[jira] Created: (UIMA-1603) Missing doc describing service spec syntax
Missing doc describing service spec syntax -- Key: UIMA-1603 URL: https://issues.apache.org/jira/browse/UIMA-1603 Project: UIMA Issue Type: Improvement Components: Sandbox-SimpleServer Affects Versions: 2.2.2 Reporter: Olivier Terrier Priority: Minor The SimpleServer is a great contribution, unfortunately, the documentation is quite incomplete. In particular there is now (even basic) guidelines on how to write a result spec xml file to customize the output. Even a simple readme file would be of great help -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1065) CFE - configurable feature extrator for UIMA annotation comparison, evaluation, testing, generation of machine learning features
[ https://issues.apache.org/jira/browse/UIMA-1065?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Igor Sominsky updated UIMA-1065: Attachment: CFE-patch-20091004.txt More FindBug related changes > CFE - configurable feature extrator for UIMA annotation comparison, > evaluation, testing, generation of machine learning features > > > Key: UIMA-1065 > URL: https://issues.apache.org/jira/browse/UIMA-1065 > Project: UIMA > Issue Type: New Feature > Components: Tools >Reporter: Igor Sominsky >Assignee: Marshall Schor >Priority: Minor > Attachments: CFE-20080908.zip, CFE-20080908.zip.md5, > CFE-patch-20090827.txt, CFE-patch-20090828.txt, CFE-patch-20090930.txt, > CFE-patch-20091002.txt, CFE-patch-20091004.txt, CFE_sominsky-A4.pdf, > CFE_UG-images.zip, CFE_UG-patch-20091008.txt, CFE_UG_v9.pdf, images.zip > > > CFE - configurable feature extrator for UIMA annotation comparison, > evaluation of performance metrics such as precision/recall/f-score, > regression testing, generation of machine learning features. It provides > Feature Extraction Specification language (FESL), that specifies rules for > feature extraction. The criteria for the extraction could be customized by > multiple conditions written in FESL in normal disjunctive form. Extracted > features can be output into a file or CAS. Extractor can be implemented as > CAS consumer of TAE -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Created: (UIMA-1604) Add ShutdownHook to Uima As Service Wrapper
Add ShutdownHook to Uima As Service Wrapper --- Key: UIMA-1604 URL: https://issues.apache.org/jira/browse/UIMA-1604 Project: UIMA Issue Type: New Feature Components: Async Scaleout Affects Versions: 2.3AS Reporter: Jerry Cwiklik Assignee: Jerry Cwiklik Uima AS service should implement a ShutdownHook to enable cleanup when the service is killed via kill command. The action taken by the shutdown hook should be quiesce and stop. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Created: (UIMA-1605) Fixed Findbugs issues
Fixed Findbugs issues - Key: UIMA-1605 URL: https://issues.apache.org/jira/browse/UIMA-1605 Project: UIMA Issue Type: Bug Components: Sandbox-ConceptMapper Reporter: Michael Tanenblatt Priority: Minor Attachments: patch20091009.txt Corrected a few issues discovered by Findbugs. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1605) Fixed Findbugs issues
[ https://issues.apache.org/jira/browse/UIMA-1605?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Tanenblatt updated UIMA-1605: - Attachment: patch20091009.txt > Fixed Findbugs issues > - > > Key: UIMA-1605 > URL: https://issues.apache.org/jira/browse/UIMA-1605 > Project: UIMA > Issue Type: Bug > Components: Sandbox-ConceptMapper >Reporter: Michael Tanenblatt >Priority: Minor > Attachments: patch20091009.txt > > > Corrected a few issues discovered by Findbugs. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Closed: (UIMA-1604) Add ShutdownHook to Uima As Service Wrapper
[ https://issues.apache.org/jira/browse/UIMA-1604?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jerry Cwiklik closed UIMA-1604. --- Resolution: Fixed Instrumented UIMA_Service with ShutdownHook to run quiesce and stop on kill signal > Add ShutdownHook to Uima As Service Wrapper > --- > > Key: UIMA-1604 > URL: https://issues.apache.org/jira/browse/UIMA-1604 > Project: UIMA > Issue Type: New Feature > Components: Async Scaleout >Affects Versions: 2.3AS >Reporter: Jerry Cwiklik >Assignee: Jerry Cwiklik > > Uima AS service should implement a ShutdownHook to enable cleanup when the > service is killed via kill command. The action taken by the shutdown hook > should be quiesce and stop. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Commented: (UIMA-1448) Add generics to LinearTypeOrderBuilderImpl
