[Bug 296867]

2016-04-21 Thread Diane Trout
> Maybe no one wanted to spend time on this feature for a good reason.

Mostly no one wanted to spend time on this because development on
Telepathy stalled in 2014. It was largely being maintained by Collabora,
and their funding dried up.

I do have the ability to merge code to telepathy, but I don't have time
to work on a feature this complex.

Someone else will need to volunteer to implement this.

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Title:
  empathy needs to support OTR encryption

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[Bug 296867]

2016-04-18 Thread Diane Trout
KDE Telepathy has an implementation of OTR, There's a proxy component
that handles adding/removing the encryption before passing it to the
chat window.

It's in https://quickgit.kde.org/?p=ktp-common-internals.git=tree

There's also some UI level code in https://quickgit.kde.org/?p=ktp-text-
ui.git=tree

A quick skim of the #includes suggests otr-proxy mostly just depends on
TelepathyQt and not strongly on other KDE telepathy components.

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  empathy needs to support OTR encryption

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[Bug 1070873] Re: kde-telepathy, impossible to connect to gmail accounts

2013-09-24 Thread Diane Trout
I'm currently connecting to a google talk with the debian version and
I'm only getting a certificate warning.

The interesting advanced settings for the google talk account are:

Server Settings:
server address: talk.google.com
server port: 5223

Security Settings:
[X] Require encrypted connection.
[ ] Ignore SSL errors
[X] Use old-style SSL (greyed out)

I was curious what the settings for people who were having trouble are.

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  kde-telepathy, impossible to connect to gmail accounts

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[Bug 1068373] Re: emacs24 scroll bar not present

2012-10-22 Thread Diane Trout
I've been working around this problem with

LIBOVERLAY_SCROLLBAR=0 emacs24 

From what I understand from searching  whatever library is providing the
Ayatana hiding scroll bars has a manually curated blacklist of
incompatible applications. Emacs24 should be added to that list.

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Title:
  emacs24 scroll bar not present

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[Bug 973088] Re: tracker-miner-fs crashed with SIGABRT in g_assertion_message()

2012-09-18 Thread Diane Trout
12.04 tracker-miner-fs 14.0 crashed for me as well. I was using ecryptfs
and the gvfs mount pont created by deja-dup.

I built my own new version from 14.2 upstream and that also seems to be
able to run without the filesystem miner crashing.

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  tracker-miner-fs crashed with SIGABRT in g_assertion_message()

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-09-11 Thread Diane Trout
Good point @rmcd1024, I too am using 0.7.3-6ubuntu2.1~mtrudel1

One of my campus network support staff contacted me hoping that this bug
had a general solution released.

So what kind of additional testing do we need to do before this patch
can be moved out of a PPA and into the main distribution?

(I suggested the network support staff try the above PPA on a 32-bit
system since they'd thought they'd seen some wireless connectivity
differences between 32 and 64 bit.)

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Title:
  Unable to connect to WPA enterprise wireless

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-09-10 Thread Diane Trout
The version in http://ppa.launchpad.net/mathieu-tl/sru-staging/ubuntu
worked for me.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-08-08 Thread Diane Trout
@rcmd Could you try running a packet sniffer (like wireshark)?

For me this bug shows up when my client hello message includes an
Unknown 15 extension. One of the other patches that worked for some
people disabled the SessionTicket extension. The upstream bug report was
wondering if it was all unknown SSL extensions that was causing the bad
certificate error, or just some of them.

(In wireshark you can find what extensions are included in the by
looking in the Info column for Client Hello, and then expanding 802.1x
Authentication - Extensible Authentication Protocol - Secure Sockets
Layer - SSL or TLS(*) Record Layer: Handshake Protocol - Handshake
Protocol: Client Hello and look at the bottom of the drop down.

(*) for a working capture it was listed as TLS Record Layer, for a non
working capture it was listed as SSL Record Layer.

For me I can connect when the extension list is: ec_point_formats,
elliptic_curves, and SessionTicket TLS. But when Unknown 15 (AKA the
Heartbeat extension) is present I can't. The above comments seem to
imply that for others it doesn't work if there's the Session Ticket.

