[sage-support] Re: recent woes with relocation of SageMath installation directory
A fixed version (you can run sagemath-upstream-binary without the -full) is
now busy copying from the dev PPA to the stable PPA.
7.0~aimsppa1~qa201602060140061
Regards,
Jan
On 3 February 2016 at 17:46, Jan Groenewald wrote:
> Hi
>
> TL;DR install sagemath-upstream-binary-full for a fix. The error in 6.9 is
> harmless as only one unimportant file is missing.
>
>
>
> The development PPA now has a working sagemath-upstream-binary-full 7.0
> with no error at all.
> https://launchpad.net/~aims/+archive/ubuntu/sagemath-dev
> When it runs the relocate-once.py after install, it takes (quite) a while
> to patch and then prints message:
>
> ...
> patching
> /usr/lib/sagemath/local/lib/python2.7/site-packages/sage/ext/pselect.so
> patching /usr/lib/sagemath/local/lib/libstdc++.so.6.0.20
> * AIMS PPA: relocate-once.py finished running. Ignore above Exception
> ┌┐
> │ SageMath Version 7.0, Release Date: 2016-01-19 │
> │ Type "notebook()" for the browser-based notebook interface.│
> │ Type "help()" for help.│
> └┘
> sage: Exiting Sage (CPU time 0m0.02s, Wall time 0m0.10s).
> Setting up sagemath-upstream-binary-full (7.0~aimsppa1~qa201602031255151)
> ...
> 0 root@muizenberg:~#
>
> Even though there is no exception; I added that warning before putting
> this out. This is because I added one missing file to
> sagemath-binary-upstream ($SAGE_ROOT/builId/make/Makefile). This version
> will be uploaded to the stable PPA in a week or two depending on feedback.
>
> The smaller bandwidth-saving and disk-saving sagemath-upstream-binary 7.0
> (no -full in the name) is also there (basically excluding most of the
> $SAGE_ROOT/src folder), but will still give the error:
>
> OSError: [Errno 2] No such file or directory:
> '/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c'
>
> After that the debian/postinst will then try to run sage once, then stop,
> as not nearly enough paths were patched. Even removing relocate-once.py is
> not enough:
>
> ┌┐
> │ SageMath Version 7.0, Release Date: 2016-01-19 │
> │ Type "notebook()" for the browser-based notebook interface.│
> │ Type "help()" for help.│
> └┘
>
> ERROR: The Sage installation tree has moved
>
> from
> /mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma
> to /usr/lib/sagemath
>
> This is not supported, and Sage will not work. To install Sage from a
> binary package:
>
> 1. Open the .tar.bz2 archive (or .dmg on OSX)
>
> 2. Move the SageMath folder/app to where you want it to be. You can
>also rename the directory now.
>
> 3. Start sage for the first time. This will then automatically patch
>paths in binaries.
>
> After starting Sage for the first time you cannot change the
> installation any more. To install Sage elsewhere, start over from the
> binary package. Or recompile Sage from scratch in the new location
> ("make distclean && make")
>
> dpkg: error processing package sagemath-upstream-binary (--configure):
> subprocess installed post-installation script returned error exit status 1
> Errors were encountered while processing:
> sagemath-upstream-binary
> E: Sub-process /usr/bin/dpkg returned an error code (1)
> root@alice-laptop:~#
> root@alice-laptop:~# ls /usr/lib/sagemath/
> COPYING.txt README.txt VERSION.txt build local relocate-once.py
> sage src
> root@alice-laptop:~# rm /usr/lib/sagemath/relocate-once.py
> root@alice-laptop:~# sage
> ┌┐
> │ SageMath Version 7.0, Release Date: 2016-01-19 │
> │ Type "notebook()" for the browser-based notebook interface.│
> │ Type "help()" for help.│
> └┘
>
> ERROR: The Sage installation tree has moved
>
> from
> /mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma
> to /usr/lib/sagemath
>
> This is not supported, and Sage will not work. To install Sage from a
> binary package:
>
> 1. Open the .tar.bz2 archive (or .dmg on OSX)
>
> 2. Move the SageMath folder/app to where you want it to be. You can
>also rename the directory now.
>
> 3. Start sage for the first time. This will then automatically patch
>paths in binaries.
>
> After starting Sage for the first time you cannot change the
> installation any more. To install Sage elsewhere, start over from the
> binary package. Or recompile Sage from scratch in the new location
> ("make distclean && make")
>
> root@alice-laptop:~# apt-get i
[sage-support] Re: recent woes with relocation of SageMath installation directory
Following the ppa sage link, I tried to install sage-7, it works fine. Time
for patching, but no problem.
