Hi Luis, Is this option still hardcoded in the most up to date version of ProteinProphet?
On Tuesday, November 22, 2011 at 5:39:54 PM UTC-8 Luis wrote: > Hello Xiao, > You are correct: there is a lower limit in ProteinProphet to disregard > peptides below a certain probability and assigned weight. These values > (0.2 and 0.5, respectively) are unfortunately hard-coded in the program and > cannot be set by the user; in order to change them you would have to alter > the code and recompile the software. > Cheers, > --Luis > > > On Mon, Nov 21, 2011 at 8:23 AM, Xiao <xiaolov...@gmail.com> wrote: > >> Dear all, >> >> I have a question about the ProteinProphet. From the link of "More >> Analysis Info" in the ProteinProphet results view window, I found the >> "min peptide probability" to be 0.2. Is 0.2 the probability threshold >> that ProteinProphet uses to select the peptides? If yes, can I set a >> different value (if necessary)? >> >> Thanks, >> >> Xiao >> > >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to spctools...@googlegroups.com. >> To unsubscribe from this group, send email to >> spctools-discu...@googlegroups.com. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/6417474e-9e5f-4974-8ecf-ad508d022727n%40googlegroups.com.
