.SageMath/local/lib/python3.7/site-packages/IPython',
'ipython_version': '5.8.0',
'os_name': 'posix',
'platform': 'Linux-5.4.0-26-generic-x86_64-with-debian-bullseye-sid',
'sys_executable': '/home/soufiane/.SageMath/local/bin/python3',
'sys_platform': 'linux',
'sys_version': '3.7.3 (default, Oct 27 2019, 20:34:53) \n[GCC 9.2.1 20191008]'}
***
***
Crash traceback:
---
---
ImportErrorPython 3.7.3: /home/soufiane/.SageMath/local/bin/python3
Thu Apr 23 12:33:02 2020
A problem occurred executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
/home/soufiane/.SageMath/src/bin/sage-ipython in ()
1 #!/usr/bin/env sage-python23
2 # -*- coding: utf-8 -*-
3 """
4 Sage IPython startup script.
5 """
6
7 # Display startup banner. Do this before anything else to give the user
8 # early feedback that Sage is starting.
9 from sage.misc.banner import banner
10 banner()
11
12 from sage.repl.interpreter import SageTerminalApp
13
14 app = SageTerminalApp.instance()
---> 15 app.initialize()
global app.initialize = >
16 app.start()
in initialize(self=, argv=None)
/home/soufiane/.SageMath/local/lib/python3.7/site-packages/traitlets/config/application.py
in catch_config_error(method=,
app=, *args=(None,), **kwargs={})
72 TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False
73 else:
74 raise ValueError("Unsupported value for environment variable:
'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none of
{'0', '1', 'false', 'true', ''}."% _envvar )
75
76
77 @decorator
78 def catch_config_error(method, app, *args, **kwargs):
79 """Method decorator for catching invalid config
(Trait/ArgumentErrors) during init.
80
81 On a TraitError (generally caused by bad config), this will print
the trait's
82 message, and exit the app.
83
84 For use on init methods, to prevent invoking excepthook on invalid
input.
85 """
86 try:
---> 87 return method(app, *args, **kwargs)
method =
app =
args = (None,)
kwargs = {}
88 except (TraitError, ArgumentError) as e:
89 app.print_help()
90 app.log.fatal("Bad config encountered during initialization:")
91 app.log.fatal(str(e))
92 app.log.debug("Config at the time: %s", app.config)
93 app.exit(1)
94
95
96 class ApplicationError(Exception):
97 pass
98
99
100 class LevelFormatter(logging.Formatter):
101 """Formatter with additional `highlevel` record
102
/home/soufiane/.SageMath/local/lib/python3.7/site-packages/IPython/terminal/ipapp.py
in initialize(self=, argv=None)
301
302 return super(TerminalIPythonApp, self).parse_command_line(argv)
303
304 @catch_config_error
305 def initialize(self, argv=None):
306 """Do actions after construct, but before starting the app."""
307 super(TerminalIPythonApp, self).initialize(argv)
308 if self.subapp is not None:
309 # don't bother initializing further, starting subapp
310 return
311 # print self.extra_args
Re: [sage-support] building docs with sphinx-1.8.5 fails with existing _static
On Apr 23, Jean-Florent Raymond wrote:
Hello,
A workaround is to run "make" after "make doc-clean".
It worked for me.
Thanks! I should've checked sage-devel as well.
R.
Source:
https://groups.google.com/forum/?utm_medium=email_source=footer#!msg/sage-devel/RHMEHCTp_pU/12BWV897AgAJ
Related: https://github.com/sphinx-doc/sphinx/issues/7407
Best regards,
Jean-Florent.
Le 23/04/2020 à 13:20, 'Reimundo Heluani' via sage-support a écrit :
Hello, I posted this on ask.sagemath.org
https://ask.sagemath.org/question/50925/building-docs-with-sphinx-185/
On my own git branch, after the last pull I hit this error on "sage
--docbuild refernce html" even after a "make doc-clean".
This looks like what's described in this ticket
https://trac.sagemath.org/ticket/26451 but this is already applied in my
branch
The link _static on
local/share/doc/sage/html/en/reference/references/_static points to a
non-existing directory ../_static
After a "make doc-clean" it gets erased but it is recreated on the run
of "sage --docbuild"
This is $ uname -a
Linux rye 5.6.3-arch1-1 #1 SMP PREEMPT Wed, 08 Apr 2020 07:47:16 +
x86_64 GNU/Linux
on my own sage git which is very much up to date
sage: version()
'SageMath version 9.1.beta8, Release Date: 2020-03-18'
The log of the error is
# Sphinx version: 1.8.5
# Python version: 3.7.3 (CPython)
# Docutils version: 0.14 # Jinja2 version: 2.10
# Last messages:
# linking _static directory.
# copying extra files...
# done
# dumping search index in English (code: en) ...
# done
# dumping object inventory...
# done
# build succeeded, 1295 warnings.
# # The HTML pages are in
local/share/doc/sage/html/en/reference/references.
