Public bug reported:

Upgraded to 21.10.  I am using Ubuntu Tweaks to set a bottom of screen taskbar. 
Nautilus (Files) was pinned to the taskbar.  I discovered that Waland was 
incompatible with my graphics card, so switched to Xorg.  I think at this point 
the Files icon disappeared (and just possibly some others I have not noticed).  
I can launch Nautilus from the launcher, but the icon does not appear.
Nautilus version 1:40.2-1ubuntu1

Expected behaviour 1:  The pinned icon would remain visible on the taskbar.
Observed behaviour 1:  The pinned icon disappeared from the taskbar.

Expected behaviour 2:  When Nautilus is open the icon will be visible on the 
taskbar.
Observed behaviour 2:  When Nautilus is open the icon is not visible on the 
taskbar.

ProblemType: Bug
DistroRelease: Ubuntu 21.10
Package: nautilus 1:40.2-1ubuntu1
ProcVersionSignature: Ubuntu 5.13.0-20.20-generic 5.13.14
Uname: Linux 5.13.0-20-generic x86_64
ApportVersion: 2.20.11-0ubuntu70
Architecture: amd64
CasperMD5CheckResult: pass
CurrentDesktop: ubuntu:GNOME
Date: Sun Oct 24 21:28:18 2021
ExecutablePath: /usr/bin/nautilus
InstallationDate: Installed on 2021-05-27 (149 days ago)
InstallationMedia: Ubuntu 21.04 "Hirsute Hippo" - Release amd64 (20210420)
ProcEnviron:
 SHELL=/bin/bash
 XDG_RUNTIME_DIR=<set>
 PATH=(custom, no user)
 LANGUAGE=en_GB:en
 LANG=en_GB.UTF-8
SourcePackage: nautilus
UpgradeStatus: Upgraded to impish on 2021-10-14 (9 days ago)
usr_lib_nautilus:
 evince                            40.4-2
 file-roller                       3.40.0-2
 nautilus-dropbox                  2019.02.14-1ubuntu1
 nautilus-extension-gnome-terminal 3.38.1-1ubuntu2
 nautilus-share                    0.7.3-2ubuntu4

** Affects: nautilus (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug impish

** Summary changed:

- Nautilus icon missing from taskbar
+ Nautilus icon missing from taskbar (21.10; Xorg)

** Description changed:

- Upgraded to 21.10.  I am using Ubuntu Tweaks to set a bottom of screen 
taskbar. Nautilus (Files) was pinned to the taskbar.  I discovered that Waland 
was incompatible with my graphics card, so switched to Xorg.  I think at this 
point the Fiels icon disappeared (and just possibly some others I have not 
noticed).  I can launch Nautilus from the launcher, but the icon does not 
appear. 
+ Upgraded to 21.10.  I am using Ubuntu Tweaks to set a bottom of screen 
taskbar. Nautilus (Files) was pinned to the taskbar.  I discovered that Waland 
was incompatible with my graphics card, so switched to Xorg.  I think at this 
point the Files icon disappeared (and just possibly some others I have not 
noticed).  I can launch Nautilus from the launcher, but the icon does not 
appear.
  Nautilus version 1:40.2-1ubuntu1
  
  Expected behaviour 1:  The pinned icon would remain visible on the taskbar.
  Observed behaviour 1:  The pinned icon disappeared from the taskbar.
  
  Expected behaviour 2:  When Nautilus is open the icon will be visible on the 
taskbar.
  Observed behaviour 2:  When Nautilus is open the icon is not visible on the 
taskbar.
  
  ProblemType: Bug
  DistroRelease: Ubuntu 21.10
  Package: nautilus 1:40.2-1ubuntu1
  ProcVersionSignature: Ubuntu 5.13.0-20.20-generic 5.13.14
  Uname: Linux 5.13.0-20-generic x86_64
  ApportVersion: 2.20.11-0ubuntu70
  Architecture: amd64
  CasperMD5CheckResult: pass
  CurrentDesktop: ubuntu:GNOME
  Date: Sun Oct 24 21:28:18 2021
  ExecutablePath: /usr/bin/nautilus
  InstallationDate: Installed on 2021-05-27 (149 days ago)
  InstallationMedia: Ubuntu 21.04 "Hirsute Hippo" - Release amd64 (20210420)
  ProcEnviron:
-  SHELL=/bin/bash
-  XDG_RUNTIME_DIR=<set>
-  PATH=(custom, no user)
-  LANGUAGE=en_GB:en
-  LANG=en_GB.UTF-8
+  SHELL=/bin/bash
+  XDG_RUNTIME_DIR=<set>
+  PATH=(custom, no user)
+  LANGUAGE=en_GB:en
+  LANG=en_GB.UTF-8
  SourcePackage: nautilus
  UpgradeStatus: Upgraded to impish on 2021-10-14 (9 days ago)
  usr_lib_nautilus:
-  evince                            40.4-2
-  file-roller                       3.40.0-2
-  nautilus-dropbox                  2019.02.14-1ubuntu1
-  nautilus-extension-gnome-terminal 3.38.1-1ubuntu2
-  nautilus-share                    0.7.3-2ubuntu4
+  evince                            40.4-2
+  file-roller                       3.40.0-2
+  nautilus-dropbox                  2019.02.14-1ubuntu1
+  nautilus-extension-gnome-terminal 3.38.1-1ubuntu2
+  nautilus-share                    0.7.3-2ubuntu4

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https://bugs.launchpad.net/bugs/1948599

Title:
  Nautilus icon missing from taskbar (21.10; Xorg)

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