On Tue, Nov 15, 2016 at 4:17 PM, William Hay <w....@ucl.ac.uk> wrote:
> On Tue, Nov 15, 2016 at 10:44:01AM +0530, Himanshu Joshi wrote: > > On Mon, Nov 14, 2016 at 8:41 PM, William Hay <w....@ucl.ac.uk> wrote: > > > > On Mon, Nov 14, 2016 at 06:03:43PM +0530, Himanshu Joshi wrote: > > > Thanks William > > > On Fri, Nov 11, 2016 at 10:31 PM, William Hay <w....@ucl.ac.uk > > > > wrote: > > > > > > On Thu, Nov 10, 2016 at 02:26:35PM +0530, Himanshu Joshi > wrote: > > > > I suspect you probably want to use inst_sge to > configure > > the node > > > as an > > > > execd as well. > > > > > > > > Is there any documentation available for doing that > because > > I do > > > not have > > > > any idea how to do it > > > http://arc.liv.ac.uk/SGE/howto/commontasks.html > > > If you are just making the initial qmaster into an execution > host > > as > > > well > > > then changing to $SGE_ROOT and running ./install_execd > should do > > it. > > > > > > > > > It worked, Now Execution daemon installed successfully. But I > am > > not sure > > > whether the nodes are configured or not... > > > > > > Make sure you have SGE_ROOT set correctly first (see below) > > > > > > > And I tried some computations with the current setup but > > some of > > > the > > > > errors were > > > > > > > > Error: which: no qconf in (/usr/local...... .... ) > > > > Warning SGE_ROOT environment variable is set but Grid > Engine > > > software is > > > > not found, will run locally > > > If you installed Dave's packages then they install into > /opt/sge > > by > > > default so set the > > > SGE_ROOT environment variable to point to that. > > > > > > sourcing /opt/sge/default/common/seetings.sh should set up > the > > > enironment. > > > changes done in .bashrc file as suggested > > > > > > > > And there is no folder gridengine in usr/share/doc > > > > Thus it indicates the software is not at all installed > > > Dave's packages are designed to be installed under /opt and > don't > > > stick things into /usr/share/doc. > > > > > > William > > > > > > Please find below the outputs of few of the configuration > commands > > > (without using sudo) in my terminal > > > > > > "qconf -sh" shows > > > mbialjpj > > > > > > "qconf -sel" shows > > > no execution host defined > > > > > > "qconf -ae" shows > > > denied: "JPJ" must be manager for this operation" > > iRunning qconf -ae as root so you can add a host should do it. > > > > If I understand this one liner correctly, you mean to say the qconf > -ae > > newhost can add "newhost". But as a root using this command says > qconf: > > Command not found. > As root: > source /opt/sge/default/common/settings.sh > qconf -ae > Thanks,Please find the outputs and advise [root@mbialjpj ~]# source /opt/sge/default/common/settings.sh SGE_ROOT=/opt/sge: Command not found. export: Command not found. SGE_ROOT: Undefined variable. [root@mbialjpj ~]# qconf -ae qconf: Command not found. [root@mbialjpj ~]# $SGE_ROOT SGE_ROOT: Undefined variable. [root@mbialjpj ~]# which $SGE_ROOT SGE_ROOT: Undefined variable. and without sudo -i..the outputs are like this [JPJ@mbialjpj ~]$ $SGE_ROOT bash: /opt/sge: Is a directory [JPJ@mbialjpj ~]$ which $SGE_ROOT /usr/bin/which: no sge in (/opt [JPJ@mbialjpj ~]$ qconf -ae denied: "JPJ" must be manager for this operation [JPJ@mbialjpj ~]$ qconf -ae newhost denied: "JPJ" must be manager for this operation Regards > > > > > > > William > > > > Kindly suggest the needful > > -- > > Himanshu Joshi > > M.Tech. Cognitive & Neuroscience. > > Ph.D Scholar, > > Department of Psychiatry > > NIMHANS, Bangalore > > Publications > > Multimodal Brain Image Analysis Laboratory > Kindly advise the needful -- Himanshu Joshi
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