[Bug 1041742] Re: netcdf build against parallel HDF5
** Changed in: netcdf (Debian) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
** Changed in: netcdf (Debian) Status: Unknown => New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
** Bug watch added: Debian Bug tracker #708638 http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=708638 ** Changed in: netcdf (Debian) Importance: Undecided => Unknown ** Changed in: netcdf (Debian) Status: New => Unknown ** Changed in: netcdf (Debian) Remote watch: None => Debian Bug tracker #708638 -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
Hi, can you please forward the patches on a new Debian bug? This should be fixed in Debian before, I think. I'll be happy to sponsor/sync the package after. -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
I did some work for this in https://launchpad.net/~nschloe/+archive /trilinos-nightly which you may want to check out. It's based off of netCDF's latest dev version which provides a CMake builds, doing away with many of the flaws previously present. -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
I'd like to support the idea of having a libnetcdf-openmpi-dev package, too. Having it would be a grate relief. Well, I tried to build it my own, however, with no success. Maybe someone could help me out with this? The following is what I did: 1. Sources and build dependencies > apt-get source libnetcdf-dev > sudo apt-get build-dep libnetcdf-dev 2. Replace libhdf5-dev (serial) by libhdf5-openmpi-dev > sudo apt-get install libhdf5-openmpi-dev 3. Changing build dependencies in debian/control line 6: libhdf5-dev -> libhdf5-openmpi-dev 4. Modify /debian/rules line 14: --enable-parallel-tests line 15: mpif90 line 16: mpic++ line 17: mpicc 5. Rebuild package > dpkg-buildpackage -us -uc This however does not work. The build-process terminates with some error messages due to that reason: > libtool: link: mpif90 -shared -L/usr/lib/openmpi/lib -l > -L/usr/lib/gcc/x86_64-linux-gnu/4.7 Sure, -l directly followed by -L wont work ... Does anyone have an idea what is going wrong here? Cheers, Stefan -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
I support the idea of a package libnetcdf-openmpi-dev. The current state is quite unsatisfying. It took me ages to find out that the library is built with hdf5 support, but not with hdf5-parallel. Surprisingly, the netcdf routines themself did not give any warning, when trying to use parallel I/O and instead just opened the file in serial mode. ** Also affects: netcdf (Debian) Importance: Undecided Status: New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1041742] Re: netcdf build against parallel HDF5
Status changed to 'Confirmed' because the bug affects multiple users. ** Changed in: netcdf (Ubuntu) Status: New => Confirmed -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1041742 Title: netcdf build against parallel HDF5 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/netcdf/+bug/1041742/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
