Public bug reported:
Please backport conservation-code 20110309.0-1 (universe) from raring to
precise, quantal.
The builds run with succes, performed by backportpackage over pbuilder. The
installation of the packages were done in precise and quantal over gdebi with
success. A function test was performed in precise and quantal with utilisation
of the score_conservation script which is in conservation_code package. The
example 1 from
man score_conservation
runned with success.
Reason for the backport:
========================
The package concavity which is bending approval for backporting to quantal and
precise
is signifiacant enhanced with the capabilities of conservation-code.
concavity uses protein 3D information to calculate ligand binding sides, which
is the first stage in in silico pharmaceutical resarch(followed by docking e.g
with autodock-vina).
For enhancing the precision of the ligand binding side calculations concavity
needs informations about conserved chains in proteins. This calculation are
done by conservation-code.
Testing:
========
* precise:
[x] Package builds without modification
[x] conservation-code installs cleanly and runs
* quantal:
[x] Package builds without modification
[x] conservation-code installs cleanly and runs
No reverse dependencies
** Affects: precise-backports
Importance: Undecided
Status: Confirmed
** Affects: quantal-backports
Importance: Undecided
Status: Confirmed
** Changed in: precise-backports
Status: New => Confirmed
** Changed in: quantal-backports
Status: New => Confirmed
** Description changed:
Please backport conservation-code 20110309.0-1 (universe) from raring to
precise, quantal.
- The builds run with succes, performed by backportpackage over pbuilder. The
installation of the packages were done in precise and quantal over gdebi with
success. A functio test was performed in precise and quantal with utilisation
of the score_conservation script which is in conservation_code package. The
example 1 from
+ The builds run with succes, performed by backportpackage over pbuilder. The
installation of the packages were done in precise and quantal over gdebi with
success. A function test was performed in precise and quantal with utilisation
of the score_conservation script which is in conservation_code package. The
example 1 from
man score_conservation
runned with success.
-
Reason for the backport:
========================
The package concavity which is bending approval for backporting to quantal
and precise
is signifiacant enhanced with the capabilities of conservation-code.
- concavity uses protein 3D information to calculate ligand binding sides,
which is the first stage in in silico pharmaceutical resarch(followed by
docking e.g with autodock-vina).
- For enhancing the precision of the ligand binding side calculations concavity
needs informations about conserved chains in proteins. This calculation are
done by conservation-code.
+ concavity uses protein 3D information to calculate ligand binding sides,
which is the first stage in in silico pharmaceutical resarch(followed by
docking e.g with autodock-vina).
+ For enhancing the precision of the ligand binding side calculations concavity
needs informations about conserved chains in proteins. This calculation are
done by conservation-code.
Testing:
========
* precise:
[x] Package builds without modification
[x] conservation-code installs cleanly and runs
* quantal:
[x] Package builds without modification
[x] conservation-code installs cleanly and runs
No reverse dependencies
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https://bugs.launchpad.net/bugs/1168423
Title:
Please backport conservation-code 20110309.0-1 (universe) from raring
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