[jira] Created: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
DescEditor plugin exception with GNU libgcj 4.1.2 - Key: UIMA-545 URL: https://issues.apache.org/jira/browse/UIMA-545 Project: UIMA Issue Type: Bug Components: Eclipse plugins Affects Versions: 2.2 Environment: eclipse.buildId=M20070212-1330 java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB Reporter: julien nioche The DescEditor plugin throws this exception when Eclipse is used with GNU libgcj. The plugin works fine when changing to the java-6-sun implementation. --- !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 !MESSAGE java.lang.ExceptionInInitializerError !STACK 0 java.lang.ExceptionInInitializerError at java.lang.Class.initializeClass(libgcj.so.70) at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) at org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) at org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) at org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) at org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) at org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) at org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) at org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) at org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) at org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) at java.lang.reflect.Method.invoke(libgcj.so.70) at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) at org.eclipse.core.launcher.Main.basicRun(Main.java:280) at org.eclipse.core.launcher.Main.run(Main.java:977) at org.eclipse.core.launcher.Main.main(Main.java:952) Caused by: java.lang.ClassCastException: gnu.xml.transform.TransformerFactoryImpl cannot be cast to javax.xml.transform.sax.SAXTransformerFactory at org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) at java.lang.Class.initializeClass(libgcj.so.70) ...37 more !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 !MESSAGE Unhandled event loop exception !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl !STACK 0 java.lang.NoClassDefFoundError: org.apache.uima.util.impl.SaxDeserializer_impl at java.lang.Class.initializeClass(libgcj.so.70) at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) at org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) at org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) at org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) at org.eclipse.ui.internal.Ed
[jira] Updated: (UIMA-537) Cas Editor: Imports do not work in descriptor files
[ https://issues.apache.org/jira/browse/UIMA-537?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jörn Kottmann updated UIMA-537: --- Attachment: UIMA-537.patch > Cas Editor: Imports do not work in descriptor files > --- > > Key: UIMA-537 > URL: https://issues.apache.org/jira/browse/UIMA-537 > Project: UIMA > Issue Type: Bug > Components: Sandbox >Reporter: Jörn Kottmann >Assignee: Jörn Kottmann >Priority: Minor > Attachments: UIMA-537.patch > > > The import is searched in the wrong location. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Created: (UIMA-546) Refactor Cas Editor source code
Refactor Cas Editor source code --- Key: UIMA-546 URL: https://issues.apache.org/jira/browse/UIMA-546 Project: UIMA Issue Type: Task Components: Sandbox Reporter: Jörn Kottmann Assignee: Jörn Kottmann - All warnings should be removed - All finbugs warnings should be removed - Ensure that all code is formated according to the uima guidelines - Run the eclipse clean up wizard -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Commented: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
[ https://issues.apache.org/jira/browse/UIMA-545?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#action_12522407 ] Thilo Goetz commented on UIMA-545: -- Looks to me like you found a bug in the GNU XML library, wouldn't you say? I don't think there's anything we can do about this. > DescEditor plugin exception with GNU libgcj 4.1.2 > - > > Key: UIMA-545 > URL: https://issues.apache.org/jira/browse/UIMA-545 > Project: UIMA > Issue Type: Bug > Components: Eclipse plugins >Affects Versions: 2.2 > Environment: eclipse.buildId=M20070212-1330 > java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) > BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB >Reporter: julien nioche > > The DescEditor plugin throws this exception when Eclipse is used with GNU > libgcj. The plugin works fine when changing to the java-6-sun implementation. > --- > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 > !MESSAGE java.lang.ExceptionInInitializerError > !STACK 0 > java.lang.ExceptionInInitializerError >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) >at > org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) >at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) >at > org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) >at > org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) >at > org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) >at > org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) >at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) >at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) >at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) >at > org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) >at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) >at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) >at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) >at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) >at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) >at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) >at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) >at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) >at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) >at > org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) >at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) >at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) >at > org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) >at java.lang.reflect.Method.invoke(libgcj.so.70) >at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) >at org.eclipse.core.launcher.Main.basicRun(Main.java:280) >at org.eclipse.core.launcher.Main.run(Main.java:977) >at org.eclipse.core.launcher.Main.main(Main.java:952) > Caused by: java.lang.ClassCastException: > gnu.xml.transform.TransformerFactoryImpl cannot be cast to > javax.xml.transform.sax.SAXTransformerFactory >at > org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) >at java.lang.Class.initializeClass(libgcj.so.70) >...37 more > !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 > !MESSAGE Unhandled event loop exception > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 > !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl > !STACK 0 > java.lang.NoClassDefFoundError: org.apache.uima.util.impl.SaxDeserializer_impl >at java.lang.Class.initialize
