Re: [sage-support] Re: scipy fails to build in sage 10.2.beta4 on fedora 38

2023-09-25 Thread Dima Pasechnik
On Mon, Sep 25, 2023 at 10:42 PM Eric Majzoub  wrote:
>
>
> I have the python package mesonpy installed...
> Perhaps I'm not setting my python path appropriately, but
> PYTHONPATH=/usr/lib/python3.11/site-packages
> points right to it.

To use it, you see to run ./configure with --enable-system-site-packages flag.

Otherwise no system Python packages are used. This is a new feature,
not tested very well yet.




> On Monday, September 25, 2023 at 4:30:11 PM UTC-5 Eric Majzoub wrote:
>>
>> Fresh clone of git repository of sage. I issued:
>>
>> cd sage
>> ./bootstrap
>> ./configure --no-create --no-recursion
>> make
>>
>> I've attached the log file for the scipy fail.
>>
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[sage-support] Re: scipy fails to build in sage 10.2.beta4 on fedora 38

2023-09-25 Thread Eric Majzoub

I have the python package mesonpy installed... 
Perhaps I'm not setting my python path appropriately, but
PYTHONPATH=/usr/lib/python3.11/site-packages
points right to it.
On Monday, September 25, 2023 at 4:30:11 PM UTC-5 Eric Majzoub wrote:

> Fresh clone of git repository of sage. I issued:
>
> cd sage 
> ./bootstrap 
> ./configure --no-create --no-recursion 
> make 
>
> I've attached the log file for the scipy fail.
>
>

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[sage-support] Re: Contributing to SageMath

2023-09-25 Thread Dima Pasechnik
Why are you posting the same question 
(https://groups.google.com/g/sage-devel/c/lIvGAAY_zEo/m/ChF0AN4aBwAJ)
here? It was answered in this thread: 
https://groups.google.com/g/sage-devel/c/lIvGAAY_zEo/m/ChF0AN4aBwAJ

On Monday, September 25, 2023 at 10:30:11 PM UTC+1 Saatvik Rao wrote:

> Hello developers,
>
> I am currently doing a project course that involves making active 
> contributions to the SageMath library (specifically in the area of graphs). 
> For the successful completion of the project, it is important to get my 
> work merged/pushed/accepted. 
>
> Currently, I have implemented an *induced minor* function in graphs. 
> Could someone guide me on how to contribute to SageMath? I am trying to 
> push my changes, but it shows *Permission to sagemath/sage.git denied to *
> user. 
>
>
>

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Re: [sage-support] scipy fails to build in sage 10.2.beta4 on fedora 38

2023-09-25 Thread Dima Pasechnik
On Mon, Sep 25, 2023 at 10:30 PM Eric Majzoub  wrote:
>
> Fresh clone of git repository of sage. I issued:
>
> cd sage
> ./bootstrap
> ./configure --no-create --no-recursion
> make
>
> I've attached the log file for the scipy fail.

this is a known bug. Fixed in https://github.com/sagemath/sage/pull/36276

>
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[sage-support] scipy fails to build in sage 10.2.beta4 on fedora 38

2023-09-25 Thread Eric Majzoub
Fresh clone of git repository of sage. I issued:

cd sage 
./bootstrap 
./configure --no-create --no-recursion 
make 

I've attached the log file for the scipy fail.

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Attempting to download package scipy-1.11.2.tar.gz from mirrors
https://mirrors.mit.edu/sage/spkg/upstream/scipy/scipy-1.11.2.tar.gz
[..]
scipy-1.11.2

Setting up build directory for scipy-1.11.2
Finished extraction
Applying patches from ../patches...
Applying ../patches/numpy-include.patch
patching file scipy/spatial/setup.py
Hunk #1 succeeded at 39 (offset -1 lines).
Applying ../patches/tests_no_internet_dependency.patch
patching file scipy/datasets/meson.build

Host system:
Linux fedora 6.4.15-200.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Sep  7 00:25:01 UTC 2023 x86_64 GNU/Linux

C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/13/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-13.2.1-20230728/obj-x86_64-redhat-linux/isl-install --enable-offload-targets=nvptx-none --without-cuda-driver --enable-offload-defaulted --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.1 20230728 (Red Hat 13.2.1-1) (GCC) 

Package 'scipy' is currently not installed
No legacy uninstaller found for 'scipy'; nothing to do
Installing scipy-1.11.2
DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
Processing /home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/var/tmp/sage/build/scipy-1.11.2/src
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  Preparing metadata (pyproject.toml): finished with status 'done'
ERROR: Exception:
Traceback (most recent call last):
  File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
status = run_func(*args)
 ^^^
  File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
return func(self, options, args)
   ^
  File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/commands/wheel.py", line 170, in run
requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
  ^^^
  File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 73, in resolve
collected = self.factory.collect_root_requirements(root_reqs)
^
  File "/home/packages/SOURCE/sage/local/var/lib/sage/venv-python3.11/lib64/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 491, in collect_root_requirements
req = self._make_requirement_from_install_req(
  
  File 

[sage-support] Contributing to SageMath

2023-09-25 Thread Saatvik Rao
Hello developers,

I am currently doing a project course that involves making active 
contributions to the SageMath library (specifically in the area of graphs). 
For the successful completion of the project, it is important to get my 
work merged/pushed/accepted. 

Currently, I have implemented an *induced minor* function in graphs. Could 
someone guide me on how to contribute to SageMath? I am trying to push my 
changes, but it shows *Permission to sagemath/sage.git denied to *user. 


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