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  Unable to connect to WPA enterprise wireless

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-07-12 Thread Diane Trout
I tried the version of openssl lp:ubuntu/openssl revno: 80 tags:
1.0.1-4ubuntu4 but that version's changelog didn't seem to refer to Bug
#1020621, so I tried debian's 1.0.1c-3 which did refer to including a
fix for their version of the Bug #1020621 bug debbugs #675990.

Unfortunately neither worked as I was still getting the BAD CERTIFICATE
error from my schools access point.

Testing protocol was reinstall the default precise 
  * wpasupplicant 0.7.3-6ubuntu2, 
  * kill wpasupplicant
  * start wireshark
  * watch ssl messages

After I saw that it was failing again, I tried each of the openssl
builds listed above in turn.

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  Unable to connect to WPA enterprise wireless

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-07-12 Thread Diane Trout
One thing my wireshark captures were showing me, is that the more recent
versions of openssl were adding an extension 15. I tracked that down
as the tls heartbeat extension. Using debian's 1.0.1c package I
prevented openssl from adding the Heartbeat extension to the client
hello message, and reinstalled the official ubuntu precise
wpasupplicant_0.7.3-6ubuntu2_amd64.deb and shocking was able to connect.

The attached patch is more to show where in the code the problem I'm
having is located.

I also tried s-tlsext_heartbeat = SSL_TLSEXT_HB_DONT_RECV_REQUESTS;
which also seemed to suppress the heartbeat message.

Any suggestions for how we should see if this works for other people?


** Patch added: disable heartbeat.
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/969343/+attachment/3221694/+files/noheart.patch

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Title:
  Unable to connect to WPA enterprise wireless

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-06-28 Thread Diane Trout
I'm pretty sure the problem I had with connecting to my 802.1x network
had something to do with one of the new TLS extensions that was enabled.
It was pretty clear gnutls's TLS support isn't as complete as openssl's
(fewer extensions, fewer supported ciphers).  My packet inspections
showed the version of openssl that shipped with 12.04 enabled several
new extensions when compared to the 11.10 version of openssl or gnutls.

It'd be useful if there was a version wpasupplicant that would allows
easily changing which extensions are enabled so we can see which access
points support which extensions.

Would it be too obnoxious to add a configuration option to wpa
supplicant that allows manually twiddling flags on the
SSL_set_options(conn-ssl, options); call? Or would it be better to come
up some test tool that can test the various combinations of extensions
with 802.1x authentication?

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-06-12 Thread Diane Trout
@joshua-willowisp can you see what's going on the access point? I've got
my home router syslogging to a server which makes watching
authentication failures a bit easier.

Other than that you might want to install wireshark and packet sniff
your wireless interface. I feel pretty safe in saying if you're affected
by this bug during the 802.1x exchange you should see a bad
certificate error.

Could you connect to the access point before 12.04? Can other people
connect to the AP? There are some possible settings with allowed
encryption algorithms to try fiddling with as well.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-06-07 Thread Diane Trout
The SSL_OP_NO_TICKET patch suggested by @nickurak's (#49) worked for me.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-05-31 Thread Diane Trout
@nickurak, Our institution's WPA is marked as ArubaNet. The instructions
for configuring it which worked(*) with 11.10 are at
http://imss.caltech.edu/content/beavernet-configuration-linux

(*) I don't think dialog boxes were exactly right, but the instructions
were close enough.

One thing different is in the extension field wireshark is listing an
Unknown 15 as the last 5 bytes of the Client Hello message.

In a successful connection I ended up with Cipher Suite
TLS_DHE_RSA_WITH_AES_256_CBC_SHA (0x0039)

** Attachment added: Failed connection attempt (With one of the earlier 
versions of wpasupplicant + openssl)
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/969343/+attachment/3169858/+files/failed.tcpdump

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  Unable to connect to WPA enterprise wireless

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-05-31 Thread Diane Trout
A somewhat filtered successful connection attempt.

** Attachment added: Succesfull connection, probably using 
wpasupplicant+gnutls
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/969343/+attachment/3169859/+files/successful.pcap

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-05-01 Thread Diane Trout
Did you kill the wpa_supplicant process after installation? (Or reboot?)

