[sage-support] Re: Jupiter Server fails to start on macOS Catalina

2020-01-06 Thread Ralph Martin
I confirm that Jupyter does not start. My log shows the following output

[I 18:14:07.652 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
[I 18:14:07.842 NotebookApp] Serving notebooks from local directory: 
/Users/ralph/Documents/Sage Jupyter Notebooks
[I 18:14:07.842 NotebookApp] The Jupyter Notebook is running at:
[I 18:14:07.843 NotebookApp] 
http://localhost:/?token=1c3d72103aad6145315688067632cb508eed65dc7b3ff57a
[I 18:14:07.843 NotebookApp] Use Control-C to stop this server and shut 
down all kernels (twice to skip confirmation).
[C 18:14:07.847 NotebookApp] 

To access the notebook, open this file in a browser:
file:///Users/ralph/Library/Jupyter/runtime/nbserver-11902-open.html
Or copy and paste one of these URLs:

http://localhost:/?token=1c3d72103aad6145315688067632cb508eed65dc7b3ff57a
[I 18:14:24.013 NotebookApp] Creating new notebook in 
[I 18:14:24.692 NotebookApp] Kernel started: 
35543d18-9b4d-44d6-9234-fde888a4951e
[I 18:14:26.123 NotebookApp] Adapting to protocol v5.1 for kernel 
35543d18-9b4d-44d6-9234-fde888a4951e
[I 18:15:11.689 NotebookApp] Saving file at /Untitled.ipynb
[I 18:15:48.066 NotebookApp] Starting buffering for 
35543d18-9b4d-44d6-9234-fde888a4951e:08c6751af6b3477893d056fe2cc9c4c7
[I 18:15:48.379 NotebookApp] Kernel shutdown: 
35543d18-9b4d-44d6-9234-fde888a4951e
shell-init: error retrieving current directory: getcwd: cannot access 
parent directories: Operation not permitted
shell-init: error retrieving current directory: getcwd: cannot access 
parent directories: Operation not permitted
shell-init: error retrieving current directory: getcwd: cannot access 
parent directories: Operation not permitted
shell-init: error retrieving current directory: getcwd: cannot access 
parent directories: Operation not permitted
shell-init: error retrieving current directory: getcwd: cannot access 
parent directories: Operation not permitted

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[sage-support] Re: Jupiter Server fails to start on macOS Catalina

2020-01-06 Thread Ralph Martin

>
> I also gave Sage Full Disk Access (in Security -> Privacy preference 
> pane), as well as using xattr, as it seemed unable to access certain 
> directories.
>
 

> Sage now does start Jupyter.
>
 

>
>
On Monday, 6 January 2020 15:07:35 UTC, Murray Eisenberg wrote:
>
> I separately reported the same behavior -- the Jupyter server not starting 
> with SageMath-9.0 -- and so tried the suggestion of 
>
> APP=/Applications/SageMath-9.0.app 
>
> xattr -dr com.apple.quarantine $APP
>
>
> reportedthe latter both as shown and with "sudo". 
>
>
> This does *not* fix the problem!
>
> On Monday, January 6, 2020 at 5:04:35 AM UTC-5, Eric Martin wrote:
>>
>> After installing sage-9.0-OSX_10.15.2-x86_64.app.dmg, doubling clicking 
>> the Sage icon immediately results in a window popping up with the message: 
>> "Jupiter Server fails to start. For some reason the Jupiter server ailed to 
>> start. Please check the log for clues, and have that information handy when 
>> asking for help." The log shows:
>>
>> Rewriting paths for your new installation directory
>> ===
>>
>> This might take a few minutes but only has to be done once.
>>
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/build/make/Makefile-auto
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/config.status
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/2to3-3.7
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/ESingular
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/NRswitchg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/QuadraticSieve
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/R
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/Rscript
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/Singular
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/TSingular
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/addedgeg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/adjacency
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/adjacency_gmp
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/allfaces
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/allfaces_gmp
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/amtog
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/annotate
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/biplabg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cas_help
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/catg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cddexec
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cddexec_gmp
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cl
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/complg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/converseg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/copyg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/countg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cu2
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cubex
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cubhamg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/curve_keygen
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cygdb
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cysignals-CSI
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cython
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/cythonize
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/deledgeg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/delptg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/directg
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/dreadnaut
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/dretodot
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/dretog
>> patching 
>> /Applications/SageMath-9.0.app/Contents/Resources/sage/local/bin/easy_install
>> patching 
>> /Applications/SageMath-9