# Loaded extensions:
# sphinx.ext.mathjax (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/mathjax.py
# alabaster (0.7.12) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/alabaster/__init__.py
# inventory_builder (unknown version) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/inventory_builder.py
# multidocs (unknown version) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/multidocs.py
# sage_autodoc (1.8.5) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/sage_autodoc.py
# sphinx.ext.graphviz (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py
# sphinx.ext.inheritance_diagram (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/inheritance_diagram.py
# sphinx.ext.todo (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/todo.py
# sphinx.ext.extlinks (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/extlinks.py
# IPython.sphinxext.ipython_directive (unknown version) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/IPython/sphinxext/ipython_directive.py
# matplotlib.sphinxext.plot_directive (unknown version) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/matplotlib/sphinxext/plot_directive.py
Traceback (most recent call last):
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/cmd/build.py",
line 304, in build_main
app.build(args.force_all, filenames)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
line 369, in build
self.emit('build-finished', None)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
line 510, in emit
return self.events.emit(event, self, *args)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/events.py",
line 80, in emit
results.append(callback(*args))
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py",
line 414, in on_build_finished
copy_asset(src, dst)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/fileutil.py",
line 81, in copy_asset
ensuredir(destination)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/osutil.py",
line 90, in ensuredir
os.makedirs(path)
File "/home/user/Documents/code/sage/sage/local/lib/python3.7/os.py",
line 221, in makedirs
mkdir(name, mode)
FileExistsError: [Errno 17] File exists:
'/home/user/Documents/code/sage/sage/local/share/doc/sage/html/en/reference/references/_static'
I appreciate any help.
Thanks,
R.
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Re: [sage-support] building docs with sphinx-1.8.5 fails with existing _static
Hello,
A workaround is to run "make" after "make doc-clean".
It worked for me.
Source:
https://groups.google.com/forum/?utm_medium=email_source=footer#!msg/sage-devel/RHMEHCTp_pU/12BWV897AgAJ
Related: https://github.com/sphinx-doc/sphinx/issues/7407
Best regards,
Jean-Florent.
Le 23/04/2020 à 13:20, 'Reimundo Heluani' via sage-support a écrit :
>
> Hello, I posted this on ask.sagemath.org
>
> https://ask.sagemath.org/question/50925/building-docs-with-sphinx-185/
>
> On my own git branch, after the last pull I hit this error on "sage
> --docbuild refernce html" even after a "make doc-clean".
>
> This looks like what's described in this ticket
> https://trac.sagemath.org/ticket/26451 but this is already applied in my
> branch
>
> The link _static on
> local/share/doc/sage/html/en/reference/references/_static points to a
> non-existing directory ../_static
>
> After a "make doc-clean" it gets erased but it is recreated on the run
> of "sage --docbuild"
>
> This is $ uname -a
> Linux rye 5.6.3-arch1-1 #1 SMP PREEMPT Wed, 08 Apr 2020 07:47:16 +
> x86_64 GNU/Linux
>
> on my own sage git which is very much up to date
>
> sage: version()
> 'SageMath version 9.1.beta8, Release Date: 2020-03-18'
>
> The log of the error is
>
> # Sphinx version: 1.8.5
> # Python version: 3.7.3 (CPython)
> # Docutils version: 0.14 # Jinja2 version: 2.10
> # Last messages:
> # linking _static directory.
> # copying extra files...
> # done
> # dumping search index in English (code: en) ...
> # done
> # dumping object inventory...
> # done
> # build succeeded, 1295 warnings.
> # # The HTML pages are in
> local/share/doc/sage/html/en/reference/references.