[ https://issues.apache.org/jira/browse/UIMA-1448?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12764037#action_12764037 ] Jörn Kottmann commented on UIMA-1448: - The generification was done under UIMA-1452. > Add generics to LinearTypeOrderBuilderImpl > -- > > Key: UIMA-1448 > URL: https://issues.apache.org/jira/browse/UIMA-1448 > Project: UIMA > Issue Type: Improvement > Components: Core Java Framework >Reporter: Jörn Kottmann >Priority: Trivial > > The class LinearTypeOrderBuilderImpl should be re-factored to use generics > and checked for correct class casting. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1601) moveTo() and iterator(fs) do not point to "leftmost" FS
[ https://issues.apache.org/jira/browse/UIMA-1601?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor updated UIMA-1601: - Affects Version/s: (was: 2.2.2) 2.3 Defer past 2.3.0 release > moveTo() and iterator(fs) do not point to "leftmost" FS > --- > > Key: UIMA-1601 > URL: https://issues.apache.org/jira/browse/UIMA-1601 > Project: UIMA > Issue Type: Bug > Components: Core Java Framework >Affects Versions: 2.3 >Reporter: Timo Boehme > > According to the API docs FSIterator.moveTo(FeatureStructure fs) should move > the iterator to "the first features structure that is equal to fs". In case > we have multiple annotations of same type and same region (same start/end) as > fs moveTo() will point to one of them but not necessarily to the first > (leftmost) one (in iterator order). > The inconsistency to the API doc is even more clear with > FSIndex.iterator(FeatureStructure fs). The API doc states: "The position of > the iterator will be set such that the feature structure returned by a call > to the iterator's get() method is greater than or equal to fs, and any > previous FS is less than FS." Thus if we have multiple annotations of same > type as fs and same region one would expect the iterator to start with the > left most one and return all of these annotations using next(). However as > with moveTo() this is not the case. E.g. after iterator creation calling > moveToPrevious() followed by get() returns sometimes one of the annotations > with same region as fs (and same type). -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Assigned: (UIMA-1605) Fixed Findbugs issues
[ https://issues.apache.org/jira/browse/UIMA-1605?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor reassigned UIMA-1605: Assignee: Marshall Schor > Fixed Findbugs issues > - > > Key: UIMA-1605 > URL: https://issues.apache.org/jira/browse/UIMA-1605 > Project: UIMA > Issue Type: Bug > Components: Sandbox-ConceptMapper >Reporter: Michael Tanenblatt >Assignee: Marshall Schor >Priority: Minor > Attachments: patch20091009.txt > > > Corrected a few issues discovered by Findbugs. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
Re: [jira] Created: (UIMA-1603) Missing doc describing service spec syntax
Thilo - I think you're probably the best one to add this doc; is this something you can do shortly to include in 2.3.0 or should I defer this past 2.3.0 release? -Marshall Olivier Terrier (JIRA) wrote: > Missing doc describing service spec syntax > -- > > Key: UIMA-1603 > URL: https://issues.apache.org/jira/browse/UIMA-1603 > Project: UIMA > Issue Type: Improvement > Components: Sandbox-SimpleServer > Affects Versions: 2.2.2 > Reporter: Olivier Terrier > Priority: Minor > > > The SimpleServer is a great contribution, unfortunately, the documentation is > quite incomplete. > In particular there is now (even basic) guidelines on how to write a result > spec xml file to customize the output. > Even a simple readme file would be of great help > > >
Re: [jira] Commented: (UIMA-1448) Add generics to LinearTypeOrderBuilderImpl
OK - I see 1452 is closed; can you close 1448? -Marshall Jörn Kottmann (JIRA) wrote: > [ > https://issues.apache.org/jira/browse/UIMA-1448?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12764037#action_12764037 > ] > > Jörn Kottmann commented on UIMA-1448: > - > > The generification was done under UIMA-1452. > > >> Add generics to LinearTypeOrderBuilderImpl >> -- >> >> Key: UIMA-1448 >> URL: https://issues.apache.org/jira/browse/UIMA-1448 >> Project: UIMA >> Issue Type: Improvement >> Components: Core Java Framework >>Reporter: Jörn Kottmann >>Priority: Trivial >> >> The class LinearTypeOrderBuilderImpl should be re-factored to use generics >> and checked for correct class casting. >> > >
