Re: [spctools-discuss] Precursor Intensity after Comet search

[Will Comstock]

Thank you David, exactly what I was looking for!

Best,
-Will

On Thursday, September 16, 2021 at 11:31:43 AM UTC-4 David Shteynberg wrote:

> Hi Will,
>
> You can use option -PREC in advanced options for xinteract "Analyze 
> Peptides" results to populate this column.Alternatively you can run 
> InteractParser with -I flag to get the same values in the pepXML results.
>
> Cheers,
> -David
>
> On Thu, Sep 16, 2021 at 8:11 AM Will Comstock  wrote:
>
>> Hello,
>>
>> After Comet searching mzXML files, appending the "Precursor Intensity" 
>> column in the pepXML viewer reveals that it contains no values. Is there a 
>> way to make Comet retrieve/retain precursor intensities for later use? 
>> Would running XPRESS in label-free mode essentially accomplish this? I am 
>> using TPP 6.0 for these analyses. 
>>
>> Respectfully,
>> -Will Comstock
>>
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>>  
>> 
>> .
>>
>

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Re: [spctools-discuss] Precursor Intensity after Comet search

['David Shteynberg' via spctools-discuss]

Hi Will,

You can use option -PREC in advanced options for xinteract "Analyze
Peptides" results to populate this column.Alternatively you can run
InteractParser with -I flag to get the same values in the pepXML results.

Cheers,
-David

On Thu, Sep 16, 2021 at 8:11 AM Will Comstock  wrote:

> Hello,
>
> After Comet searching mzXML files, appending the "Precursor Intensity"
> column in the pepXML viewer reveals that it contains no values. Is there a
> way to make Comet retrieve/retain precursor intensities for later use?
> Would running XPRESS in label-free mode essentially accomplish this? I am
> using TPP 6.0 for these analyses.
>
> Respectfully,
> -Will Comstock
>
> --
> You received this message because you are subscribed to the Google Groups
> "spctools-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to spctools-discuss+unsubscr...@googlegroups.com.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/spctools-discuss/862b0547-7498-46db-b660-2ee6e53c42f4n%40googlegroups.com
> 
> .
>

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[spctools-discuss] Precursor Intensity after Comet search

[Will Comstock]

Hello,

After Comet searching mzXML files, appending the "Precursor Intensity" 
column in the pepXML viewer reveals that it contains no values. Is there a 
way to make Comet retrieve/retain precursor intensities for later use? 
Would running XPRESS in label-free mode essentially accomplish this? I am 
using TPP 6.0 for these analyses. 

Respectfully,
-Will Comstock

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