> # Loaded extensions:
> # sphinx.ext.mathjax (1.8.5) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/mathjax.py
>
> # alabaster (0.7.12) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/alabaster/__init__.py
>
> # inventory_builder (unknown version) from
> /home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/inventory_builder.py
>
> # multidocs (unknown version) from
> /home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/multidocs.py
>
> # sage_autodoc (1.8.5) from
> /home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/sage_autodoc.py
>
> # sphinx.ext.graphviz (1.8.5) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py
>
> # sphinx.ext.inheritance_diagram (1.8.5) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/inheritance_diagram.py
>
> # sphinx.ext.todo (1.8.5) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/todo.py
>
> # sphinx.ext.extlinks (1.8.5) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/extlinks.py
>
> # IPython.sphinxext.ipython_directive (unknown version) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/IPython/sphinxext/ipython_directive.py
>
> # matplotlib.sphinxext.plot_directive (unknown version) from
> /home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/matplotlib/sphinxext/plot_directive.py
>
> Traceback (most recent call last):
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/cmd/build.py",
> line 304, in build_main
> app.build(args.force_all, filenames)
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
> line 369, in build
> self.emit('build-finished', None)
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
> line 510, in emit
> return self.events.emit(event, self, *args)
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/events.py",
> line 80, in emit
> results.append(callback(*args))
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py",
> line 414, in on_build_finished
> copy_asset(src, dst)
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/fileutil.py",
> line 81, in copy_asset
> ensuredir(destination)
> File
> "/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/osutil.py",
> line 90, in ensuredir
> os.makedirs(path)
> File "/home/user/Documents/code/sage/sage/local/lib/python3.7/os.py",
> line 221, in makedirs
> mkdir(name, mode)
> FileExistsError: [Errno 17] File exists:
> '/home/user/Documents/code/sage/sage/local/share/doc/sage/html/en/reference/references/_static'
>
>
>
> I appreciate any help.
>
> Thanks,
>
> R.
>
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[sage-support] building docs with sphinx-1.8.5 fails with existing _static
Hello, I posted this on ask.sagemath.org
https://ask.sagemath.org/question/50925/building-docs-with-sphinx-185/
On my own git branch, after the last pull I hit this error on "sage --docbuild refernce
html" even after a "make doc-clean".
This looks like what's described in this ticket
https://trac.sagemath.org/ticket/26451 but this is already applied in my branch
The link _static on local/share/doc/sage/html/en/reference/references/_static
points to a non-existing directory ../_static
After a "make doc-clean" it gets erased but it is recreated on the run of "sage
--docbuild"
This is $ uname -a
Linux rye 5.6.3-arch1-1 #1 SMP PREEMPT Wed, 08 Apr 2020 07:47:16 + x86_64
GNU/Linux
on my own sage git which is very much up to date
sage: version()
'SageMath version 9.1.beta8, Release Date: 2020-03-18'
The log of the error is
# Sphinx version: 1.8.5
# Python version: 3.7.3 (CPython)
# Docutils version: 0.14 # Jinja2 version: 2.10
# Last messages:
# linking _static directory.
# copying extra files...
# done
# dumping search index in English (code: en) ...
# done
# dumping object inventory...
# done
# build succeeded, 1295 warnings.
# # The HTML pages are in
local/share/doc/sage/html/en/reference/references.
# Loaded extensions:
# sphinx.ext.mathjax (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/mathjax.py
# alabaster (0.7.12) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/alabaster/__init__.py
# inventory_builder (unknown version) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/inventory_builder.py
# multidocs (unknown version) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/multidocs.py
# sage_autodoc (1.8.5) from
/home/user/Documents/code/sage/sage/src/sage_setup/docbuild/ext/sage_autodoc.py
# sphinx.ext.graphviz (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py
# sphinx.ext.inheritance_diagram (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/inheritance_diagram.py
# sphinx.ext.todo (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/todo.py
# sphinx.ext.extlinks (1.8.5) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/extlinks.py
# IPython.sphinxext.ipython_directive (unknown version) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/IPython/sphinxext/ipython_directive.py
# matplotlib.sphinxext.plot_directive (unknown version) from
/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/matplotlib/sphinxext/plot_directive.py
Traceback (most recent call last):
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/cmd/build.py",
line 304, in build_main
app.build(args.force_all, filenames)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
line 369, in build
self.emit('build-finished', None)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/application.py",
line 510, in emit
return self.events.emit(event, self, *args)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/events.py",
line 80, in emit
results.append(callback(*args))
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/ext/graphviz.py",
line 414, in on_build_finished
copy_asset(src, dst)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/fileutil.py",
line 81, in copy_asset
ensuredir(destination)
File
"/home/user/Documents/code/sage/sage/local/lib/python3.7/site-packages/sphinx/util/osutil.py",
line 90, in ensuredir
os.makedirs(path)
File "/home/user/Documents/code/sage/sage/local/lib/python3.7/os.py", line
221, in makedirs
mkdir(name, mode)
FileExistsError: [Errno 17] File exists:
'/home/user/Documents/code/sage/sage/local/share/doc/sage/html/en/reference/references/_static'
I appreciate any help.
Thanks,
R.
--
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