Re: [jira] Created: (UIMA-1603) Missing doc describing service spec syntax
Marshall Schor wrote: > Thilo - I think you're probably the best one to add this doc; is this > something you can do shortly to include in 2.3.0 or should I defer this > past 2.3.0 release? I don't think I'll be able to work on this immediately, so let's please defer this till after the 2.3 release. --Thilo > > -Marshall > > Olivier Terrier (JIRA) wrote: >> Missing doc describing service spec syntax >> -- >> >> Key: UIMA-1603 >> URL: https://issues.apache.org/jira/browse/UIMA-1603 >> Project: UIMA >> Issue Type: Improvement >> Components: Sandbox-SimpleServer >> Affects Versions: 2.2.2 >> Reporter: Olivier Terrier >> Priority: Minor >> >> >> The SimpleServer is a great contribution, unfortunately, the documentation >> is quite incomplete. >> In particular there is now (even basic) guidelines on how to write a result >> spec xml file to customize the output. >> Even a simple readme file would be of great help >> >> >>
[jira] Closed: (UIMA-1448) Add generics to LinearTypeOrderBuilderImpl
[ https://issues.apache.org/jira/browse/UIMA-1448?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jörn Kottmann closed UIMA-1448. --- Resolution: Fixed Fix Version/s: 2.3 Assignee: Jörn Kottmann > Add generics to LinearTypeOrderBuilderImpl > -- > > Key: UIMA-1448 > URL: https://issues.apache.org/jira/browse/UIMA-1448 > Project: UIMA > Issue Type: Improvement > Components: Core Java Framework >Reporter: Jörn Kottmann >Assignee: Jörn Kottmann >Priority: Trivial > Fix For: 2.3 > > > The class LinearTypeOrderBuilderImpl should be re-factored to use generics > and checked for correct class casting. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1605) Fixed Findbugs issues
[ https://issues.apache.org/jira/browse/UIMA-1605?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Michael Tanenblatt updated UIMA-1605: - Attachment: patch20091009-corrected.txt Corrected patch file (?) > Fixed Findbugs issues > - > > Key: UIMA-1605 > URL: https://issues.apache.org/jira/browse/UIMA-1605 > Project: UIMA > Issue Type: Bug > Components: Sandbox-ConceptMapper >Reporter: Michael Tanenblatt >Assignee: Marshall Schor >Priority: Minor > Attachments: patch20091009-corrected.txt, patch20091009.txt > > > Corrected a few issues discovered by Findbugs. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
Re: [jira] Closed: (UIMA-1604) Add ShutdownHook to Uima As Service Wrapper
Jerry Cwiklik (JIRA) wrote: [ https://issues.apache.org/jira/browse/UIMA-1604?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Jerry Cwiklik closed UIMA-1604. --- Resolution: Fixed Instrumented UIMA_Service with ShutdownHook to run quiesce and stop on kill signal Thanks Jerry, that makes things easier for me. Jörn
[jira] Closed: (UIMA-1605) Fixed Findbugs issues
[ https://issues.apache.org/jira/browse/UIMA-1605?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor closed UIMA-1605. Resolution: Fixed Fix Version/s: 2.3S > Fixed Findbugs issues > - > > Key: UIMA-1605 > URL: https://issues.apache.org/jira/browse/UIMA-1605 > Project: UIMA > Issue Type: Bug > Components: Sandbox-ConceptMapper >Reporter: Michael Tanenblatt >Assignee: Marshall Schor >Priority: Minor > Fix For: 2.3S > > Attachments: patch20091009-corrected.txt, patch20091009.txt > > > Corrected a few issues discovered by Findbugs. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Assigned: (UIMA-1606) On eclipse 3.3.1.1 package not automatically added to the list of imported packages
[ https://issues.apache.org/jira/browse/UIMA-1606?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor reassigned UIMA-1606: Assignee: Marshall Schor (was: Bhavani Iyer) > On eclipse 3.3.1.1 package not automatically added to the list of imported > packages > - > > Key: UIMA-1606 > URL: https://issues.apache.org/jira/browse/UIMA-1606 > Project: UIMA > Issue Type: Bug > Components: Core Java Framework >Reporter: Bhavani Iyer >Assignee: Marshall Schor > Attachments: UIMA-1606.patch > > > When doing an eclipse build of uimaj-ep-jcasgen project, found the package > org.eclipse.jdt.core.jdom was not being automatically added to imported > package list although mvn install builds successfully. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1603) Missing doc describing service spec syntax