[jira] Commented: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
[ https://issues.apache.org/jira/browse/UIMA-545?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#action_12522425 ] julien nioche commented on UIMA-545: Could add a short comment about using the sun jvm in the documentation maybe? libgcj is the default choice for Eclipse in Ubuntu - I imagine that other people might have the same problem > DescEditor plugin exception with GNU libgcj 4.1.2 > - > > Key: UIMA-545 > URL: https://issues.apache.org/jira/browse/UIMA-545 > Project: UIMA > Issue Type: Bug > Components: Eclipse plugins >Affects Versions: 2.2 > Environment: eclipse.buildId=M20070212-1330 > java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) > BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB >Reporter: julien nioche > > The DescEditor plugin throws this exception when Eclipse is used with GNU > libgcj. The plugin works fine when changing to the java-6-sun implementation. > --- > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 > !MESSAGE java.lang.ExceptionInInitializerError > !STACK 0 > java.lang.ExceptionInInitializerError >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) >at > org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) >at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) >at > org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) >at > org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) >at > org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) >at > org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) >at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) >at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) >at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) >at > org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) >at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) >at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) >at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) >at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) >at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) >at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) >at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) >at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) >at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) >at > org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) >at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) >at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) >at > org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) >at java.lang.reflect.Method.invoke(libgcj.so.70) >at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) >at org.eclipse.core.launcher.Main.basicRun(Main.java:280) >at org.eclipse.core.launcher.Main.run(Main.java:977) >at org.eclipse.core.launcher.Main.main(Main.java:952) > Caused by: java.lang.ClassCastException: > gnu.xml.transform.TransformerFactoryImpl cannot be cast to > javax.xml.transform.sax.SAXTransformerFactory >at > org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) >at java.lang.Class.initializeClass(libgcj.so.70) >...37 more > !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 > !MESSAGE Unhandled event loop exception > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 > !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl > !STACK 0 > java.lang.NoClassDefFoundError: org.apache.uima.uti
[jira] Updated: (UIMA-371) XMI serialization to UIMA C++
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Bhavani Iyer updated UIMA-371: -- Attachment: UIMA-371-1.patch Fix for memory leak in XmiSerializationSharedData. The destructor was not deleting vector of OOTS array elements. > XMI serialization to UIMA C++ > - > > Key: UIMA-371 > URL: https://issues.apache.org/jira/browse/UIMA-371 > Project: UIMA > Issue Type: New Feature > Components: C++ Framework >Reporter: Eddie Epstein >Assignee: Eddie Epstein > Fix For: 2.2C > > Attachments: UIMA-371-1.patch, UIMA-371.patch, uimacpp-xmi.patch, > uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch > > > In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been > working on XMI serialization support for UIMA C++. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Assigned: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
[ https://issues.apache.org/jira/browse/UIMA-545?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thilo Goetz reassigned UIMA-545: Assignee: Thilo Goetz > DescEditor plugin exception with GNU libgcj 4.1.2 > - > > Key: UIMA-545 > URL: https://issues.apache.org/jira/browse/UIMA-545 > Project: UIMA > Issue Type: Bug > Components: Eclipse plugins >Affects Versions: 2.2 > Environment: eclipse.buildId=M20070212-1330 > java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) > BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB >Reporter: julien nioche >Assignee: Thilo Goetz > > The DescEditor plugin throws this exception when Eclipse is used with GNU > libgcj. The plugin works fine when changing to the java-6-sun implementation. > --- > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 > !MESSAGE java.lang.ExceptionInInitializerError > !STACK 0 > java.lang.ExceptionInInitializerError >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) >at > org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) >at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) >at > org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) >at > org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) >at > org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) >at > org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) >at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) >at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) >at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) >at > org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) >at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) >at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) >at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) >at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) >at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) >at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) >at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) >at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) >at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) >at > org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) >at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) >at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) >at > org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) >at java.lang.reflect.Method.invoke(libgcj.so.70) >at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) >at org.eclipse.core.launcher.Main.basicRun(Main.java:280) >at org.eclipse.core.launcher.Main.run(Main.java:977) >at org.eclipse.core.launcher.Main.main(Main.java:952) > Caused by: java.lang.ClassCastException: > gnu.xml.transform.TransformerFactoryImpl cannot be cast to > javax.xml.transform.sax.SAXTransformerFactory >at > org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) >at java.lang.Class.initializeClass(libgcj.so.70) >...37 more > !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 > !MESSAGE Unhandled event loop exception > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 > !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl > !STACK 0 > java.lang.NoClassDefFoundError: org.apache.uima.util.impl.SaxDeserializer_impl >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java
[jira] Updated: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
[ https://issues.apache.org/jira/browse/UIMA-545?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thilo Goetz updated UIMA-545: - Component/s: (was: Eclipse plugins) Documentation Fix Version/s: 2.3 Good point, I will add this to the "known issues" section. > DescEditor plugin exception with GNU libgcj 4.1.2 > - > > Key: UIMA-545 > URL: https://issues.apache.org/jira/browse/UIMA-545 > Project: UIMA > Issue Type: Bug > Components: Documentation >Affects Versions: 2.2 > Environment: eclipse.buildId=M20070212-1330 > java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) > BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB >Reporter: julien nioche >Assignee: Thilo Goetz > Fix For: 2.3 > > > The DescEditor plugin throws this exception when Eclipse is used with GNU > libgcj. The plugin works fine when changing to the java-6-sun implementation. > --- > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 > !MESSAGE java.lang.ExceptionInInitializerError > !STACK 0 > java.lang.ExceptionInInitializerError >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) >at > org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) >at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) >at > org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) >at > org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) >at > org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) >at > org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) >at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) >at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) >at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) >at > org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) >at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) >at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) >at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) >at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) >at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) >at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) >at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) >at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) >at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) >at > org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) >at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) >at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) >at > org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) >at java.lang.reflect.Method.invoke(libgcj.so.70) >at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) >at org.eclipse.core.launcher.Main.basicRun(Main.java:280) >at org.eclipse.core.launcher.Main.run(Main.java:977) >at org.eclipse.core.launcher.Main.main(Main.java:952) > Caused by: java.lang.ClassCastException: > gnu.xml.transform.TransformerFactoryImpl cannot be cast to > javax.xml.transform.sax.SAXTransformerFactory >at > org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) >at java.lang.Class.initializeClass(libgcj.so.70) >...37 more > !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 > !MESSAGE Unhandled event loop exception > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 > !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl > !STACK 0 > java.lang.NoClassDefFoundError: org.apache.uima.ut
[jira] Resolved: (UIMA-371) XMI serialization to UIMA C++
[ https://issues.apache.org/jira/browse/UIMA-371?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Eddie Epstein resolved UIMA-371. Resolution: Fixed Looks good. Thanks Bhavani. > XMI serialization to UIMA C++ > - > > Key: UIMA-371 > URL: https://issues.apache.org/jira/browse/UIMA-371 > Project: UIMA > Issue Type: New Feature > Components: C++ Framework >Reporter: Eddie Epstein >Assignee: Eddie Epstein > Fix For: 2.2C > > Attachments: UIMA-371-1.patch, UIMA-371.patch, uimacpp-xmi.patch, > uimacpp_xmi.patch, uimacpp_xmi.zip, xmi_bytearray.patch > > > In order to comply to the UIMA standard for CAS data, Bhavani Iyer has been > working on XMI serialization support for UIMA C++. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Closed: (UIMA-545) DescEditor plugin exception with GNU libgcj 4.1.2
