Re: [spctools-discuss] New to TPP: finding FDR corresponding to probability

['David Shteynberg' via spctools-discuss]

Hello and welcome!

You are correct!  That is the model-estimated error/sensitivity table for
ProteinProphet, in this case.  A table of this sort is generated for
PeptideProphet model estimates, iProphet based model estimates or
ProteinProphet model estimates depending on the file being considered.

Cheers,
-David



On Mon, Jul 27, 2020 at 9:41 AM RS  wrote:

> I'm new to TPP and trying to find the the probabilty  correspnding to the
> Target FDR of 1%
>
> Do I need to find it out from the following table? The probability
> corresponds 0.74 corresponds to 1% FDR?
>
>
> ProteinProphet Table 
>
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[spctools-discuss] New to TPP: finding FDR corresponding to probability

[RS]

I'm new to TPP and trying to find the the probabilty  correspnding to the 
Target FDR of 1%

Do I need to find it out from the following table? The probability 
corresponds 0.74 corresponds to 1% FDR?


ProteinProphet Table 

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