Public bug reported: The package jalview failed to Build in the current Ubuntu development version:
Full log at: https://launchpadlibrarian.net/338226508/buildlog_ubuntu- artful-amd64.jalview_2.7.dfsg-5_BUILDING.txt.gz [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:952: error: cannot find symbol [javac] public void notifyCallback(EnumCallback type, Object[] data) [javac] ^ [javac] symbol: class EnumCallback [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1006: error: cannot find symbol [javac] public boolean notifyEnabled(EnumCallback callbackPick) [javac] ^ [javac] symbol: class EnumCallback [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ws/EnfinEnvision2OneWay.java:67: error: package com.lowagie.text.html does not exist [javac] import com.lowagie.text.html.HtmlEncoder; [javac] ^ [javac] «BUILDDIR»/src/jalview/ws/rest/params/SeqVector.java:37: error: cannot find symbol [javac] import org.jmol.util.ArrayUtil; [javac] ^ [javac] symbol: class ArrayUtil [javac] location: package org.jmol.util [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmol.java:32: error: cannot find symbol [javac] import org.jmol.viewer.JmolConstants; [javac] ^ [javac] symbol: class JmolConstants [javac] location: package org.jmol.viewer [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmolBinding.java:30: error: cannot find symbol [javac] import org.jmol.popup.JmolPopup; [javac] ^ [javac] symbol: class JmolPopup [javac] location: package org.jmol.popup [javac] «BUILDDIR»/src/jalview/bin/Jalview.java:756: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] gbcons = gbindingc.getConstructor(null); [javac] ^ [javac] cast to Class for a varargs call [javac] cast to Class[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/bin/Jalview.java:757: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] gbinding = gbcons.newInstance(null); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/gui/Desktop.java:2177: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] Constructor gccons = gcClass.getConstructor(null); [javac] ^ [javac] cast to Class for a varargs call [javac] cast to Class[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/gui/Desktop.java:2181: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] java.lang.reflect.Method run = gcClass.getMethod("run", null); [javac] ^ [javac] cast to Class for a varargs call [javac] cast to Class[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/gui/Desktop.java:2182: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] Object gc = gccons.newInstance(null); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/gui/Desktop.java:2185: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] run.invoke(gc, null); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1556: error: resizeInnerPanel(String) in JalviewJmolBinding cannot implement resizeInnerPanel(String) in JmolStatusListener [javac] public void resizeInnerPanel(String data) [javac] ^ [javac] return type void is not compatible with int[] [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:239: error: cannot find symbol [javac] viewer.setModeMouse(org.jmol.viewer.JmolConstants.MOUSE_NONE); [javac] ^ [javac] symbol: class JmolConstants [javac] location: package org.jmol.viewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:636: error: cannot find symbol [javac] return new Color(viewer.getAtomArgb(atomIndex)); [javac] ^ [javac] symbol: method getAtomArgb(int) [javac] location: variable viewer of type JmolViewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:690: error: cannot find symbol [javac] String mset[] = new String[viewer.getModelCount()]; [javac] ^ [javac] symbol: method getModelCount() [javac] location: variable viewer of type JmolViewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:693: error: cannot find symbol [javac] mset[0] = viewer.getModelFileName(0); [javac] ^ [javac] symbol: method getModelFileName(int) [javac] location: variable viewer of type JmolViewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:696: error: cannot find symbol [javac] mset[j] = viewer.getModelFileName(i); [javac] ^ [javac] symbol: method getModelFileName(int) [javac] location: variable viewer of type JmolViewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:873: error: cannot find symbol [javac] .getModelFileName(new Integer(mdlId).intValue() - 1); [javac] ^ [javac] symbol: method getModelFileName(int) [javac] location: variable viewer of type JmolViewer [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:956: error: strings in switch are not supported in -source 1.5 [javac] switch (type) [javac] ^ [javac] (use -source 7 or higher to enable strings in switch) [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:958: error: cannot find symbol [javac] case LOADSTRUCT: [javac] ^ [javac] symbol: variable LOADSTRUCT [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:964: error: cannot find symbol [javac] case PICK: [javac] ^ [javac] symbol: variable PICK [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:968: error: cannot find symbol [javac] case HOVER: [javac] ^ [javac] symbol: variable HOVER [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:972: error: cannot find symbol [javac] case SCRIPT: [javac] ^ [javac] symbol: variable SCRIPT [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:976: error: cannot find symbol [javac] case ECHO: [javac] ^ [javac] symbol: variable ECHO [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:979: error: cannot find symbol [javac] case MESSAGE: [javac] ^ [javac] symbol: variable MESSAGE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:983: error: cannot find symbol [javac] case ERROR: [javac] ^ [javac] symbol: variable ERROR [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:986: error: cannot find symbol [javac] case SYNC: [javac] ^ [javac] symbol: variable SYNC [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:987: error: cannot find symbol [javac] case RESIZE: [javac] ^ [javac] symbol: variable RESIZE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:990: error: cannot find symbol [javac] case MEASURE: [javac] ^ [javac] symbol: variable MEASURE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:992: error: cannot find symbol [javac] case CLICK: [javac] ^ [javac] symbol: variable CLICK [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1008: error: strings in switch are not supported in -source 1.5 [javac] switch (callbackPick) [javac] ^ [javac] (use -source 7 or higher to enable strings in switch) [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1010: error: cannot find