I use two version of sagemath the ppa and developer one (which I compile)
and after I compile sagemanifolds (which I can't do at the moment with the
ppa because it's installed system-wide).
Thanks for this good work
Henri
Le mardi 2 février 2016 18:16:12 UTC+1, slelievre a écrit :
>
> Dear sage-support (cc: sage-release, sage-devel)
> (please reply on sage-support only)
>
> I received the following question after announcing
> Sage 7.0 on sage-announce.
>
> This is one of many such questions I am reading on
> various lists and sites recently.
>
> Something needs to be more clearly documented,
> or refactored.
>
> Can someone answer this question by replying to
> this post on sage-support?
>
> Thanks!
> Samuel
>
> -- Forwarded message --
> Date: Mon, 1 Feb 2016 23:32:31 -0600
> To: Samuel Lelievre >
> Subject: Installing upgraded SageMath
>
> I tried installing sagemath-upstream-binary on my Ubuntu Trusty Tahr
> system and saw this:
>
> Rewriting paths for your new installation directory
> ===
>
> This might take a few minutes but only has to be done once.
>
> patching
> /usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c
> Traceback (most recent call last):
> File "/usr/lib/sagemath/relocate-once.py", line 85, in
>
> p('src/build/cythonized/sage/structure/list_clone.c').substitute().save()
> File "/usr/lib/sagemath/relocate-once.py", line 70, in __call__
> return FilePatch(self, filename)
> File "/usr/lib/sagemath/relocate-once.py", line 21, in __init__
> self.st = os.stat(filename)
> OSError: [Errno 2] No such file or directory:
> '/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c'
>
> Any idea what is up?
>
> Dale Amon
>
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[sage-support] Re: recent woes with relocation of SageMath installation directory
Hi
TL;DR install sagemath-upstream-binary-full for a fix. The error in 6.9 is
harmless as only one unimportant file is missing.
The development PPA now has a working sagemath-upstream-binary-full 7.0
with no error at all.
https://launchpad.net/~aims/+archive/ubuntu/sagemath-dev
When it runs the relocate-once.py after install, it takes (quite) a while
to patch and then prints message:
...
patching
/usr/lib/sagemath/local/lib/python2.7/site-packages/sage/ext/pselect.so
patching /usr/lib/sagemath/local/lib/libstdc++.so.6.0.20
* AIMS PPA: relocate-once.py finished running. Ignore above Exception
┌┐
│ SageMath Version 7.0, Release Date: 2016-01-19 │
│ Type "notebook()" for the browser-based notebook interface.│
│ Type "help()" for help.│
└┘
sage: Exiting Sage (CPU time 0m0.02s, Wall time 0m0.10s).
Setting up sagemath-upstream-binary-full (7.0~aimsppa1~qa201602031255151)
...
0 root@muizenberg:~#
Even though there is no exception; I added that warning before putting this
out. This is because I added one missing file to sagemath-binary-upstream
($SAGE_ROOT/builId/make/Makefile). This version will be uploaded to the
stable PPA in a week or two depending on feedback.
The smaller bandwidth-saving and disk-saving sagemath-upstream-binary 7.0
(no -full in the name) is also there (basically excluding most of the
$SAGE_ROOT/src folder), but will still give the error:
OSError: [Errno 2] No such file or directory:
'/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c'
After that the debian/postinst will then try to run sage once, then stop,
as not nearly enough paths were patched. Even removing relocate-once.py is
not enough:
┌┐
│ SageMath Version 7.0, Release Date: 2016-01-19 │
│ Type "notebook()" for the browser-based notebook interface.│
│ Type "help()" for help.│
└┘
ERROR: The Sage installation tree has moved
from
/mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma
to /usr/lib/sagemath
This is not supported, and Sage will not work. To install Sage from a
binary package:
1. Open the .tar.bz2 archive (or .dmg on OSX)
2. Move the SageMath folder/app to where you want it to be. You can
also rename the directory now.
3. Start sage for the first time. This will then automatically patch
paths in binaries.
After starting Sage for the first time you cannot change the
installation any more. To install Sage elsewhere, start over from the
binary package. Or recompile Sage from scratch in the new location
("make distclean && make")
dpkg: error processing package sagemath-upstream-binary (--configure):
subprocess installed post-installation script returned error exit status 1
Errors were encountered while processing:
sagemath-upstream-binary
E: Sub-process /usr/bin/dpkg returned an error code (1)
root@alice-laptop:~#
root@alice-laptop:~# ls /usr/lib/sagemath/
COPYING.txt README.txt VERSION.txt build local relocate-once.py sage
src
root@alice-laptop:~# rm /usr/lib/sagemath/relocate-once.py
root@alice-laptop:~# sage
┌┐
│ SageMath Version 7.0, Release Date: 2016-01-19 │
│ Type "notebook()" for the browser-based notebook interface.│
│ Type "help()" for help.│
└┘
ERROR: The Sage installation tree has moved
from
/mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma
to /usr/lib/sagemath
This is not supported, and Sage will not work. To install Sage from a
binary package:
1. Open the .tar.bz2 archive (or .dmg on OSX)
2. Move the SageMath folder/app to where you want it to be. You can
also rename the directory now.
