Re: [gridengine users] Fwd: Request: JOB_ID, QUEUE, etc. variables in a QLOGIN session
It works! THANK YOU!!
The modified code snippet to make it work within the Rocks Cluster
Distribution is as follows:
###
# Reuti / Grid Engine Mailing List
# Wed, 12 Dec 2018 13:13:37 -0500
MYPARENT=$(ps -p $$ -o ppid --no-header)
MYSTARTUP=$(ps -p ${MYPARENT} -o command --no-header)
if [ "${MYSTARTUP:0:13}" = "sge_shepherd-" ]
then
MYJOBID=${MYSTARTUP:13}
MYJOBID=${MYJOBID% -bg}
while read LINE
do
export ${LINE}
done <
/opt/gridengine/default/spool/${HOSTNAME%%.*}/active_jobs/${MYJOBID}.1/environment
unset HISTFILE
if [ -n "${MYJOBID}" ]
then
source /opt/gridengine/default/common/settings.sh
qstat -j ${MYJOBID} | \
sed -n -e "/^context/s/^context: *//p" | \
tr "," "\n" | \
sed -n -e "s/^MESSAGE=//p"
fi
fi
###
Best regards,
Gowtham
--
Gowtham, PhD
Director of Research Computing, IT
Research Associate Professor, ECE
Michigan Technological University
P: (906) 487-4096
F: (906) 487-2787
https://it.mtu.edu
https://hpc.mtu.edu
On Wed, Dec 12, 2018 at 1:06 PM Gowtham wrote:
> Thank you!
>
> I'll try this out and let you know how it goes :)
>
> Best regards,
> Gowtham
>
> --
> Gowtham, PhD
> Director of Research Computing, IT
> Research Associate Professor, ECE
> Michigan Technological University
>
> P: (906) 487-4096
> F: (906) 487-2787
> https://it.mtu.edu
> https://hpc.mtu.edu
>
>
> On Wed, Dec 12, 2018 at 12:52 PM Reuti wrote:
>
>> Hi,
>>
>> > Am 12.12.2018 um 17:50 schrieb Gowtham :
>> >
>> > Greetings.
>> >
>> > I am wondering if there's a way to access JOB_ID, QUEUE and other such
>> SGE variables from within a QLOGIN session. For example,
>> > • I type 'qlogin' and gain access to one of the compute nodes.
>> > • Running 'qstat -u ${USER}' lists this QLOGIN session with a
>> 'job-ID'
>> > • The command, echo ${JOB_ID}, returns blank from within that
>> QLOGIN session instead of showing the number displayed in #2.
>> > Please let me know if there's a way to achieve this.
>>
>> The shell you get performed a fresh startup and does not know anything
>> about the formerly set environment variables by the sgeexecd.
>>
>> I have this snippet below, please put it in your ~/.bash_profile. resp.
>> ~/.profile; whichever you prefer and use. The number of MYPARENT
>> assignments depends on the method you started the session: rsh, ssh or
>> built-in. IIRC the last `if [ -n "$MYJOBID" ];` section had only the
>> purpose to display a message, which was set with "-ac" during submission
>> and might not be necessary here.
>>
>> -- Reuti
>>
>> MYPARENT=`ps -p $$ -o ppid --no-header`
>> #MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
>> #MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
>> MYSTARTUP=`ps -p $MYPARENT -o command --no-header`
>>
>> if [ "${MYSTARTUP:0:13}" = "sge_shepherd-" ]; then
>>echo "Running inside SGE"
>>MYJOBID=${MYSTARTUP:13}
>>MYJOBID=${MYJOBID% -bg}
>>echo "Job $MYJOBID"
>>
>>while read LINE; do export $LINE; done <
>> /var/spool/sge/${HOSTNAME%%.*}/active_jobs/$MYJOBID.1/environment
>>unset HISTFILE
>>
>>if [ -n "$MYJOBID" ]; then
>> . /usr/sge/default/common/settings.sh
>>qstat -j $MYJOBID | sed -n -e "/^context/s/^context: *//p" | tr
>> "," "\n" | sed -n -e "s/^MESSAGE=//p"
>>fi
>> fi
>>
>
___
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Re: [gridengine users] Fwd: Request: JOB_ID, QUEUE, etc. variables in a QLOGIN session
Thank you!
I'll try this out and let you know how it goes :)
Best regards,
Gowtham
--
Gowtham, PhD
Director of Research Computing, IT
Research Associate Professor, ECE
Michigan Technological University
P: (906) 487-4096
F: (906) 487-2787
https://it.mtu.edu
https://hpc.mtu.edu
On Wed, Dec 12, 2018 at 12:52 PM Reuti wrote:
> Hi,
>
> > Am 12.12.2018 um 17:50 schrieb Gowtham :
> >
> > Greetings.
> >
> > I am wondering if there's a way to access JOB_ID, QUEUE and other such
> SGE variables from within a QLOGIN session. For example,
> > • I type 'qlogin' and gain access to one of the compute nodes.