If that doesn't work the other choice that worked for me is to install
openssl 1.0.0e from 11.10 (and reinstall the default wpa_supplicant). My
problem with that solution is the older version of openssl caused
library problems with 12.04's curl. But you may not use curl so it might
not be an issue in your case.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-20 Thread Diane Trout
I tried today with wpasupplicant 0.7.3-6ubuntu2 and libssl1.0.0
1.0.1-4ubuntu3 and still didn't work.

I just figured out how to export a detailed packet trace with wireshark
and am attaching the ClientHello and response messages from the non-
working libssl1.0.0_1.01-4ubuntu3, and the working libssl1.0.0-1.0.0e-
2ubuntu4 and my wpa supplicant that's using
libgnutls26-2.12.14-5ubuntu3.

In preparing the dump I did renumber my mac address to end in 11:22:33
and the mac address of the access point to aa:bb:cc

The working versions seem to report their Client Hello version as ssl
3.0 and the non-working one as TLS 1.0. The SSL versions list 18 ciphers
and the TLS version has 51 protocol suites.

** Attachment added: text dumps of working  non-working wpa2-enterprise 
client hello message  response. packets
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/969343/+attachment/3096489/+files/traces.txt

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-11 Thread Diane Trout
had the same non-working 261 byte client hello message that doesn't work
with wpasupplicant 0.7.3-6ubuntu2 and openssl 1.0.1-4ubuntu1.

Assuming updating, and killing /sbin/wpa_supplicant was enough to get
wpa supplicant to use the updated openssl

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-11 Thread Diane Trout
While we're waiting for a fix in openssl, I built a version
wpasupplicant linked against gnutls and placed it in a ppa
https://launchpad.net/~diane-trout/+archive/wpasupplicant-gnutls

It at least works well enough for me to connect to my companies
wpa2-enterprise and my homes wpa2-psk networks.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-09 Thread Diane Trout
Still broken with wpasupplicant 0.7.3-6ubuntu2  openssl 1.0.1-2ubuntu4

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[Bug 971753] Re: Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-06 Thread Diane Trout
*** This bug is a duplicate of bug 969343 ***
https://bugs.launchpad.net/bugs/969343

Yes that does look like the same. I'll switch to the previous bug, thank
you.

** This bug has been marked a duplicate of bug 969343
   Unable to connect to WPA enterprise wireless

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-06 Thread Diane Trout
I went looking for alternate versions of libssl 1.0.0 in
http://us.archive.ubuntu.com/ubuntu/pool/main/o/openssl/

To have any effect I needed to kill wpa_supplicant after installing the
alternate version of libssl.

libssl1.0.0_1.0.0e-2ubuntu4 works for me.

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[Bug 969343] Re: Unable to connect to WPA enterprise wireless

2012-04-06 Thread Diane Trout
I built a version of  wpasupplicant_0.7.3-6ubuntu2 that works for me, by
switching from openssl to gnutls.

I think wpasupplicant with openssl was offering 57 ciphers and with
gnutls it was around 15. (I didn't write the numbers down and am having
trouble getting it to regenerate the client hello message), so am not
certain.

If wpa supplicant is building the list of ciphers from openssl for the
client hello message, maybe it would also be possible disable some the
rare ones? I tried some of the obvious things like -DOPENSSL_NO_RC2
-DOPENSSL_NO_DES, but later realised that was probably if you'd disabled
those in openssl itself.

It looks like each cipher offered takes 2 bytes, and the failing openssl
packet was 261 bytes, so you just need to get it below 255 bytes -- so
remove 3 ciphers?

The patch I used to make it work, given the difficulties in getting
acceptance for gnutls, I bet it'd cause other problems.

--- wpasupplicant-0.7.3/debian/config/linux 2012-03-13 16:11:24.0 
-0700
+++ wpasupplicant-0.7.3.new/debian/config/linux 2012-04-06 13:26:03.230123515 
-0700
@@ -33,5 +33,5 @@
 CONFIG_PEERKEY=y
 CONFIG_IEEE80211W=y
-CONFIG_TLS=openssl
+CONFIG_TLS=gnutls
 CONFIG_CTRL_IFACE_DBUS=y
 CONFIG_CTRL_IFACE_DBUS_NEW=y

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[Bug 971753] [NEW] Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-02 Thread Diane Trout
Public bug reported:

I upgraded to ubuntu 12.04 a few days ago, and lost the ability to
connect to my works wpa2-enterprise network. I just had the chance to
reboot off of a 11.10 live CD to verify that 11.10 works, and thus that
it is not some problem with the wireless network.

