Re: Spark 1.5.1 Dynamic Resource Allocation

2015-11-04 Thread tstewart
https://issues.apache.org/jira/browse/SPARK-10790

Changed to add minExecutors < initialExecutors < maxExecutors and that
works.

spark-shell --conf spark.dynamicAllocation.enabled=true --conf
spark.shuffle.service.enabled=true --conf
spark.dynamicAllocation.minExecutors=2 --conf
spark.dynamicAllocation.initialExecutors=4 --conf
spark.dynamicAllocation.maxExecutors=12 --conf
spark.dynamicAllocation.sustainedSchedulerBacklogTimeout=120 --conf
spark.dynamicAllocation.schedulerBacklogTimeout=300 --conf
spark.dynamicAllocation.executorIdleTimeout=60 --executor-memory 512m
--master yarn-client --queue default



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Spark 1.5.1 Dynamic Resource Allocation

2015-11-04 Thread tstewart
(apologies if this re-posts, having challenges with the various web front
ends to this mailing list) 

I am running the following command on a Hadoop cluster to launch Spark shell
with DRA:
spark-shell  --conf spark.dynamicAllocation.enabled=true --conf
spark.shuffle.service.enabled=true --conf
spark.dynamicAllocation.minExecutors=4 --conf
spark.dynamicAllocation.maxExecutors=12 --conf
spark.dynamicAllocation.sustainedSchedulerBacklogTimeout=120 --conf
spark.dynamicAllocation.schedulerBacklogTimeout=300 --conf
spark.dynamicAllocation.executorIdleTimeout=60 --executor-memory 512m
--master yarn-client --queue default

This is the code I'm running within the Spark Shell - just demo stuff from
teh web site.

import org.apache.spark.mllib.clustering.KMeans
import org.apache.spark.mllib.linalg.Vectors

// Load and parse the data
val data = sc.textFile("hdfs://ns/public/sample/kmeans_data.txt")

val parsedData = data.map(s => Vectors.dense(s.split('
').map(_.toDouble))).cache()

// Cluster the data into two classes using KMeans
val numClusters = 2
val numIterations = 20
val clusters = KMeans.train(parsedData, numClusters, numIterations)

This works fine on Spark 1.4.1 but is failing on Spark 1.5.1. Did something
change that I need to do differently for DRA on 1.5.1?

This is the error I am getting:
15/10/29 21:44:19 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources
15/10/29 21:44:34 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources
15/10/29 21:44:49 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources

That happens to be the same error you get if you haven't followed the steps
to enable DRA, however I have done those and as I said if I just flip to
Spark 1.4.1 on the same cluster it works with my YARN config.




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sparkR 1.5.1 batch yarn-client mode failing on daemon.R not found

2015-11-04 Thread tstewart
(apologies if this re-posts, having challenges with the various web front
ends to this mailing list)

I have the following script in a file named test.R:

library(SparkR)
sc <- sparkR.init(master="yarn-client")
sqlContext <- sparkRSQL.init(sc)
df <- createDataFrame(sqlContext, faithful)
showDF(df)
sparkR.stop()
q(save="no")

If I submit this with "sparkR test.R" or "R  CMD BATCH test.R" or "Rscript
test.R" it fails with this error:
15/10/29 08:08:49 INFO r.BufferedStreamThread: Fatal error: cannot open file
'/mnt/hdfs9/yarn/nm-local-dir/usercache/hadoop/appcache/application_1446058618330_0171/container_e805_1446058618330_0171_01_05/sparkr/SparkR/worker/daemon.R':
No such file or directory
15/10/29 08:08:59 ERROR executor.Executor: Exception in task 0.0 in stage
1.0 (TID 1)
java.net.SocketTimeoutException: Accept timed out


However, if I launch just an interactive sparkR shell and cut/paste those
commands - it runs fine.
It also runs fine on the same Hadoop cluster with Spark 1.4.1.
And, it runs fine from batch mode if I just use sparkR.init() and not
sparkR.init(master="yarn-client") 




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Spark 1.5.1 Dynamic Resource Allocation

2015-10-29 Thread tstewart
I am running the following command on a Hadoop cluster to launch Spark shell
with DRA:
spark-shell  --conf spark.dynamicAllocation.enabled=true --conf
spark.shuffle.service.enabled=true --conf
spark.dynamicAllocation.minExecutors=4 --conf
spark.dynamicAllocation.maxExecutors=12 --conf
spark.dynamicAllocation.sustainedSchedulerBacklogTimeout=120 --conf
spark.dynamicAllocation.schedulerBacklogTimeout=300 --conf
spark.dynamicAllocation.executorIdleTimeout=60 --executor-memory 512m
--master yarn-client --queue default

This is the code I'm running within the Spark Shell - just demo stuff from
teh web site.

import org.apache.spark.mllib.clustering.KMeans
import org.apache.spark.mllib.linalg.Vectors

// Load and parse the data
val data = sc.textFile("hdfs://ns/public/sample/kmeans_data.txt")

val parsedData = data.map(s => Vectors.dense(s.split('
').map(_.toDouble))).cache()

// Cluster the data into two classes using KMeans
val numClusters = 2
val numIterations = 20
val clusters = KMeans.train(parsedData, numClusters, numIterations)

This works fine on Spark 1.4.1 but is failing on Spark 1.5.1. Did something
change that I need to do differently for DRA on 1.5.1?

This is the error I am getting:
15/10/29 21:44:19 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources
15/10/29 21:44:34 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources
15/10/29 21:44:49 WARN YarnScheduler: Initial job has not accepted any
resources; check your cluster UI to ensure that workers are registered and
have sufficient resources

That happens to be the same error you get if you haven't followed the steps
to enable DRA, however I have done those and as I said if I just flip to
Spark 1.4.1 on the same cluster it works with my YARN config.





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sparkR 1.5.1 batch yarn-client mode failing on daemon.R not found

2015-10-29 Thread tstewart
I have the following script in a file named test.R:

library(SparkR)
sc <- sparkR.init(master="yarn-client")
sqlContext <- sparkRSQL.init(sc)
df <- createDataFrame(sqlContext, faithful)
showDF(df)
sparkR.stop()
q(save="no")

If I submit this with "sparkR test.R" or "R  CMD BATCH test.R" or "Rscript
test.R" it fails with this error:
15/10/29 08:08:49 INFO r.BufferedStreamThread: Fatal error: cannot open file
'/mnt/hdfs9/yarn/nm-local-dir/usercache/hadoop/appcache/application_1446058618330_0171/container_e805_1446058618330_0171_01_05/sparkr/SparkR/worker/daemon.R':
No such file or directory
15/10/29 08:08:59 ERROR executor.Executor: Exception in task 0.0 in stage
1.0 (TID 1)
java.net.SocketTimeoutException: Accept timed out


However, if I launch just an interactive sparkR shell and cut/paste those
commands - it runs fine.
It also runs fine on the same Hadoop cluster with Spark 1.4.1.
And, it runs fine from batch mode if I just use sparkR.init() and not
sparkR.init(master="yarn-client")



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