[Bug 2069647] Re: [SRU] extractreads fails to run
This bug was fixed in the package obitools - 1.2.13+dfsg-3ubuntu0.1 --- obitools (1.2.13+dfsg-3ubuntu0.1) focal; urgency=medium * Fix crash from use of heapsort. (LP: #2062068) * Use pickle to fix crash with extractreads. (LP: #2069647) -- Sudip Mukherjee Sat, 29 Jun 2024 22:40:32 +0100 -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
This bug was fixed in the package obitools - 1.2.13+dfsg-4ubuntu0.1 --- obitools (1.2.13+dfsg-4ubuntu0.1) jammy; urgency=medium * Fix crash from use of heapsort. (LP: #2062068) * Use pickle to fix crash with extractreads. (LP: #2069647) -- Sudip Mukherjee Sat, 29 Jun 2024 21:55:07 +0100 ** Changed in: obitools (Ubuntu Jammy) Status: Fix Committed => Fix Released ** Changed in: obitools (Ubuntu Focal) Status: Fix Committed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
This bug was fixed in the package obitools - 1.2.13+dfsg-7ubuntu0.1 --- obitools (1.2.13+dfsg-7ubuntu0.1) noble; urgency=medium * Fix crash from use of heapsort. (LP: #2062068) * Use pickle to fix crash with extractreads. (LP: #2069647) -- Sudip Mukherjee Sat, 29 Jun 2024 20:05:29 +0100 ** Changed in: obitools (Ubuntu Noble) Status: Fix Committed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
I can confirm that obitools from focal-proposed has fixed the bug for me. Test done: install obitools and try to execute "extractreads --help" and confirmed that it still fails. Added focal-proposed to apt sources. install obitools from focal-proposed. execute "extractreads --help" and confirmed that it displays the help message. Package tested: $ apt-cache policy obitools obitools: Installed: 1.2.13+dfsg-3ubuntu0.1 Candidate: 1.2.13+dfsg-3ubuntu0.1 Version table: *** 1.2.13+dfsg-3ubuntu0.1 500 500 http://gb.archive.ubuntu.com/ubuntu focal-proposed/universe amd64 Packages 100 /var/lib/dpkg/status 1.2.13+dfsg-3 500 500 http://gb.archive.ubuntu.com/ubuntu focal/universe amd64 Packages ** Tags removed: verification-needed verification-needed-focal verification-needed-jammy verification-needed-noble ** Tags added: verification-done verification-done-focal verification-done-jammy verification-done-noble -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
I can confirm that obitools from jammy-proposed has fixed the bug for me. Test done: install obitools and try to execute "extractreads --help" and confirmed that it still fails. Added jammy-proposed to apt sources. install obitools from jammy-proposed. execute "extractreads --help" and confirmed that it displays the help message. Package tested: $ apt-cache policy obitools obitools: Installed: 1.2.13+dfsg-4ubuntu0.1 Candidate: 1.2.13+dfsg-4ubuntu0.1 Version table: *** 1.2.13+dfsg-4ubuntu0.1 500 500 http://gb.archive.ubuntu.com/ubuntu jammy-proposed/universe amd64 Packages 100 /var/lib/dpkg/status 1.2.13+dfsg-4build1 500 500 http://gb.archive.ubuntu.com/ubuntu jammy/universe amd64 Packages -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
I can confirm that obitools from noble-proposed has fixed the bug for me. Test done: install obitools and try to execute "extractreads --help" and confirmed that it still fails. Added noble-proposed to apt sources. install obitools from noble-proposed. execute "extractreads --help" and confirmed that it displays the help message. Package tested: $ apt-cache policy obitools obitools: Installed: 1.2.13+dfsg-7ubuntu0.1 Candidate: 1.2.13+dfsg-7ubuntu0.1 Version table: *** 1.2.13+dfsg-7ubuntu0.1 100 100 http://gb.archive.ubuntu.com/ubuntu noble-proposed/universe amd64 Packages 100 /var/lib/dpkg/status 1.2.13+dfsg-7build1 500 500 http://gb.archive.ubuntu.com/ubuntu noble/universe amd64 Packages -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
Hello Sudip, or anyone else affected, Accepted obitools into noble-proposed. The package will build now and be available at https://launchpad.net/ubuntu/+source/obitools/1.2.13+dfsg-7ubuntu0.1 in a few hours, and then in the -proposed repository. Please help us by testing this new package. See https://wiki.ubuntu.com/Testing/EnableProposed for documentation on how to enable and use -proposed. Your feedback will aid us getting this update out to other Ubuntu users. If this package fixes the bug for you, please add a comment to this bug, mentioning the version of the package you tested, what testing has been performed on the package and change the tag from verification-needed- noble to verification-done-noble. If it does not fix the bug for you, please add a comment stating that, and change the tag to verification- failed-noble. In either case, without details of your testing we will not be able to proceed. Further information regarding the verification process can be found at https://wiki.ubuntu.com/QATeam/PerformingSRUVerification . Thank you in advance for helping! N.B. The updated package will be released to -updates after the bug(s) fixed by this package have been verified and the package has been in -proposed for a minimum of 7 days. ** Changed in: obitools (Ubuntu Noble) Status: In Progress => Fix Committed ** Tags added: verification-needed verification-needed-noble -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
** Also affects: obitools (Ubuntu Focal) Importance: Undecided Status: New ** Changed in: obitools (Ubuntu Focal) Status: New => In Progress -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
** Also affects: obitools (Ubuntu Jammy) Importance: Undecided Status: New ** Changed in: obitools (Ubuntu Jammy) Status: New => In Progress -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
** Also affects: obitools (Ubuntu Mantic) Importance: Undecided Status: New ** Changed in: obitools (Ubuntu Mantic) Status: New => In Progress ** Changed in: obitools (Ubuntu Noble) Assignee: Sudip Mukherjee (sudipmuk) => (unassigned) -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
** Description changed: - extractreads fails to run on Oracular with the following error: + [ Impact ] + extractreads fails to run and crashes immediately with the error: $ extractreads Traceback (most recent call last): File "/usr/bin/extractreads", line 12, in from obitools.word._readindex import ReadIndex,minword File "src/obitools/word/_readindex.pyx", line 11, in init obitools.word._readindex ModuleNotFoundError: No module named 'cPickle' + + [ Test Plan ] + + install obitools. + + Execute "extractreads --help" + + If the package is not fixed, it will fail with the above error. + + With the fixed package, it will print the help menu. + + [ Where problems could occur ] + + There should not be any regression due to this change. The code modification from "cPickle" to "pickle" was done during Python2 to Python3 migration. + I guess this reference to cPickle was overlooked and missed at that time. + + [ Other Info ] + + This has been fixed in Debian and has synced with Oracular, so Oracular + is now fixed. + + [ Original Bug Description ] + + extractreads fails to run on Oracular with the following error: + + $ extractreads + Traceback (most recent call last): + File "/usr/bin/extractreads", line 12, in + from obitools.word._readindex import ReadIndex,minword + File "src/obitools/word/_readindex.pyx", line 11, in init obitools.word._readindex + ModuleNotFoundError: No module named 'cPickle' -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 2069647] Re: [SRU] extractreads fails to run
** Summary changed: - extractreads fails to run on oracular + [SRU] extractreads fails to run -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/2069647 Title: [SRU] extractreads fails to run To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/obitools/+bug/2069647/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
