Re: [SOLVED] Re: >60gb of reserved memory??

2018-06-25 Thread Wolfgang Pfeiffer

On Mon, Jun 25, 2018 at 01:09:55PM +0300, Susi Lehtola wrote:

On 06/22/2018 02:50 PM, Wolfgang Pfeiffer wrote:

I'd try a newer kernel from the 4.17 series from the non-official
kernel repo for Fedora, just to narrow down the issue and see, whether
it's really a kernel thing:

https://fedoraproject.org/wiki/Kernel_Vanilla_Repositories


This turned out to be a bad proposal, since the workstation didn't 
boot up anymore with the vanilla kernel.


Perhaps I should have explicitly quoted here what the page also
says:

" Important notes ...
  most systems work better and run in a more secure manner with the
  official Fedora kernels"

Next time I might just mention exactly this ... ;)

Fortunately, the local IT support went in and updated the BIOS which 
fixed the memory issue


Congratulations!
And thanks for the feed-back! 


Wolfgang
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[SOLVED] Re: >60gb of reserved memory??

2018-06-25 Thread Susi Lehtola

On 06/22/2018 02:50 PM, Wolfgang Pfeiffer wrote:

I'd try a newer kernel from the 4.17 series from the non-official
kernel repo for Fedora, just to narrow down the issue and see, whether
it's really a kernel thing:

https://fedoraproject.org/wiki/Kernel_Vanilla_Repositories


This turned out to be a bad proposal, since the workstation didn't boot 
up anymore with the vanilla kernel.


Fortunately, the local IT support went in and updated the BIOS which 
fixed the memory issue

$ free
  totalusedfree  shared  buff/cache 
available
Mem:   65845468  69088064087868  161676 1066720 
64368104

Swap:  62499836   062499836

and they also booted the computer in a Fedora kernel. (I'm off-site for 
a couple of months.)


I.e. the BIOS was the problem, as I had suspected.
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Re: >60gb of reserved memory??

2018-06-23 Thread Samuel Sieb

On 06/21/2018 09:55 AM, Rick Stevens wrote:

RAMdisk (e.g. /tmp). By default, Fedora uses 50% of your RAM for /tmp
(an absolutely idiotic idea, IMHO, which is why I turn that off and use
a normal filesystem directory for /tmp).


Are you aware that the tmpfs memory is not reserved, that the size is 
only a limit for how much it can use?  Also, the used memory can be 
swapped out if the memory pressure gets too high.

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Re: >60gb of reserved memory??

2018-06-22 Thread Wolfgang Pfeiffer

On Thu, Jun 21, 2018 at 09:13:00PM +0300, Susi Lehtola wrote:

On 06/21/2018 07:51 PM, Patrick O'Callaghan wrote:

AFAIK Fedora uses the available RAM as a) buffer space, and b) the /tmp
filesystem.

BTW a slightly more user-friendly way to get that info is with the
free(1) command.


The joke is, the >60GB of missing memory doesn't even show up in free:

$ free
 totalusedfree  shared  buff/cache 
available

Mem:2400708 1093732  284844  121920 1022132 957848
Swap:  62499836   062499836

For some reason the kernel marks it as reserved.

On 06/21/2018 07:55 PM, Rick Stevens wrote:

Try installing htop ("$ sudo dnf install htop"), run it, press F6 and
select which memory item you want to sort by. That'll tell you what
process is sucking up memory.


Same goes for htop. It's showing I have 2.29G of memory.


Update: I upgraded from Fedora 27 to Fedora 28, and the same issue 
persists. Of course, the kernel is almost the same.


I'd try a newer kernel from the 4.17 series from the non-official
kernel repo for Fedora, just to narrow down the issue and see, whether
it's really a kernel thing:

https://fedoraproject.org/wiki/Kernel_Vanilla_Repositories

I've had issues here, too, on F27, and at least one of them seems to
be gone with such a kernel:

% uname -r
4.17.2-250.vanilla.knurd.1.fc27.x86_64

HTH, and Regards.

Good luck!
Wolfgang
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Re: >60gb of reserved memory??