Looking at wireshark, 12.04 sends a Client Hello which the AP reponds to
with Alert (Level: Fatal, Description: Bad Certificate) while 11.10
seems to accept the Client Hello message.

I upped wpasupplicant to debug log level on both attempts and am
attaching the part of syslog where I was attempting to connect to the
access point.

The question
https://answers.launchpad.net/ubuntu/+source/gnome-nettool/+question/183754
looked similar, but their workaround of upgrading the firmware seemed unlikely 
after I checked that both 11.10 and 12.04 are using the same firmware version.

I'm using a thinkpad with an intel wireless card:
root@myrada:/root# sudo lshw -C network; lsb_release -a; uname -a; sudo rfkill 
list; dmesg | grep -i firm
  *-network   
   description: Ethernet interface
   product: 82579LM Gigabit Network Connection
   vendor: Intel Corporation
   physical id: 19
   bus info: pci@:00:19.0
   logical name: eth0
   version: 04
   serial: f0:de:f1:6f:be:a3
   size: 1Gbit/s
   capacity: 1Gbit/s
   width: 32 bits
   clock: 33MHz
   capabilities: pm msi bus_master cap_list ethernet physical tp 10bt 
10bt-fd 100bt 100bt-fd 1000bt-fd autonegotiation
   configuration: autonegotiation=on broadcast=yes driver=e1000e 
driverversion=1.5.1-k duplex=full firmware=0.13-3 ip=131.215.54.184 latency=0 
link=yes multicast=yes port=twisted pair speed=1Gbit/s
   resources: irq:17 memory:f250-f251 memory:f252b000-f252bfff 
ioport:5080(size=32)
  *-network
   description: Wireless interface
   product: Centrino Advanced-N 6205
   vendor: Intel Corporation
   physical id: 0
   bus info: pci@:03:00.0
   logical name: wlan0
   version: 34
   serial: a0:88:b4:6a:44:3c
   width: 64 bits
   clock: 33MHz
   capabilities: pm msi pciexpress bus_master cap_list ethernet physical 
wireless
   configuration: broadcast=yes driver=iwlwifi 
driverversion=3.2.0-21-generic firmware=17.168.5.3 build 42301 latency=0 
link=no multicast=yes wireless=IEEE 802.11abgn
   resources: irq:20 memory:f240-f2401fff
No LSB modules are available.
Distributor ID: Ubuntu
Description:Ubuntu precise (development branch)
Release:12.04
Codename:   precise
Linux myrada 3.2.0-21-generic #34-Ubuntu SMP Fri Mar 30 04:25:35 UTC 2012 
x86_64 x86_64 x86_64 GNU/Linux
0: tpacpi_bluetooth_sw: Bluetooth
Soft blocked: yes
Hard blocked: no
1: phy0: Wireless LAN
Soft blocked: no
Hard blocked: no
[0.468570] [Firmware Bug]: ACPI: BIOS _OSI(Linux) query ignored
[   19.978002] iwlwifi :03:00.0: loaded firmware version 17.168.5.3 build 
42301
[   25.837662] IBM TrackPoint firmware: 0x0e, buttons: 3/3

** Affects: gnome-nettool (Ubuntu)
 Importance: Undecided
 Status: New

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 971753] Re: Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-02 Thread Diane Trout
Actually I think I attached the bug to the wrong component... I suspect
the problem is actually with wpasupplicant, but I don't know how to
adjust the bug.

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 971753] Re: Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-02 Thread Diane Trout
Ah thank you.

