[OMPI users] OpenMPI not running any job on Mac OS X 10.12
I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have been trying to run simple program. I configured openmpi with ../configure --disable-shared --prefix ~/.local make all install Then I have a simple code only containing a call to MPI_Init. I compile it with mpirun -np 2 ./mpitest The output is: [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_patcher_overwrite: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_mmap: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_posix: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_sysv: File not found (ignored) -- It looks like opal_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during opal_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_shmem_base_select failed --> Returned value -1 instead of OPAL_SUCCESS -- Without the --disable-shared in the configuration, then I get: [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666 -- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): pmix server init failed --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS -- Has anyone seen this? What am I missing? ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Hi Michel It's somewhat unusual to use the disable-shared configure option. That may be causing this. Could you try to build without using this option and see if you still see the problem? Thanks, Howard Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um 21:07: > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have > been trying to run simple program. > I configured openmpi with > ../configure --disable-shared --prefix ~/.local > make all install > > Then I have a simple code only containing a call to MPI_Init. > I compile it with > mpirun -np 2 ./mpitest > > The output is: > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_patcher_overwrite: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_mmap: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_posix: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_sysv: File not found (ignored) > > -- > > It looks like opal_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during opal_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > opal_shmem_base_select failed > > --> Returned value -1 instead of OPAL_SUCCESS > > -- > > Without the --disable-shared in the configuration, then I get: > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line > 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > -- > > > > > Has anyone seen this? What am I missing? > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Michel -- Also, did you install Open MPI v2.0.2 over a prior version of Open MPI (i.e., with the same prefix value to configure)? That would almost certainly cause a problem. > On Feb 2, 2017, at 7:56 AM, Howard Pritchard wrote: > > Hi Michel > > It's somewhat unusual to use the disable-shared configure option. That may > be causing this. Could you try to build without using this option and see if > you still see the problem? > > > Thanks, > > Howard > > Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um > 21:07: > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have > been trying to run simple program. > I configured openmpi with > ../configure --disable-shared --prefix ~/.local > make all install > > Then I have a simple code only containing a call to MPI_Init. > I compile it with > mpirun -np 2 ./mpitest > > The output is: > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable > to open mca_patcher_overwrite: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable > to open mca_shmem_mmap: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable > to open mca_shmem_posix: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable > to open mca_shmem_sysv: File not found (ignored) > > -- > > It looks like opal_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during opal_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > > opal_shmem_base_select failed > > --> Returned value -1 instead of OPAL_SUCCESS > > -- > > Without the --disable-shared in the configuration, then I get: > > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter > in file ../../orte/orted/pmix/pmix_server.c at line 264 > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter > in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > > -- > > > > > > > > Has anyone seen this? What am I missing? > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users -- Jeff Squyres jsquy...@cisco.com ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Hi Michael, I reproduced this problem on my Mac too: pn1249323:~/ompi/examples (v2.0.x *)$ mpirun -np 2 ./ring_c [pn1249323.lanl.gov:94283] mca_base_component_repository_open: unable to open mca_patcher_overwrite: File not found (ignored) [pn1249323.lanl.gov:94283] mca_base_component_repository_open: unable to open mca_shmem_mmap: File not found (ignored) [pn1249323.lanl.gov:94283] mca_base_component_repository_open: unable to open mca_shmem_posix: File not found (ignored) [pn1249323.lanl.gov:94283] mca_base_component_repository_open: unable to open mca_shmem_sysv: File not found (ignored) -- It looks like opal_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during opal_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_shmem_base_select failed --> Returned value -1 instead of OPAL_SUCCESS Is there a reason why you are using the --disable-shared option? Can you use the --disable-dlopen instead? I'll do some more investigating and open an issue. Howard 2017-02-01 19:05 GMT-07:00 Michel Lesoinne : > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have > been trying to run simple program. > I configured openmpi with > ../configure --disable-shared --prefix ~/.local > make all install > > Then I have a simple code only containing a call to MPI_Init. > I compile it with > mpirun -np 2 ./mpitest > > The output is: > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_patcher_overwrite: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_mmap: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_posix: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_sysv: File not found (ignored) > > -- > > It looks like opal_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during opal_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > opal_shmem_base_select failed > > --> Returned value -1 instead of OPAL_SUCCESS > > -- > > Without the --disable-shared in the configuration, then I get: > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at > line 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > -- > > > > > Has anyone seen this? What am I missing? > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Hi Michel Try adding --enable-static to the configure. That fixed the problem for me. Howard Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um 19:07: > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have > been trying to run simple program. > I configured openmpi with > ../configure --disable-shared --prefix ~/.local > make all install > > Then I have a simple code only containing a call to MPI_Init. > I compile it with > mpirun -np 2 ./mpitest > > The output is: > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_patcher_overwrite: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_mmap: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_posix: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_sysv: File not found (ignored) > > -- > > It looks like opal_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during opal_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > opal_shmem_base_select failed > > --> Returned value -1 instead of OPAL_SUCCESS > > -- > > Without the --disable-shared in the configuration, then I get: > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line > 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > -- > > > > > Has anyone seen this? What am I missing? > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