> > • Running 'qstat -u ${USER}' lists this QLOGIN session with a
> 'job-ID'
> > • The command, echo ${JOB_ID}, returns blank from within that
> QLOGIN session instead of showing the number displayed in #2.
> > Please let me know if there's a way to achieve this.
>
> The shell you get performed a fresh startup and does not know anything
> about the formerly set environment variables by the sgeexecd.
>
> I have this snippet below, please put it in your ~/.bash_profile. resp.
> ~/.profile; whichever you prefer and use. The number of MYPARENT
> assignments depends on the method you started the session: rsh, ssh or
> built-in. IIRC the last `if [ -n "$MYJOBID" ];` section had only the
> purpose to display a message, which was set with "-ac" during submission
> and might not be necessary here.
>
> -- Reuti
>
> MYPARENT=`ps -p $$ -o ppid --no-header`
> #MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
> #MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
> MYSTARTUP=`ps -p $MYPARENT -o command --no-header`
>
> if [ "${MYSTARTUP:0:13}" = "sge_shepherd-" ]; then
>echo "Running inside SGE"
>MYJOBID=${MYSTARTUP:13}
>MYJOBID=${MYJOBID% -bg}
>echo "Job $MYJOBID"
>
>while read LINE; do export $LINE; done <
> /var/spool/sge/${HOSTNAME%%.*}/active_jobs/$MYJOBID.1/environment
>unset HISTFILE
>
>if [ -n "$MYJOBID" ]; then
> . /usr/sge/default/common/settings.sh
>qstat -j $MYJOBID | sed -n -e "/^context/s/^context: *//p" | tr ","
> "\n" | sed -n -e "s/^MESSAGE=//p"
>fi
> fi
>
___
users mailing list
users@gridengine.org
https://gridengine.org/mailman/listinfo/users
Re: [gridengine users] Fwd: Request: JOB_ID, QUEUE, etc. variables in a QLOGIN session
Hi,
> Am 12.12.2018 um 17:50 schrieb Gowtham :
>
> Greetings.
>
> I am wondering if there's a way to access JOB_ID, QUEUE and other such SGE
> variables from within a QLOGIN session. For example,
> • I type 'qlogin' and gain access to one of the compute nodes.
> • Running 'qstat -u ${USER}' lists this QLOGIN session with a 'job-ID'
> • The command, echo ${JOB_ID}, returns blank from within that QLOGIN
> session instead of showing the number displayed in #2.
> Please let me know if there's a way to achieve this.
The shell you get performed a fresh startup and does not know anything about
the formerly set environment variables by the sgeexecd.
I have this snippet below, please put it in your ~/.bash_profile. resp.
~/.profile; whichever you prefer and use. The number of MYPARENT assignments
depends on the method you started the session: rsh, ssh or built-in. IIRC the
last `if [ -n "$MYJOBID" ];` section had only the purpose to display a message,
which was set with "-ac" during submission and might not be necessary here.
-- Reuti
MYPARENT=`ps -p $$ -o ppid --no-header`
#MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
#MYPARENT=`ps -p $MYPARENT -o ppid --no-header`
MYSTARTUP=`ps -p $MYPARENT -o command --no-header`
if [ "${MYSTARTUP:0:13}" = "sge_shepherd-" ]; then
echo "Running inside SGE"
MYJOBID=${MYSTARTUP:13}
MYJOBID=${MYJOBID% -bg}
echo "Job $MYJOBID"
while read LINE; do export $LINE; done <
/var/spool/sge/${HOSTNAME%%.*}/active_jobs/$MYJOBID.1/environment
unset HISTFILE
if [ -n "$MYJOBID" ]; then
. /usr/sge/default/common/settings.sh
qstat -j $MYJOBID | sed -n -e "/^context/s/^context: *//p" | tr "," "\n"
| sed -n -e "s/^MESSAGE=//p"
fi
fi
___
users mailing list
users@gridengine.org
https://gridengine.org/mailman/listinfo/users
[gridengine users] Fwd: Request: JOB_ID, QUEUE, etc. variables in a QLOGIN session
Greetings.
I am wondering if there's a way to access JOB_ID, QUEUE and other such SGE
variables from within a QLOGIN session. For example,
1. I type 'qlogin' and gain access to one of the compute nodes.
2. Running 'qstat -u ${USER}' lists this QLOGIN session with a 'job-ID'
3. The command, echo ${JOB_ID}, returns blank from within that QLOGIN
session instead of showing the number displayed in #2.
Please let me know if there's a way to achieve this.
Best regards,
Gowtham
--
Gowtham, PhD
Director of Research Computing, IT
Research Associate Professor, ECE
Michigan Technological University
P: (906) 487-4096
F: (906) 487-2787
https://it.mtu.edu
https://hpc.mtu.edu
___
users mailing list
users@gridengine.org
https://gridengine.org/mailman/listinfo/users
