Re: spark-1.1.0-bin-hadoop2.4 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

2014-09-18 Thread Andy Davidson
After lots of hacking I figure out how to resolve this problem. This is good
solution. It severalty cripples jackson but at least for now I am unblocked

1) turn off annotations.
mapper.configure(Feature.USE_ANNOTATIONS, false);


2) in maven set the jackson dependencies as provided.

properties

jackson.version1.9.13/jackson.version !-- 1.8.8 1.9.13 2.3.4-Final --

/properties



dependencies

dependency

groupIdorg.codehaus.jackson/groupId

artifactIdjackson-core-asl/artifactId

scopeprovided/scope

version${jackson.version}/version

/dependency

dependency

groupIdorg.codehaus.jackson/groupId

artifactIdjackson-mapper-asl/artifactId

scopeprovided/scope

version${jackson.version}/version

/dependency



Hope this helps someone else



andy


From:  Andrew Davidson a...@santacruzintegration.com
Date:  Wednesday, September 17, 2014 at 4:28 PM
To:  user@spark.apache.org user@spark.apache.org
Subject:  spark-1.1.0-bin-hadoop2.4 java.lang.NoClassDefFoundError:
org/codehaus/jackson/annotate/JsonClass

 Hi I am new to spark.
 
 I am trying to write a simple java program that process tweets that where
 collected and stored in a file. I figured the simplest thing to do would be to
 convert the JSON string into a java map. When I submit my jar file I keep
 getting the following error
 
 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass
 
 
 For the life of me I can not figure out what the problem is. I am using maven
 shade plugin and check to see that the missing class is my uber jar
 
 Any suggestions would be greatly appreciated.
 
 Andy
 
 P.s. I should mention that I am running everything on my local machine.
 
 properties
 
 jackson.version1.8.8/jackson.version !-- 1.9.13 --
 
 project.build.sourceEncodingUTF-8/project.build.sourceEncoding
 
 /properties
 
 
 
 dependencies
 
 dependency
 
 groupIdorg.codehaus.jackson/groupId
 
 artifactIdjackson-core-asl/artifactId
 
 version${jackson.version}/version
 
 /dependency
 
 dependency
 
 groupIdorg.codehaus.jackson/groupId
 
 artifactIdjackson-mapper-asl/artifactId
 
 version${jackson.version}/version
 
 /dependency
 
 
 
 I am using shade to build an uber jar
 
 
 
 $jar ­tvf target/myUber.jar
 
 Š
 
580 Wed Sep 17 16:17:36 PDT 2014
 org/codehaus/jackson/annotate/JsonClass.class
 
 Š
 
 
 
 
 14/09/17 16:13:24 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)
 
 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass
 
 at 
 org.codehaus.jackson.map.introspect.JacksonAnnotationIntrospector.findDeserial
 izationType(JacksonAnnotationIntrospector.java:524)
 
 at 
 org.codehaus.jackson.map.deser.BasicDeserializerFactory.modifyTypeByAnnotation
 (BasicDeserializerFactory.java:732)
 
 at 
 org.codehaus.jackson.map.deser.BasicDeserializerFactory.createMapDeserializer(
 BasicDeserializerFactory.java:337)
 
 at 
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createDeserializer(Std
 DeserializerProvider.java:377)
 
 at 
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCache2(StdDes
 erializerProvider.java:307)
 
 at 
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCacheValueDes
 erializer(StdDeserializerProvider.java:287)
 
 at 
 org.codehaus.jackson.map.deser.StdDeserializerProvider.findValueDeserializer(S
 tdDeserializerProvider.java:136)
 
 at 
 org.codehaus.jackson.map.deser.StdDeserializerProvider.findTypedValueDeseriali
 zer(StdDeserializerProvider.java:157)
 
 at 
 org.codehaus.jackson.map.ObjectMapper._findRootDeserializer(ObjectMapper.java:
 2468)
 
 at 
 org.codehaus.jackson.map.ObjectMapper._readMapAndClose(ObjectMapper.java:2402)
 
 at org.codehaus.jackson.map.ObjectMapper.readValue(ObjectMapper.java:1609)
 
 at com.santacruzintegration.spark.JSONHelper.toJsonMap(JSONHelper.java:40)
 
 
 
 
 
 public class JSONHelper {
 
 public static final ObjectMapper mapper = new ObjectMapper();
 
 static {
 
 mapper.configure(Feature.FAIL_ON_UNKNOWN_PROPERTIES, false);
 
 //mapper.configure(Feature.USE_ANNOTATIONS, false);
 
 }
 
 Š
 
public static MapString, String toJsonMap(String json) {
 
 System.err.println(AEDWIP toJsonMap:  + json);
 
 try {
 
 TypeReferenceHashMapString, String typeRef = new
 TypeReferenceHashMapString, String() {
 