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 971753] Re: Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-02 Thread Diane Trout
** Attachment added: Network logging under 11.10 when I can connect to my 
wireless
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/971753/+attachment/2991987/+files/syslog.1110.works

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 971753] Re: Precise 12.04 cannot connect to wpa2-enterprise network using PEAP+MSCHAP2

2012-04-02 Thread Diane Trout
** Attachment added: debug syslog when I can't connect under 12.04
   
https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/971753/+attachment/2991991/+files/syslog.1204.bad

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Title:
  Precise 12.04 cannot connect to wpa2-enterprise network using
  PEAP+MSCHAP2

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[Bug 963633] Re: Unity 5.8: Login to blank screen (all black or just wallpaper)

2012-03-26 Thread Diane Trout
I also had this bug on a thinkpad x220 i7 sandy bridge tablet with
integated intel graphics after doing an upgrade from 10.10 to 12.04 beta
today Mar 26.

I ran DISPLAY=:0.0 unity --reset from vt2 and after a bunch of
messages unity 3d started up correctly and continued to work after a
relog.

Though in addition to warning messages there was a segfault when I ran
--reset.

Compiz: 1:09.7.2-0ubuntu1
Unity: 5.8.0-0ubuntu2

(some successful messages)
...
Setting update run_key

(compiz:8770) GLib-CRITICAL **: g_source remove: assertion `tag  0 '
failed

(compiz:8770) GLib-CRITICAL **: g_source remove: assertion `tag  0 '
failed

(compiz:8770) GLib-CRITICAL **: g_source remove: assertion `tag  0 ' failed
Segmentation Fault
$

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Title:
  Unity 5.8: Login to blank screen (all black or just wallpaper)

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[Bug 828593] Re: Gwibber Smooth scrolling

2011-10-20 Thread Diane Trout
An additional effect of this bug is if you have a long post that is
longer than your window, you can't read it.

This is mostly a problem with long facebook posts or short ones that
received a number of comments.

I usually try using the mouse wheel to scroll.

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Title:
  Gwibber Smooth scrolling

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[Bug 535404] Re: client freezes when sound device is selected

2011-09-01 Thread Diane Trout
Similar problem on ubuntu natty 11.04. Mumble had no audio on usb
headset and would hang when I ran the audio settings wizard until I
removed the [pulseaudio] section that was referring to a bluetooth
headset.

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Title:
  client freezes when sound device is selected

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[Bug 775213] Re: pymsnt 0.11.3-5 fails to start due to broken python-twisted-words 10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

2011-07-04 Thread Diane Trout
Ok I have a branch in launchpad to try and put together the patches
listed above.  The twisted svn server was down for much of today so I
didn't manage to make much progress.

The branch is at:
https://code.launchpad.net/~diane-trout/twisted/prepare-10.2.1

And I've only merged one of the patches in and verified that the number
of successful test cases incremented by 2.

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Title:
  pymsnt 0.11.3-5 fails to start due to broken python-twisted-words
  10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

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[Bug 775213] Re: pymsnt 0.11.3-5 fails to start due to broken python-twisted-words 10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

2011-06-27 Thread Diane Trout
@abma

You're welcome, I'm glad the updated package helped.

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Title:
  pymsnt 0.11.3-5 fails to start due to broken python-twisted-words
  10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

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[Bug 775213] Re: pymsnt 0.11.3-5 fails to start due to broken python-twisted-words 10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

2011-06-27 Thread Diane Trout
What help do you need?

I looked through your svn repository at
http://twistedmatrix.com/trac/browser/trunk and didn't see a release-
0_10_2_1 tag yet.

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Title:
  pymsnt 0.11.3-5 fails to start due to broken python-twisted-words
  10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

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[Bug 775213] Re: pymsnt 0.11.3-5 fails to start due to broken python-twisted-words 10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

2011-06-18 Thread Diane Trout
This also affects pyaimt 0.8.01-2

the twisted-words package was built with quilt so it was pretty easy to
put the patch to fix this problem into the ubuntu package. The problem
isn't likely to impact debian as they skipped the 10.2 version of
twisted-words and went to 11.0 which has the fix applied.

I uploaded a modified version of the package to my own ppa
https://launchpad.net/~diane-trout/+archive/nmu

The patch against the ubuntu package appears to be available at:
https://launchpadlibrarian.net/73753572/twisted-words_10.2.0-1_10.2.0-1ppa1.diff.gz

Though I tested building my own binary version of the debian package,
and didn't test the source archive I uploaded. (Though both were built
from the same extracted debian source package.