[ https://issues.apache.org/jira/browse/UIMA-545?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Thilo Goetz closed UIMA-545. Resolution: Fixed Added issue to "Known issues" section of docs. Also added known issues to FAQ of website. > DescEditor plugin exception with GNU libgcj 4.1.2 > - > > Key: UIMA-545 > URL: https://issues.apache.org/jira/browse/UIMA-545 > Project: UIMA > Issue Type: Bug > Components: Documentation >Affects Versions: 2.2 > Environment: eclipse.buildId=M20070212-1330 > java.fullversion=GNU libgcj 4.1.2 (Ubuntu 4.1.2-0ubuntu5) > BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_GB >Reporter: julien nioche >Assignee: Thilo Goetz > Fix For: 2.3 > > > The DescEditor plugin throws this exception when Eclipse is used with GNU > libgcj. The plugin works fine when changing to the java-6-sun implementation. > --- > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:56.109 > !MESSAGE java.lang.ExceptionInInitializerError > !STACK 0 > java.lang.ExceptionInInitializerError >at java.lang.Class.initializeClass(libgcj.so.70) >at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:174) >at > org.apache.uima.taeconfigurator.editors.ui.AbstractSection.parseDescriptor(AbstractSection.java:1411) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.parseSource(MultiPageEditor.java:816) >at > org.apache.uima.taeconfigurator.editors.MultiPageEditor.init(MultiPageEditor.java:799) >at org.eclipse.ui.internal.EditorManager.createSite(EditorManager.java:842) >at > org.eclipse.ui.internal.EditorReference.createPartHelper(EditorReference.java:583) >at > org.eclipse.ui.internal.EditorReference.createPart(EditorReference.java:372) >at > org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:566) >at > org.eclipse.ui.internal.EditorReference.getEditor(EditorReference.java:214) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditorBatched(WorkbenchPage.java:2595) >at > org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:2528) >at org.eclipse.ui.internal.WorkbenchPage.access$10(WorkbenchPage.java:2520) >at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:2505) >at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:67) >at > org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:2500) >at org.eclipse.ui.actions.OpenWithMenu.openEditor(OpenWithMenu.java:288) >at org.eclipse.ui.actions.OpenWithMenu.access$0(OpenWithMenu.java:280) >at org.eclipse.ui.actions.OpenWithMenu$2.handleEvent(OpenWithMenu.java:184) >at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:66) >at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1085) >at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3180) >at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2856) >at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:1930) >at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:1894) >at > org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:422) >at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) >at org.eclipse.ui.internal.ide.IDEApplication.run(IDEApplication.java:95) >at > org.eclipse.core.internal.runtime.PlatformActivator$1.run(PlatformActivator.java:78) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:92) >at > org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:68) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:400) >at > org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:177) >at java.lang.reflect.Method.invoke(libgcj.so.70) >at org.eclipse.core.launcher.Main.invokeFramework(Main.java:336) >at org.eclipse.core.launcher.Main.basicRun(Main.java:280) >at org.eclipse.core.launcher.Main.run(Main.java:977) >at org.eclipse.core.launcher.Main.main(Main.java:952) > Caused by: java.lang.ClassCastException: > gnu.xml.transform.TransformerFactoryImpl cannot be cast to > javax.xml.transform.sax.SAXTransformerFactory >at > org.apache.uima.util.impl.SaxDeserializer_impl.(SaxDeserializer_impl.java:53) >at java.lang.Class.initializeClass(libgcj.so.70) >...37 more > !ENTRY org.eclipse.ui 4 4 2007-08-24 07:49:57.389 > !MESSAGE Unhandled event loop exception > !ENTRY org.eclipse.ui 4 0 2007-08-24 07:49:57.390 > !MESSAGE org.apache.uima.util.impl.SaxDeserializer_impl > !STACK 0 > java.lang.NoClassDefFoundError: org.apache.uima.util.impl.SaxDeserializer_impl >at java.lang.C
[jira] Created: (UIMA-547) XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized
XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized --- Key: UIMA-547 URL: https://issues.apache.org/jira/browse/UIMA-547 Project: UIMA Issue Type: Bug Components: Core Java Framework Affects Versions: 2.2 Reporter: Adam Lally Assignee: Adam Lally Fix For: 2.3 If the JCAS has been initialized, subsequently attempting to deserialize an XMI CAS containing an array will fail with an error message such as: java.lang.ClassCastException: org.apache.uima.jcas.cas.StringArray cannot be cast to org.apache.uima.cas.impl.FeatureStructureImplC The XmiCasDeserializer is incorrectly trying to typecast to FeatureStructureImplC, which is the implementation class used only in non-JCAS scenarios. It is surprising we did not see this before. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Commented: (UIMA-547) XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized
[ https://issues.apache.org/jira/browse/UIMA-547?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#action_12522568 ] Adam Lally commented on UIMA-547: - Also looks like it could affect XCAS deserialization for certain array types (boolean,short,long,double). > XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized > --- > > Key: UIMA-547 > URL: https://issues.apache.org/jira/browse/UIMA-547 > Project: UIMA > Issue Type: Bug > Components: Core Java Framework >Affects Versions: 2.2 >Reporter: Adam Lally >Assignee: Adam Lally > Fix For: 2.3 > > > If the JCAS has been initialized, subsequently attempting to deserialize an > XMI CAS containing an array will fail with an error message such as: > java.lang.ClassCastException: org.apache.uima.jcas.cas.StringArray cannot be > cast to org.apache.uima.cas.impl.FeatureStructureImplC > The XmiCasDeserializer is incorrectly trying to typecast to > FeatureStructureImplC, which is the implementation class used only in > non-JCAS scenarios. It is surprising we did not see this before. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Closed: (UIMA-547) XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized
[ https://issues.apache.org/jira/browse/UIMA-547?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Adam Lally closed UIMA-547. --- Resolution: Fixed > XmiCasDeserializer fails to deserialize arrays if JCAS has been initialized > --- > > Key: UIMA-547 > URL: https://issues.apache.org/jira/browse/UIMA-547 > Project: UIMA > Issue Type: Bug > Components: Core Java Framework >Affects Versions: 2.2 >Reporter: Adam Lally >Assignee: Adam Lally > Fix For: 2.3 > > > If the JCAS has been initialized, subsequently attempting to deserialize an > XMI CAS containing an array will fail with an error message such as: > java.lang.ClassCastException: org.apache.uima.jcas.cas.StringArray cannot be > cast to org.apache.uima.cas.impl.FeatureStructureImplC > The XmiCasDeserializer is incorrectly trying to typecast to > FeatureStructureImplC, which is the implementation class used only in > non-JCAS scenarios. It is surprising we did not see this before. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
