This bug went away by synaptic 0.62.5ubuntu3 (now in jaunty-updates),
which has this changely entry.

synaptic (0.62.5ubuntu3) jaunty-proposed; urgency=low

  * improve the logic when the xapian index needs
    rebuilding by checking the xapian document count
    against the available packages (LP: #365151)

 -- Michael Vogt <michael.v...@ubuntu.com>  Fri, 17 Apr 2009 16:14:30
+0200


** Changed in: synaptic (Ubuntu)
       Status: New => Fix Released

-- 
package data out of date as normal user
https://bugs.launchpad.net/bugs/417541
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