3. Start sage for the first time. This will then automatically patch
paths in binaries.
After starting Sage for the first time you cannot change the
installation any more. To install Sage elsewhere, start over from the
binary package. Or recompile Sage from scratch in the new location
("make distclean && make")
root@alice-laptop:~# apt-get install sagemath-upstream-binary-full
The workaround is to install sagemath-upstream-binary-full (and in 6.9 to
ignore the error).
It is possible to install the 7.0 now from the dev PPA and then to disable
it:
sudo apt-add-repository -y ppa:aims/sagemath-dev
sudo apt-get update
sudo apt-get install sagemath-upstream-binary-full
sudo mv /etc/apt/sources.list.d/aims-sagemath-dev-trusty.list{,.disabled}
Notes:
The plan is
Re: [sage-support] Re: recent woes with relocation of SageMath installation directory
I installed binary from sagemath web site 64 ubuntu 15.10 on xenial it
works fine. I couldn't get ppa aims working.
Le 02/02/2016 21:50, Volker Braun a écrit :
Is this the Ubuntu PPA? I think thats not working right now. Whoever
is maintaining it (Jan?) should probably revert it until its fixed.
On Tuesday, February 2, 2016 at 6:16:08 PM UTC+1, Samuel Lelievre wrote:
Dear sage-support (cc: sage-release, sage-devel)
(please reply on sage-support only)
I received the following question after announcing
Sage 7.0 on sage-announce.
This is one of many such questions I am reading on
various lists and sites recently.
Something needs to be more clearly documented,
or refactored.
Can someone answer this question by replying to
this post on sage-support?
Thanks!
Samuel
-- Forwarded message --
Date: Mon, 1 Feb 2016 23:32:31 -0600
To: Samuel Lelievre >
Subject: Installing upgraded SageMath
I tried installing sagemath-upstream-binary on my Ubuntu Trusty Tahr
system and saw this:
Rewriting paths for your new installation directory
===
This might take a few minutes but only has to be done once.
patching
/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c
Traceback (most recent call last):
File "/usr/lib/sagemath/relocate-once.py", line 85, in
p('src/build/cythonized/sage/structure/list_clone.c').substitute().save()
File "/usr/lib/sagemath/relocate-once.py", line 70, in __call__
return FilePatch(self, filename)
File "/usr/lib/sagemath/relocate-once.py", line 21, in __init__
self.st = os.stat(filename)
OSError: [Errno 2] No such file or directory:
'/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c'
Any idea what is up?
Dale Amon
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[sage-support] Re: recent woes with relocation of SageMath installation directory
Is this the Ubuntu PPA? I think thats not working right now. Whoever is
maintaining it (Jan?) should probably revert it until its fixed.
On Tuesday, February 2, 2016 at 6:16:08 PM UTC+1, Samuel Lelievre wrote:
>
> Dear sage-support (cc: sage-release, sage-devel)
> (please reply on sage-support only)
>
> I received the following question after announcing
> Sage 7.0 on sage-announce.
>
> This is one of many such questions I am reading on
> various lists and sites recently.
>
> Something needs to be more clearly documented,
> or refactored.
>
> Can someone answer this question by replying to
> this post on sage-support?
>
> Thanks!
> Samuel
>
> -- Forwarded message --
> Date: Mon, 1 Feb 2016 23:32:31 -0600
> To: Samuel Lelievre >
> Subject: Installing upgraded SageMath
>
> I tried installing sagemath-upstream-binary on my Ubuntu Trusty Tahr
> system and saw this:
>
> Rewriting paths for your new installation directory
> ===
>
> This might take a few minutes but only has to be done once.
>
> patching
> /usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c
> Traceback (most recent call last):
> File "/usr/lib/sagemath/relocate-once.py", line 85, in
>
> p('src/build/cythonized/sage/structure/list_clone.c').substitute().save()
> File "/usr/lib/sagemath/relocate-once.py", line 70, in __call__
> return FilePatch(self, filename)
> File "/usr/lib/sagemath/relocate-once.py", line 21, in __init__
> self.st = os.stat(filename)
> OSError: [Errno 2] No such file or directory:
> '/usr/lib/sagemath/src/build/cythonized/sage/structure/list_clone.c'
>
> Any idea what is up?
>
> Dale Amon
>
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