I am disabling shared to make it a bit easier, not having to setup the DYLD_LIBRARY_PATH. But not disabling 'shared' results in similar behavior, though with different messages (the line numbers are a bit shifted as I tried to debug some arguments): *[Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../orte/orted/pmix/pmix_server.c at line 264* *[Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666* *--* *It looks like orte_init failed for some reason; your parallel process is* *likely to abort. There are many reasons that a parallel process can* *fail during orte_init; some of which are due to configuration or* *environment problems. This failure appears to be an internal failure;* *here's some additional information (which may only be relevant to an* *Open MPI developer):* * pmix server init failed* * --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS* -- On Thu, Feb 2, 2017 at 5:56 AM, Howard Pritchard wrote: > Hi Michel > > It's somewhat unusual to use the disable-shared configure option. That > may be causing this. Could you try to build without using this option and > see if you still see the problem? > > > Thanks, > > Howard > > Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um > 21:07: > >> I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and >> have been trying to run simple program. >> I configured openmpi with >> ../configure --disable-shared --prefix ~/.local >> make all install >> >> Then I have a simple code only containing a call to MPI_Init. >> I compile it with >> mpirun -np 2 ./mpitest >> >> The output is: >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_patcher_overwrite: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_mmap: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_posix: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_sysv: File not found (ignored) >> >> >> -- >> >> It looks like opal_init failed for some reason; your parallel process is >> >> likely to abort. There are many reasons that a parallel process can >> >> fail during opal_init; some of which are due to configuration or >> >> environment problems. This failure appears to be an internal failure; >> >> here's some additional information (which may only be relevant to an >> >> Open MPI developer): >> >> >> opal_shmem_base_select failed >> >> --> Returned value -1 instead of OPAL_SUCCESS >> >> >> -- >> >> Without the --disable-shared in the configuration, then I get: >> >> >> [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad >> parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 >> >> [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad >> parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at >> line 666 >> >> >> -- >> >> It looks like orte_init failed for some reason; your parallel process is >> >> likely to abort. There are many reasons that a parallel process can >> >> fail during orte_init; some of which are due to configuration or >> >> environment problems. This failure appears to be an internal failure; >> >> here's some additional information (which may only be relevant to an >> >> Open MPI developer): >> >> >> pmix server init failed >> >> --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS >> >> >> -- >> >> >> >> >> Has anyone seen this? What am I missing? >> ___ >> users mailing list >> users@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
No previous version installed. This is a brand new laptop on which no MPI of any kind was installed previously. On Thu, Feb 2, 2017 at 6:11 AM, Jeff Squyres (jsquyres) wrote: > Michel -- > > Also, did you install Open MPI v2.0.2 over a prior version of Open MPI > (i.e., with the same prefix value to configure)? That would almost > certainly cause a problem. > > > > On Feb 2, 2017, at 7:56 AM, Howard Pritchard > wrote: > > > > Hi Michel > > > > It's somewhat unusual to use the disable-shared configure option. That > may be causing this. Could you try to build without using this option and > see if you still see the problem? > > > > > > Thanks, > > > > Howard > > > > Michel Lesoinne schrieb am Mi. 1. Feb. 2017 > um 21:07: > > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and > have been trying to run simple program. > > I configured openmpi with > > ../configure --disable-shared --prefix ~/.local > > make all install > > > > Then I have a simple code only containing a call to MPI_Init. > > I compile it with > > mpirun -np 2 ./mpitest > > > > The output is: > > > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_patcher_overwrite: File not found (ignored) > > > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_mmap: File not found (ignored) > > > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_posix: File not found (ignored) > > > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_sysv: File not found (ignored) > > > > > -- > > > > It looks like opal_init failed for some reason; your parallel process is > > > > likely to abort. There are many reasons that a parallel process can > > > > fail during opal_init; some of which are due to configuration or > > > > environment problems. This failure appears to be an internal failure; > > > > here's some additional information (which may only be relevant to an > > > > Open MPI developer): > > > > > > > > opal_shmem_base_select failed > > > > --> Returned value -1 instead of OPAL_SUCCESS > > > > > -- > > > > Without the --disable-shared in the configuration, then I get: > > > > > > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 > > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at > line 666 > > > > > -- > > > > It looks like orte_init failed for some reason; your parallel process is > > > > likely to abort. There are many reasons that a parallel process can > > > > fail during orte_init; some of which are due to configuration or > > > > environment problems. This failure appears to be an internal failure; > > > > here's some additional information (which may only be relevant to an > > > > Open MPI developer): > > > > > > > > pmix server init failed > > > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > > > > > > -- > > > > > > > > > > > > > > > > Has anyone seen this? What am I missing? > > > > ___ > > users mailing list > > users@lists.open-mpi.org > > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > ___ > > users mailing list > > users@lists.open-mpi.org > > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > -- > Jeff Squyres > jsquy...