2018-06-21 Thread Rick Stevens
On 06/21/2018 03:24 PM, Susi Lehtola wrote:
> On 06/22/2018 12:00 AM, Rick Stevens wrote:
>> On 06/21/2018 11:13 AM, Susi Lehtola wrote:
>>> Update: I upgraded from Fedora 27 to Fedora 28, and the same issue
>>> persists. Of course, the kernel is almost the same.
>>>
>>> This has to be some weird kernel / BIOS bug...
>>
>> Can you send us the content of /proc/cmdline?
> 
> $ cat /proc/cmdline
> BOOT_IMAGE=/vmlinuz-4.16.16-300.fc28.x86_64
> root=/dev/mapper/luks-1d176bad-1b27-4e38-8c18-61a8b96517db ro
> rd.luks.uuid=luks-1d176bad-1b27-4e38-8c18-61a8b96517db
> rd.luks.uuid=luks-aae08a03-2832-4b82-8d74-598e02c6c445 rhgb quiet
> LANG=en_US.UTF-8

Ok, I don't see anything obnoxious there.

>> Also check any RAMdisks you may have (e.g. "df -h | grep tmpfs"). See
>> if any of them are possibly eating up RAM. I'd suspect /tmp and
>> (possibly) your swap partition.
> $ df -h |grep tmpfs
> devtmpfs    3.9G 0  3.9G   0% /dev
> tmpfs   3.9G 0  3.9G   0% /dev/shm
> tmpfs   3.9G  1.8M  3.9G   1% /run
> tmpfs   3.9G 0  3.9G   0% /sys/fs/cgroup
> tmpfs   3.9G  104K  3.9G   1% /tmp
> tmpfs   789M   16K  789M   1% /run/user/42
> tmpfs   789M   24K  789M   1% /run/user/1000

Yeah, I don't see anything there truly worrying either. Don't know
what swap looks like (try "swapon" to see). If it's a partition
(like "dm-1" or something), that's not it, either.

> so this still would leave something like 40GB missing.

Yup. It is odd. I've never seen anything like this unless you have
something weird starting up early in the boot process. Perhaps a device
driver that's got weird stuff in its configuration and is part of your
initramfs. Do an "lsmod" and see if one of the modules listed is using a
boatload of memory. If so, then check the /etc/modprobe.d/* file for it
and see if there's something odd in there.

> I opened up a bug on the kernel tracker at
> https://bugzilla.redhat.com/show_bug.cgi?id=1593878

Yeah, that might be your best bet.
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Re: >60gb of reserved memory??

2018-06-21 Thread Susi Lehtola

On 06/22/2018 12:00 AM, Rick Stevens wrote:

On 06/21/2018 11:13 AM, Susi Lehtola wrote:
Update: I upgraded from Fedora 27 to Fedora 28, and the same issue 
persists. Of course, the kernel is almost the same.


This has to be some weird kernel / BIOS bug...


Can you send us the content of /proc/cmdline?


$ cat /proc/cmdline
BOOT_IMAGE=/vmlinuz-4.16.16-300.fc28.x86_64
root=/dev/mapper/luks-1d176bad-1b27-4e38-8c18-61a8b96517db ro
rd.luks.uuid=luks-1d176bad-1b27-4e38-8c18-61a8b96517db
rd.luks.uuid=luks-aae08a03-2832-4b82-8d74-598e02c6c445 rhgb quiet
LANG=en_US.UTF-8


Also check any RAMdisks you may have (e.g. "df -h | grep tmpfs"). See
if any of them are possibly eating up RAM. I'd suspect /tmp and
(possibly) your swap partition.

$ df -h |grep tmpfs
devtmpfs3.9G 0  3.9G   0% /dev
tmpfs   3.9G 0  3.9G   0% /dev/shm
tmpfs   3.9G  1.8M  3.9G   1% /run
tmpfs   3.9G 0  3.9G   0% /sys/fs/cgroup
tmpfs   3.9G  104K  3.9G   1% /tmp
tmpfs   789M   16K  789M   1% /run/user/42
tmpfs   789M   24K  789M   1% /run/user/1000

so this still would leave something like 40GB missing.

I opened up a bug on the kernel tracker at
https://bugzilla.redhat.com/show_bug.cgi?id=1593878
--
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Re: >60gb of reserved memory??