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  pymsnt 0.11.3-5 fails to start due to broken python-twisted-words
  10.2.0-1 (AttributeError: 'module' object has no attribute '_parse')

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[Bug 760131] Re: Power consumption raised significantly in natty

2011-06-12 Thread Diane Trout
Thinkpad X61 Tablet Core 2 Duo L7500 @ 1.6 GHz

about the same 280 wakeups per second between 2.3.38-8 and 2.3.38-9 from
linux-image-2.6.38-9-generic_2.6.38-9.43lp760131v201106060906_amd64.deb.
however ACPI estimated power usage goes from ~19W to 17.4W

I also tried 2.3.32-33-generic from the ubuntu pool, and got 18.4W with
320 wakeups per second.

In all cases I  started power top, enable everything it suggested and
wait for gwibber to finish syncing after boot. I had emacs, firefox
(open to simple pages), and gnome-terminal open, plus whatever starts by
default in 11.04. Once top showed the system mostly idle I pulled the AC
to get the ACPI power usage estimate.

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Title:
  Power consumption raised significantly in natty

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[Bug 725839] Re: ParserError parsing vcard string where ORG attribute contains a comma ,

2011-06-10 Thread Diane Trout
Yep I tried again with natty (11.04), the python-vobject installed by
the upgrade process (0.8.1c-3) and my script threw the same error.

I downloaded python-vobject_0.8.1c-4_all.deb from pool/main/p/python-
vobject and re-ran the script and it ran, producing output for all the
random contact information that landed in my address book.

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Title:
  ParserError parsing vcard string where ORG attribute contains a comma
  ,

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[Bug 788283] [NEW] srf2fastq produces invalid fastq quality scores.

2011-05-25 Thread Diane Trout
Public bug reported:

Description:Ubuntu 10.04.2 LTS
Release:10.04

Version 1.12.2-1 produces fastq quality scores that contain non-
printable characters.

Incorrect result:
/usr/bin/srf2fastq woldlab_070829_USI-EAS44_0017_FC11055_1.srf | head -4 | od 
-t a
000   @   0   7   0   8   2   9   _   U   S   I   -   E   A   S   4
020   4   _   0   0   1   7   _   F   C   1   1   0   5   5   _   1
040   _   1   _   6   8   5   :   4   3   8  nl   A   C   C   A   T
060   A   T   A   A   G   T   T   C   C   A   N   T   T   G   C   T
100   G   N   A   N   A   C   C   N   N   T   C   T   C   C   N  nl
120   +  nl   I   I   I   I   I   I   I   I   I   I   I   I   I   I
140   I  fs   I   I   .   I   I   #  fs   I  fs   I   I   I  fs  fs
160   !   G   1   I   '  fs  nl
---
I backported staden-io-lib-utils 1.12.4-1 from 11.04 to 10.04.2
which when run on the same file produces valid fastq quality scores. 

/usr/bin/srf2fastq woldlab_070829_USI-EAS44_0017_FC11055_1.srf | head -4 | od 
-t a
000   @   0   7   0   8   2   9   _   U   S   I   -   E   A   S   4
020   4   _   0   0   1   7   _   F   C   1   1   0   5   5   _   1
040   _   1   _   6   8   5   :   4   3   8  nl   A   C   C   A   T
060   A   T   A   A   G   T   T   C   C   A   N   T   T   G   C   T
100   G   N   A   N   A   C   C   N   N   T   C   T   C   C   N  nl
120   +  nl   I   I   I   I   I   I   I   I   I   I   I   I   I   I
140   I   !   I   I   .   I   I   #   !   I   !   I   I   I   !   !
160   !   G   1   I   '   !  nl

(note no fs characters)

I'm attaching the small SRF file I'm using for my own test cases. (No
one wants to sling around a full SRF dataset).

** Affects: staden-io-lib (Ubuntu)
 Importance: Undecided
 Status: New

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[Bug 788283] Re: srf2fastq produces invalid fastq quality scores.

