[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
Thanks for the logs. I just checked and: ... Selecting previously deselected package python2.6-minimal. Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.2~rc1-0ubuntu2_i386.deb) ... Processing triggers for man-db ... Setting up python2.6-minimal (2.6.2~rc1-0ubuntu2) ... Linking and byte-compiling packages for runtime python2.6... INFO: using unknown version '/usr/bin/python2.6' (debian_defaults not up-to-date?) ... So it looks like python did link/byte compile but for some reason the pymol stuff did not get linked. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
I looked a bit more and the chain of events in the log is: 1. python2.6-minimal gets install and calls rtinstall scripts - at this point python2.6 is not yet marked as supported in /usr/share/python/debian_defaults 2. new python-support gets installed and links for all supported runtimes 3. pymol gets unpacked 4. python-minimal gets installed, now python2.6 is supported and that triggers python-support to byte-compile again 5. pymol gets configured Now if the links are missing somewhere here is a bug that is not yet fixed. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
I was not able to reprouce the failure here with a normal upgrade test, but I get (line number from my upgrade in the brackets): - python-support (326) - pymol (368) - python2.6-minmal (376) - python-minimal (382) So I suspect the problem is order dependant. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
After reading the report again it turns out the problem is python-pmw that triggers python-central bug #357884 - this got fixed afterwards but its a problem for people who upgraded with the RC (the binary got published at the 17.04). -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
It only affects people who upgraded to RC (or before) and only python package that have no new version between intrepid-jaunty and use python-central -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
** Attachment added: list of packages possible affected (88 pkgs) http://launchpadlibrarian.net/25892058/lala -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
Running pycentral rtinstall python2.6 again does also fix the problem of course. Doing that automatically is a bit tricky, but we could just run it for everyone again -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
Re: [Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
I think if that would fix it we should do it. I do recall that for the python-qt-dbus (or dbus-qt, I can never remember) bug that led to the python-central fix , I tried that and it didn't fix it. Was there something unique about that package that caused that packed not to get fixed and are there other packages in that catagory? I have a vague recollection that it's paths were somewhat odd because the Debian maintainer had started work moving the package to python-support. I think we ought to update the release note now and consider running it for everyone once we know if covers all cases. If we are going to run a 'fix' for everyone we ought to make sure it's comprehensive first so we only do it once. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
Documented at https://wiki.ubuntu.com/JauntyJackalope/ReleaseNotes#python ImportError with systems upgraded before Ubuntu 9.04 release candidate: A bug in the python packages present in jaunty prior to the Ubuntu 9.04 release candidate caused python modules to fail to be registered for use with the current python version, python 2.6. This problem appears as an import error, e.g: ImportError: No module named foo even though the package providing the module package is installed. To correct this, run the command: sudo dpkg-reconfigure python-foo for each python-foo package providing an affected module. ** Changed in: ubuntu-release-notes Status: Triaged = Fix Released -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
Thanks for your bugreport. Could you please attach /var/log/dist-upgrade/* and /var/log/apt/term.log ? I would like to diagnose this a bit more to see if I can figure out how broad the scope of the problem is. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
** Attachment added: dist-upgrade.tar http://launchpadlibrarian.net/25862820/dist-upgrade.tar -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
** Attachment added: term.log http://launchpadlibrarian.net/25862873/term.log -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
It is weird it only imports Pmw to python2.5. I have python-pmw 1.3.2-3 installed. Pymol worked fine even yesterday morning with the jaunty RC, there were a couple of python upgrades since then. I try reinstalling python-pmw maybe it helps. pippi:~/wd/btp003/figures python Python 2.6.2 (release26-maint, Apr 19 2009, 01:56:41) [GCC 4.3.3] on linux2 Type help, copyright, credits or license for more information. import Pmw Traceback (most recent call last): File stdin, line 1, in module ImportError: No module named Pmw pippi:~/wd/btp003/figures python2.5 Python 2.5.4 (r254:67916, Apr 4 2009, 17:55:16) [GCC 4.3.3] on linux2 Type help, copyright, credits or license for more information. import Pmw pippi:~/wd/btp003/figures python2.4 python2.4: Command not found. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
Reinstalling python-pmw solved the problem. Thank you for the help. -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
** Changed in: pymol (Ubuntu) Status: New = Fix Released -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 364608] Re: pymol menu bar does not show up after upgrade to jaunty
notes on getting this release-noted, from IRC: 17:30 ScottK The issue was the upgrade of the package happening before python2.6 had turned into a supported version, so the module didn't get symlinked for 2.6. 17:31 ScottK I suspect (but cannot prove) that an indeterminate number of people who upgraded before the fix have an indeterminate number of broken python packages. 17:32 ScottK Caveated to people who upgraded before RC. 17:34 slangasek should dpkg-reconfigure do the job? (calls the postinst, saves a download) 17:36 ScottK I'm not sure. Most of the symlink magic is done in postinst, so it should. 17:37 ScottK The thing to key off of is ImportError: No module named Pmw so in the release note we can say if the error is ImportError: No module named foo then reconfigure/reinstall python-foo. 17:37 ScottK Dunno if that's too complex or not, but it may save us some bugs and users some frustrations. 17:38 ScottK Given that the problem should be limited to people that upgraded pre-RC they should in theory be able to deal with it. ** Also affects: ubuntu-release-notes Importance: Undecided Status: New ** Changed in: ubuntu-release-notes Importance: Undecided = Medium ** Changed in: ubuntu-release-notes Status: New = Triaged -- pymol menu bar does not show up after upgrade to jaunty https://bugs.launchpad.net/bugs/364608 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