2018-06-21 Thread Rick Stevens
On 06/21/2018 11:13 AM, Susi Lehtola wrote:
> On 06/21/2018 07:51 PM, Patrick O'Callaghan wrote:
>> AFAIK Fedora uses the available RAM as a) buffer space, and b) the /tmp
>> filesystem.
>>
>> BTW a slightly more user-friendly way to get that info is with the
>> free(1) command.
> 
> The joke is, the >60GB of missing memory doesn't even show up in free:
> 
> $ free
>   total    used    free  shared  buff/cache
> available
> Mem:    2400708 1093732  284844  121920 1022132 957848
> Swap:  62499836   0    62499836
> 
> For some reason the kernel marks it as reserved.
> 
> On 06/21/2018 07:55 PM, Rick Stevens wrote:
>> Try installing htop ("$ sudo dnf install htop"), run it, press F6 and
>> select which memory item you want to sort by. That'll tell you what
>> process is sucking up memory.
> 
> Same goes for htop. It's showing I have 2.29G of memory.
> 
> 
> Update: I upgraded from Fedora 27 to Fedora 28, and the same issue
> persists. Of course, the kernel is almost the same.
> 
> This has to be some weird kernel / BIOS bug...

Can you send us the content of /proc/cmdline?

Also check any RAMdisks you may have (e.g. "df -h | grep tmpfs"). See if
any of them are possibly eating up RAM. I'd suspect /tmp and (possibly)
your swap partition.
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Re: >60gb of reserved memory??

2018-06-21 Thread Matthew Miller
On Thu, Jun 21, 2018 at 02:41:32PM -0400, Tom Horsley wrote:
> You didn't install a 32 bit version of fedora did you?
> With no more PAE kernels being provided the only way to
> get to big memory is with a 64 bit kernel.

From the original post, looks like 64 bit:
"I am running an up-to-date Fedora 27 x86_64 with kernel
4.16.15-200.fc27.x86_64"

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Re: >60gb of reserved memory??

2018-06-21 Thread Tom Horsley
You didn't install a 32 bit version of fedora did you?
With no more PAE kernels being provided the only way to
get to big memory is with a 64 bit kernel.
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Re: >60gb of reserved memory??

2018-06-21 Thread Joe Zeff

On 06/21/2018 09:05 AM, Susi Lehtola wrote:


Does anyone have any idea of what could be going on?


Running free -h will give you a better idea of how it's being used.
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Re: >60gb of reserved memory??

2018-06-21 Thread Matthew Miller
On Thu, Jun 21, 2018 at 07:05:16PM +0300, Susi Lehtola wrote:
> I just noticed a very weird problem on my workstation. Although the
> machine has 64 GB of RAM installed,
> $ head -n 1 /proc/meminfo
> MemTotal:2400748 kB
> that is, only a few gigabytes are actually available.
> Unfortunately I don't have physical access to the machine, which is
> a HP desktop bought last fall. According to dmesg, the model is
> something like

Is there anything about memory in /proc/cmdline?

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Re: >60gb of reserved memory??

2018-06-21 Thread Susi Lehtola

On 06/21/2018 07:51 PM, Patrick O'Callaghan wrote:
> AFAIK Fedora uses the available RAM as a) buffer space, and b) the /tmp
> filesystem.
>
> BTW a slightly more user-friendly way to get that info is with the
> free(1) command.

The joke is, the >60GB of missing memory doesn't even show up in free:

$ free
  totalusedfree  shared  buff/cache 
available

Mem:2400708 1093732  284844  121920 1022132 957848
Swap:  62499836   062499836

For some reason the kernel marks it as reserved.

On 06/21/2018 07:55 PM, Rick Stevens wrote:
> Try installing htop ("$ sudo dnf install htop"), run it, press F6 and
> select which memory item you want to sort by. That'll tell you what
> process is sucking up memory.

Same goes for htop. It's showing I have 2.29G of memory.


Update: I upgraded from Fedora 27 to Fedora 28, and the same issue 
persists. Of course, the kernel is almost the same.


This has to be some weird kernel / BIOS bug...
--
Susi Lehtola
Fedora Project Contributor
jussileht...@fedoraproject.org
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Re: >60gb of reserved memory??