[ https://issues.apache.org/jira/browse/UIMA-1603?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor updated UIMA-1603: - Affects Version/s: (was: 2.2.2) 2.3S Defer past 2.3.0 release > Missing doc describing service spec syntax > -- > > Key: UIMA-1603 > URL: https://issues.apache.org/jira/browse/UIMA-1603 > Project: UIMA > Issue Type: Improvement > Components: Sandbox-SimpleServer >Affects Versions: 2.3S >Reporter: Olivier Terrier >Priority: Minor > > The SimpleServer is a great contribution, unfortunately, the documentation is > quite incomplete. > In particular there is now (even basic) guidelines on how to write a result > spec xml file to customize the output. > Even a simple readme file would be of great help -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Closed: (UIMA-1606) On eclipse 3.3.1.1 package not automatically added to the list of imported packages
[ https://issues.apache.org/jira/browse/UIMA-1606?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor closed UIMA-1606. Resolution: Fixed Fix Version/s: 2.3 > On eclipse 3.3.1.1 package not automatically added to the list of imported > packages > - > > Key: UIMA-1606 > URL: https://issues.apache.org/jira/browse/UIMA-1606 > Project: UIMA > Issue Type: Bug > Components: Core Java Framework >Reporter: Bhavani Iyer >Assignee: Marshall Schor > Fix For: 2.3 > > Attachments: UIMA-1606.patch > > > When doing an eclipse build of uimaj-ep-jcasgen project, found the package > org.eclipse.jdt.core.jdom was not being automatically added to imported > package list although mvn install builds successfully. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Updated: (UIMA-1515) Annotation type order should be consistent
[ https://issues.apache.org/jira/browse/UIMA-1515?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Marshall Schor updated UIMA-1515: - Affects Version/s: 2.3 > Annotation type order should be consistent > -- > > Key: UIMA-1515 > URL: https://issues.apache.org/jira/browse/UIMA-1515 > Project: UIMA > Issue Type: Improvement > Components: CasEditor >Affects Versions: 2.3 >Reporter: Jörn Kottmann >Assignee: Jörn Kottmann >Priority: Minor > > The annotation types should be ordered identical in the various places they > are shown, namely outline view, [SHIFT][ENTER] smart insert type dialog and > type choose lists. If possible it would be nice if the types can be ordered > as in the uima type system descriptor. -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Created: (UIMA-1607) Wrong log formatter used in uima-as
Wrong log formatter used in uima-as --- Key: UIMA-1607 URL: https://issues.apache.org/jira/browse/UIMA-1607 Project: UIMA Issue Type: Bug Components: Async Scaleout Affects Versions: 2.3 Reporter: Burn Lewis When running the uima-as test described in section 3.4 of the README, the uima.log is always produced in the xml format. The problem appears to be caused by the bootstrap jar as just before the service start it outputs: log4j:WARN No appenders could be found for logger (org.springframework.context.support.FileSystemXmlApplicationContext). log4j:WARN Please initialize the log4j system properly. Perhaps the bootstrap program needs to be in uima-core.jar so it can find the specified log formatter: org.apache.uima.internal.util.UIMALogFormatter -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
[jira] Commented: (UIMA-1607) Wrong log formatter used in uima-as
[ https://issues.apache.org/jira/browse/UIMA-1607?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12764224#action_12764224 ] Burn Lewis commented on UIMA-1607: -- I verified that the log is OK when using an old-style explicit classpath that exactly matches the one loaded by UimaBootstrap.jar ... so it's not caused by the order of loading. > Wrong log formatter used in uima-as > --- > > Key: UIMA-1607 > URL: https://issues.apache.org/jira/browse/UIMA-1607 > Project: UIMA > Issue Type: Bug > Components: Async Scaleout >Affects Versions: 2.3 >Reporter: Burn Lewis > > When running the uima-as test described in section 3.4 of the README, the > uima.log is always produced in the xml format. The problem appears to be > caused by the bootstrap jar as just before the service start it outputs: > log4j:WARN No appenders could be found for logger > (org.springframework.context.support.FileSystemXmlApplicationContext). > log4j:WARN Please initialize the log4j system properly. > Perhaps the bootstrap program needs to be in uima-core.jar so it can find the > specified log formatter: org.apache.uima.internal.util.UIMALogFormatter -- This message is automatically generated by JIRA. - You can reply to this email to add a comment to the issue online.