symbol [javac] case ECHO: [javac] ^ [javac] symbol: variable ECHO [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1011: error: cannot find symbol [javac] case LOADSTRUCT: [javac] ^ [javac] symbol: variable LOADSTRUCT [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1012: error: cannot find symbol [javac] case MEASURE: [javac] ^ [javac] symbol: variable MEASURE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1013: error: cannot find symbol [javac] case MESSAGE: [javac] ^ [javac] symbol: variable MESSAGE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1014: error: cannot find symbol [javac] case PICK: [javac] ^ [javac] symbol: variable PICK [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1015: error: cannot find symbol [javac] case SCRIPT: [javac] ^ [javac] symbol: variable SCRIPT [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1016: error: cannot find symbol [javac] case HOVER: [javac] ^ [javac] symbol: variable HOVER [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1017: error: cannot find symbol [javac] case ERROR: [javac] ^ [javac] symbol: variable ERROR [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1019: error: cannot find symbol [javac] case RESIZE: [javac] ^ [javac] symbol: variable RESIZE [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1020: error: cannot find symbol [javac] case SYNC: [javac] ^ [javac] symbol: variable SYNC [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1021: error: cannot find symbol [javac] case CLICK: [javac] ^ [javac] symbol: variable CLICK [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1022: error: cannot find symbol [javac] case ANIMFRAME: [javac] ^ [javac] symbol: variable ANIMFRAME [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1023: error: cannot find symbol [javac] case MINIMIZATION: [javac] ^ [javac] symbol: variable MINIMIZATION [javac] location: class JalviewJmolBinding [javac] «BUILDDIR»/src/jalview/ext/jmol/JalviewJmolBinding.java:1555: error: method does not override or implement a method from a supertype [javac] @Override [javac] ^ [javac] «BUILDDIR»/src/jalview/gui/AppJmolBinding.java:41: error: AppJmolBinding is not abstract and does not override abstract method getJSpecViewProperty(String) in JmolStatusListener [javac] public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding [javac] ^ [javac] «BUILDDIR»/src/jalview/gui/AppJmolBinding.java:155: error: cannot find symbol [javac] jmolpopup = new JmolPopup(); [javac] ^ [javac] symbol: class JmolPopup [javac] location: class AppJmolBinding [javac] «BUILDDIR»/src/jalview/gui/AppJmolBinding.java:200: error: cannot find symbol [javac] return new AppConsole(viewer, consolePanel, buttonsToShow); [javac] ^ [javac] symbol: class AppConsole [javac] location: class AppJmolBinding [javac] «BUILDDIR»/src/jalview/gui/RestInputParamEditDialog.java:55: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] .newInstance(null)); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/gui/RestInputParamEditDialog.java:173: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] jtype = (InputType) (type.getConstructor().newInstance(null)); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/ws/rest/RestServiceDescription.java:836: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] jinput = (InputType) (type.getConstructor().newInstance(null)); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/ws/seqfetcher/ASequenceFetcher.java:239: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] Object proxyObj = dbSourceProxy.getConstructor(null) [javac] ^ [javac] cast to Class for a varargs call [javac] cast to Class[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/ws/seqfetcher/ASequenceFetcher.java:240: warning: non-varargs call of varargs method with inexact argument type for last parameter; [javac] .newInstance(null); [javac] ^ [javac] cast to Object for a varargs call [javac] cast to Object[] for a non-varargs call and to suppress this warning [javac] «BUILDDIR»/src/jalview/ws/EnfinEnvision2OneWay.java:327: error: cannot find symbol [javac] descr = HtmlEncoder.encode(descr); [javac] ^ [javac] symbol: variable HtmlEncoder [javac] location: class EnfinEnvision2OneWay [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmolBinding.java:32: error: AppletJmolBinding is not abstract and does not override abstract method getJSpecViewProperty(String) in JmolStatusListener [javac] class AppletJmolBinding extends jalview.ext.jmol.JalviewJmolBinding [javac] ^ [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmolBinding.java:182: error: resizeInnerPanel(String) in AppletJmolBinding cannot implement resizeInnerPanel(String) in JmolStatusListener [javac] public void resizeInnerPanel(String data) [javac] ^ [javac] return type void is not compatible with int[] [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmolBinding.java:120: error: cannot find symbol [javac] jmolpopup = new JmolPopup(); [javac] ^ [javac] symbol: class JmolPopup [javac] location: class AppletJmolBinding [javac] «BUILDDIR»/src/jalview/appletgui/AppletJmolBinding.java:153: error: cannot find symbol [javac] JmolAppConsoleInterface appc = new org.jmol.console.AppletConsole().getAppConsole(viewer2); [javac] ^ [javac] symbol: method getAppConsole(JmolViewer) [javac] location: class AppletConsole [javac] «BUILDDIR»/src/jalview/appletgui/ExtJmol.java:42: error: ExtJmol is not abstract and does not override abstract method getJSpecViewProperty(String) in JmolStatusListener [javac] public class ExtJmol extends JalviewJmolBinding [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 54 errors [javac] 20 warnings BUILD FAILED «BUILDDIR»/build.xml:202: Compile failed; see the compiler error output for details. Total time: 9 seconds /usr/share/cdbs/1/class/ant.mk:39: recipe for target 'debian/stamp-ant-build' failed make: *** [debian/stamp-ant-build] Error 1 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ** Affects: jalview (Ubuntu) Importance: High Status: New ** Affects: jalview (Debian) Importance: Undecided Status: New ** Tags: ftbfs ** Changed in: jalview (Ubuntu) Importance: Undecided => High ** Tags added: ftbfs ** Bug watch added: Debian Bug tracker #849025 https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=849025 ** Changed in: jalview (Debian) Remote watch: None => Debian Bug tracker #849025 -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1721313 Title: jalview: FTBFS: error: cannot find symbol EnumCallback To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/jalview/+bug/1721313/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