2018-06-21 Thread Rick Stevens
On 06/21/2018 09:05 AM, Susi Lehtola wrote:
> Dear all,
> 
> 
> I just noticed a very weird problem on my workstation. Although the
> machine has 64 GB of RAM installed,
> 
> $ head -n 1 /proc/meminfo
> MemTotal:    2400748 kB
> 
> that is, only a few gigabytes are actually available.
> 
> Unfortunately I don't have physical access to the machine, which is a HP
> desktop bought last fall. According to dmesg, the model is something like
> 
> [    0.00] DMI: HP HP EliteDesk 800 G3 TWR/8298, BIOS P01 Ver. 02.06
> 06/09/2017
> 
> Also according to dmesg, it appears that the kernel *does* see all 64
> gigs, BUT OVER 60 GB IS RESERVED MEMORY!!
> 
> [    0.00] Memory: 2326720K/66985176K available (12300K kernel code,
> 1568K rwdata, 3836K rodata, 2124K init, 1368K bss, 64658456K reserved,
> 0K cma-reserved)
> 
> Does anyone have any idea of what could be going on?

Try installing htop ("$ sudo dnf install htop"), run it, press F6 and
select which memory item you want to sort by. That'll tell you what
process is sucking up memory.

Not knowing what your system is doing, it's hard to predict what it'd
be. Stuff like Java and memcached are candidates, as would a big tempfs
RAMdisk (e.g. /tmp). By default, Fedora uses 50% of your RAM for /tmp
(an absolutely idiotic idea, IMHO, which is why I turn that off and use
a normal filesystem directory for /tmp).
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Re: >60gb of reserved memory??

2018-06-21 Thread Patrick O'Callaghan
On Thu, 2018-06-21 at 19:05 +0300, Susi Lehtola wrote:
> Dear all,
> 
> 
> I just noticed a very weird problem on my workstation. Although the 
> machine has 64 GB of RAM installed,
> 
> $ head -n 1 /proc/meminfo
> MemTotal:2400748 kB
> 
> that is, only a few gigabytes are actually available.
> 
> Unfortunately I don't have physical access to the machine, which is a HP 
> desktop bought last fall. According to dmesg, the model is something like
> 
> [0.00] DMI: HP HP EliteDesk 800 G3 TWR/8298, BIOS P01 Ver. 02.06 
> 06/09/2017
> 
> Also according to dmesg, it appears that the kernel *does* see all 64 
> gigs, BUT OVER 60 GB IS RESERVED MEMORY!!
> 
> [0.00] Memory: 2326720K/66985176K available (12300K kernel code, 
> 1568K rwdata, 3836K rodata, 2124K init, 1368K bss, 64658456K reserved, 
> 0K cma-reserved)
> 
> Does anyone have any idea of what could be going on?
> 
> I am running an up-to-date Fedora 27 x86_64 with kernel 
> 4.16.15-200.fc27.x86_64.--

AFAIK Fedora uses the available RAM as a) buffer space, and b) the /tmp
filesystem.

BTW a slightly more user-friendly way to get that info is with the
free(1) command.

poc
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>60gb of reserved memory??

2018-06-21 Thread Susi Lehtola

Dear all,


I just noticed a very weird problem on my workstation. Although the 
machine has 64 GB of RAM installed,


$ head -n 1 /proc/meminfo
MemTotal:2400748 kB

that is, only a few gigabytes are actually available.

Unfortunately I don't have physical access to the machine, which is a HP 
desktop bought last fall. According to dmesg, the model is something like


[0.00] DMI: HP HP EliteDesk 800 G3 TWR/8298, BIOS P01 Ver. 02.06 
06/09/2017


Also according to dmesg, it appears that the kernel *does* see all 64 
gigs, BUT OVER 60 GB IS RESERVED MEMORY!!


[0.00] Memory: 2326720K/66985176K available (12300K kernel code, 
1568K rwdata, 3836K rodata, 2124K init, 1368K bss, 64658456K reserved, 
0K cma-reserved)


Does anyone have any idea of what could be going on?

I am running an up-to-date Fedora 27 x86_64 with kernel 
4.16.15-200.fc27.x86_64.--

Susi Lehtola
Fedora Project Contributor
jussileht...@fedoraproject.org
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