 };
 
 //return mapper.readValue(json, new
 TypeReferenceHashMapString,String(){});
 
 return mapper.readValue(json, typeRef);
 
 //return mapper.convertValue(json, typeRef);
 
 
 
 //HashMapString,String ret =
 
 //new ObjectMapper().readValue(json, HashMap.class);
 
 } catch (Exception e) {
 
 throw new IOError(e);
 
 }
 
 }
 
 
 
 
 




Re: spark-1.1.0-bin-hadoop2.4 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

2014-09-18 Thread Yin Huai
Hello Andy,

Will our JSON support in Spark SQL help your case? If your JSON files store
one JSON object per line, you can use SQLContext.jsonFile to load it. If
you want to do pre-process these files, once you have an RDD[String] (one
JSON object per String), you can use SQLContext.jsonRDD. In both ways,
Spark SQL will infer the schema and you can query your datasets like
querying tables. The instruction about using jsonFile and jsonRDD can be
found at
https://spark.apache.org/docs/latest/sql-programming-guide.html#json-datasets
.

Thanks,

Yin

On Thu, Sep 18, 2014 at 2:36 PM, Andy Davidson 
a...@santacruzintegration.com wrote:

 After lots of hacking I figure out how to resolve this problem. This is
 good solution. It severalty cripples jackson but at least for now I am
 unblocked

 1) turn off annotations.
 mapper.configure(Feature.USE_ANNOTATIONS, false);


 2) in maven set the jackson dependencies as provided.

 properties

 jackson.version1.9.13/jackson.version !-- 1.8.8 1.9.13 2.3.4-Final
 --

 /properties


  dependencies

 dependency

 groupIdorg.codehaus.jackson/groupId

 artifactIdjackson-core-asl/artifactId

 scopeprovided/scope

 version${jackson.version}/version

 /dependency

 dependency

 groupIdorg.codehaus.jackson/groupId

 artifactIdjackson-mapper-asl/artifactId

 scopeprovided/scope

 version${jackson.version}/version

 /dependency


 Hope this helps someone else


 andy


 From: Andrew Davidson a...@santacruzintegration.com
 Date: Wednesday, September 17, 2014 at 4:28 PM
 To: user@spark.apache.org user@spark.apache.org
 Subject: spark-1.1.0-bin-hadoop2.4 java.lang.NoClassDefFoundError:
 org/codehaus/jackson/annotate/JsonClass

 Hi I am new to spark.

 I am trying to write a simple java program that process tweets that where
 collected and stored in a file. I figured the simplest thing to do would be
 to convert the JSON string into a java map. When I submit my jar file I
 keep getting the following error

 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

 For the life of me I can not figure out what the problem is. I am using
 maven shade plugin and check to see that the missing class is my uber jar

 Any suggestions would be greatly appreciated.

 Andy

 P.s. I should mention that I am running everything on my local machine.

 properties

 jackson.version1.8.8/jackson.version !-- 1.9.13 --

 project.build.sourceEncodingUTF-8/project.build.sourceEncoding

 /properties


 dependencies

 dependency

 groupIdorg.codehaus.jackson/groupId

 artifactIdjackson-core-asl/artifactId

 version${jackson.version}/version

 /dependency

 dependency

 groupIdorg.codehaus.jackson/groupId

 artifactIdjackson-mapper-asl/artifactId

 version${jackson.version}/version

 /dependency


 I am using shade to build an uber jar


 $jar –tvf target/myUber.jar

 …

580 Wed Sep 17 16:17:36 PDT 2014
 org/codehaus/jackson/annotate/JsonClass.class
 …


 14/09/17 16:13:24 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID
 0)

 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

 at
 org.codehaus.jackson.map.introspect.JacksonAnnotationIntrospector.findDeserializationType(JacksonAnnotationIntrospector.java:524)

 at
 org.codehaus.jackson.map.deser.BasicDeserializerFactory.modifyTypeByAnnotation(BasicDeserializerFactory.java:732)

 at
 org.codehaus.jackson.map.deser.BasicDeserializerFactory.createMapDeserializer(BasicDeserializerFactory.java:337)

 at
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createDeserializer(StdDeserializerProvider.java:377)

 at
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCache2(StdDeserializerProvider.java:307)

 at
 org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCacheValueDeserializer(StdDeserializerProvider.java:287)

 at
 org.codehaus.jackson.map.deser.StdDeserializerProvider.findValueDeserializer(StdDeserializerProvider.java:136)

 at
 org.codehaus.jackson.map.deser.StdDeserializerProvider.findTypedValueDeserializer(StdDeserializerProvider.java:157)

 at
 org.codehaus.jackson.map.ObjectMapper._findRootDeserializer(ObjectMapper.java:2468)

 at
 org.codehaus.jackson.map.ObjectMapper._readMapAndClose(ObjectMapper.java:2402)

 at org.codehaus.jackson.map.ObjectMapper.readValue(ObjectMapper.java:1609)

 at com.santacruzintegration.spark.JSONHelper.toJsonMap(JSONHelper.java:40)



 public class JSONHelper {

 public static final ObjectMapper mapper = new ObjectMapper();

 static {

 mapper.configure(Feature.FAIL_ON_UNKNOWN_PROPERTIES, false);