2011-05-25 Thread Diane Trout
** Attachment added: small SRF file used for testing srf2fastq
   
https://bugs.launchpad.net/bugs/788283/+attachment/2142648/+files/woldlab_070829_USI-EAS44_0017_FC11055_1.srf

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[Bug 725839] [NEW] ParserError parsing vcard string where ORG attribute contains a comma ,

2011-02-26 Thread Diane Trout
Public bug reported:

Binary package hint: python-vobject

I'm using ubuntu 10.10 with python-vobject Version: 0.8.1c-3

I was parsing all the vcard files from evolution using python-evolution.
I discovered that some of my entries had an ORG value with an embedded
comma.

I was able to trigger the problem with this example vcard.

vobject.readOne('BEGIN:VCARD\r\nVERSION:3.0\r\nFN:fn\r\nN:n\r\nORG:Name\\,
AB.;\r\nEND:VCARD\r\n')

with the version in the ubuntu repository I get the stack trace.

Traceback (most recent call last):
  File abeds.py, line 179, in module
sys.exit(main())
  File abeds.py, line 34, in main
foaf([])
  File abeds.py, line 48, in foaf
vc_contact = vobject.readOne(vc_string)
  File /usr/lib/pymodules/python2.6/vobject/base.py, line 1082, in readOne
ignoreUnreadable, allowQP).next()
  File /usr/lib/pymodules/python2.6/vobject/base.py, line 1059, in 
readComponents
if transform: component.transformChildrenToNative()
  File /usr/lib/pymodules/python2.6/vobject/base.py, line 601, in 
transformChildrenToNative
childArray[i]=childArray[i].transformToNative()
  File /usr/lib/pymodules/python2.6/vobject/base.py, line 122, in 
transformToNative
return self.behavior.transformToNative(self)
  File /usr/lib/pymodules/python2.6/vobject/vcard.py, line 290, in 
transformToNative
obj.value = splitFields(obj.value)
  File /usr/lib/pymodules/python2.6/vobject/vcard.py, line 213, in splitFields
stringToTextValues(string, listSeparator=';', charList=';')]
  File /usr/lib/pymodules/python2.6/vobject/icalendar.py, line 1681, in 
stringToTextValues
raise ParseError(error: illegal escape sequence: '\\%s' % (char,))
vobject.base.ParseError: At line 11: error: illegal escape sequence: '\,'

with the native version in the package before patches are applied I get:
print 
vobject.readOne('BEGIN:VCARD\r\nVERSION:3.0\r\nFN:fn\r\nN:n\r\nORG:Name\\, 
AB.;\r\nEND:VCARD\r\n')
VCARD| [VERSION{}3.0, FN{}fn, N{}   n , ORG{}[u'Name, AB.']]
which is what was expecting (or at least hoping would happen)

This problem is introduced by commenting out the leave characters in for later 
passes append and adding the exception.
introduced by debian/patches/0003-Treat-untils-as-floating.patch

If I put the current.append back in and remove the raise error, the
parser does read all my vcards.

I'm not sure what breaks elsewhere though.

Thanks, Diane

** Affects: python-vobject (Ubuntu)
 Importance: Undecided
 Status: New

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Title:
  ParserError parsing vcard string where ORG attribute contains a comma
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[Bug 123185] Re: qemu completely broken with current version of bochbios

2008-02-01 Thread Diane Trout
When trying to install hardy server alpha3 into a qemu session on a
amd64 host, it kept failing when trying to detect the virtual cdrom.
Upgrading from gutsy's bochsbios-2.3-2etch1 to lenny's bochsbios-2.3.5-1
fixed the cdrom detection problem.

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[Bug 155213] Re: IBM Thinkpad A21p - Volume, Brightness, and ThinkPad buttons broken with gutsy [regression]

2008-01-07 Thread Diane Trout
I have a X61 tablet, and the multimedia keys stopped working with a
recent security update.

I was able to make it work again by adding

keycode 129 = XF86AudioMedia
keycode 144 = XF86AudioPrev
keycode 153 = XF86AudioNext
keycode 160 = XF86AudioMute
keycode 161 = XF86Calculator
keycode 162 = XF86AudioPause
keycode 164 = XF86AudioStop
keycode 174 = XF86AudioLowerVolume
keycode 176 = XF86AudioRaiseVolume
keycode 223 = XF86Standby

to my ~/.Xmodmap (an idea I got somewhere else on the net).

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