 //mapper.configure(Feature.USE_ANNOTATIONS, false);

 }

 …

public static MapString, String toJsonMap(String json) {

 System.err.println(AEDWIP toJsonMap:  + json);

 try {

 TypeReferenceHashMapString, String typeRef = new
 TypeReferenceHashMapString, String() {

 };

 //return mapper.readValue(json, new
 TypeReferenceHashMapString,String

spark-1.1.0-bin-hadoop2.4 java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

2014-09-17 Thread Andy Davidson
Hi I am new to spark.

I am trying to write a simple java program that process tweets that where
collected and stored in a file. I figured the simplest thing to do would be
to convert the JSON string into a java map. When I submit my jar file I keep
getting the following error

java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass


For the life of me I can not figure out what the problem is. I am using
maven shade plugin and check to see that the missing class is my uber jar

Any suggestions would be greatly appreciated.

Andy

P.s. I should mention that I am running everything on my local machine.

properties

jackson.version1.8.8/jackson.version !-- 1.9.13 --

project.build.sourceEncodingUTF-8/project.build.sourceEncoding

/properties



dependencies

dependency

groupIdorg.codehaus.jackson/groupId

artifactIdjackson-core-asl/artifactId

version${jackson.version}/version

/dependency

dependency

groupIdorg.codehaus.jackson/groupId

artifactIdjackson-mapper-asl/artifactId

version${jackson.version}/version

/dependency



I am using shade to build an uber jar



$jar ­tvf target/myUber.jar

Š

   580 Wed Sep 17 16:17:36 PDT 2014
org/codehaus/jackson/annotate/JsonClass.class

Š




14/09/17 16:13:24 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)

java.lang.NoClassDefFoundError: org/codehaus/jackson/annotate/JsonClass

at 
org.codehaus.jackson.map.introspect.JacksonAnnotationIntrospector.findDeseri
alizationType(JacksonAnnotationIntrospector.java:524)

at 
org.codehaus.jackson.map.deser.BasicDeserializerFactory.modifyTypeByAnnotati
on(BasicDeserializerFactory.java:732)

at 
org.codehaus.jackson.map.deser.BasicDeserializerFactory.createMapDeserialize
r(BasicDeserializerFactory.java:337)

at 
org.codehaus.jackson.map.deser.StdDeserializerProvider._createDeserializer(S
tdDeserializerProvider.java:377)

at 
org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCache2(StdD
eserializerProvider.java:307)

at 
org.codehaus.jackson.map.deser.StdDeserializerProvider._createAndCacheValueD
eserializer(StdDeserializerProvider.java:287)

at 
org.codehaus.jackson.map.deser.StdDeserializerProvider.findValueDeserializer
(StdDeserializerProvider.java:136)

at 
org.codehaus.jackson.map.deser.StdDeserializerProvider.findTypedValueDeseria
lizer(StdDeserializerProvider.java:157)

at 
org.codehaus.jackson.map.ObjectMapper._findRootDeserializer(ObjectMapper.jav
a:2468)

at 
org.codehaus.jackson.map.ObjectMapper._readMapAndClose(ObjectMapper.java:240
2)

at org.codehaus.jackson.map.ObjectMapper.readValue(ObjectMapper.java:1609)

at com.santacruzintegration.spark.JSONHelper.toJsonMap(JSONHelper.java:40)





public class JSONHelper {

public static final ObjectMapper mapper = new ObjectMapper();

static {

mapper.configure(Feature.FAIL_ON_UNKNOWN_PROPERTIES, false);

//mapper.configure(Feature.USE_ANNOTATIONS, false);

}

Š

   public static MapString, String toJsonMap(String json) {

System.err.println(AEDWIP toJsonMap:  + json);

try {

TypeReferenceHashMapString, String typeRef = new
TypeReferenceHashMapString, String() {

};

//return mapper.readValue(json, new
TypeReferenceHashMapString,String(){});

return mapper.readValue(json, typeRef);

//return mapper.convertValue(json, typeRef);



//HashMapString,String ret =

//new ObjectMapper().readValue(json, HashMap.class);

} catch (Exception e) {

throw new IOError(e);

}

}