@cisco.com > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Howard, First, thanks to you and Jeff for looking into this with me. 👍 I tried ../configure --disable-shared --enable-static --prefix ~/.local The result is the same as without --disable-shared. i.e. I get the following error: [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../orte/orted/pmix/pmix_server.c at line 262 [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666 -- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): pmix server init failed --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS -- On Thu, Feb 2, 2017 at 12:29 PM, Howard Pritchard wrote: > Hi Michel > > Try adding --enable-static to the configure. > That fixed the problem for me. > > Howard > > Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um > 19:07: > >> I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and >> have been trying to run simple program. >> I configured openmpi with >> ../configure --disable-shared --prefix ~/.local >> make all install >> >> Then I have a simple code only containing a call to MPI_Init. >> I compile it with >> mpirun -np 2 ./mpitest >> >> The output is: >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_patcher_overwrite: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_mmap: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_posix: File not found (ignored) >> >> [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: >> unable to open mca_shmem_sysv: File not found (ignored) >> >> >> -- >> >> It looks like opal_init failed for some reason; your parallel process is >> >> likely to abort. There are many reasons that a parallel process can >> >> fail during opal_init; some of which are due to configuration or >> >> environment problems. This failure appears to be an internal failure; >> >> here's some additional information (which may only be relevant to an >> >> Open MPI developer): >> >> >> opal_shmem_base_select failed >> >> --> Returned value -1 instead of OPAL_SUCCESS >> >> >> -- >> >> Without the --disable-shared in the configuration, then I get: >> >> >> [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad >> parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 >> >> [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad >> parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at >> line 666 >> >> >> -- >> >> It looks like orte_init failed for some reason; your parallel process is >> >> likely to abort. There are many reasons that a parallel process can >> >> fail during orte_init; some of which are due to configuration or >> >> environment problems. This failure appears to be an internal failure; >> >> here's some additional information (which may only be relevant to an >> >> Open MPI developer): >> >> >> pmix server init failed >> >> --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS >> >> >> -- >> >> >> >> >> Has anyone seen this? What am I missing? >> ___ >> users mailing list >> users@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Hi Michel, Could you try running the app with export TMPDIR=/tmp set in the shell you are using? Howard 2017-02-02 13:46 GMT-07:00 Michel Lesoinne : Howard, First, thanks to you and Jeff for looking into this with me. 👍 I tried ../configure --disable-shared --enable-static --prefix ~/.local The result is the same as without --disable-shared. i.e. I get the following error: [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../orte/orted/pmix/pmix_server.c at line 262 [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666 -- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): pmix server init failed --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS -- On Thu, Feb 2, 2017 at 12:29 PM, Howard Pritchard wrote: Hi Michel Try adding --enable-static to the configure. That fixed the problem for me. Howard Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um 19:07: I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have been trying to run simple program. I configured openmpi with ../configure --disable-shared --prefix ~/.local make all install Then I have a simple code only containing a call to MPI_Init. I compile it with mpirun -np 2 ./mpitest The output is: [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_patcher_overwrite: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_mmap: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_posix: File not found (ignored) [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: unable to open mca_shmem_sysv: File not found (ignored) -- It looks like opal_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during opal_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_shmem_base_select failed --> Returned value -1 instead of OPAL_SUCCESS -- Without the --disable-shared in the configuration, then I get: [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 666 -- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): pmix server init failed --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS -- Has anyone seen this? What am I missing? ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
Re: [OMPI users] OpenMPI not running any job on Mac OS X 10.12
Hi Howard! Good news. This makes things work finally. Thanks. I think however that it should not be necessary, but if I have to do that every time, I guess I will 👍 On Mon, Feb 6, 2017 at 8:09 AM, Howard Pritchard wrote: > Hi Michel, > > Could you try running the app with > > export TMPDIR=/tmp > > set in the shell you are using? > > Howard > > > 2017-02-02 13:46 GMT-07:00 Michel Lesoinne : > > Howard, > > First, thanks to you and Jeff for looking into this with me. 👍 > I tried ../configure --disable-shared --enable-static --prefix ~/.local > The result is the same as without --disable-shared. i.e. I get the > following error: > > [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 262 > > [Michels-MacBook-Pro.local:92780] [[46617,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at > line 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > -- > > On Thu, Feb 2, 2017 at 12:29 PM, Howard Pritchard > wrote: > > Hi Michel > > Try adding --enable-static to the configure. > That fixed the problem for me. > > Howard > > Michel Lesoinne schrieb am Mi. 1. Feb. 2017 um > 19:07: > > I have compiled OpenMPI 2.0.2 on a new Macbook running OS X 10.12 and have > been trying to run simple program. > I configured openmpi with > ../configure --disable-shared --prefix ~/.local > make all install > > Then I have a simple code only containing a call to MPI_Init. > I compile it with > mpirun -np 2 ./mpitest > > The output is: > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_patcher_overwrite: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_mmap: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_posix: File not found (ignored) > > [Michels-MacBook-Pro.local:45101] mca_base_component_repository_open: > unable to open mca_shmem_sysv: File not found (ignored) > > -- > > It looks like opal_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during opal_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > opal_shmem_base_select failed > > --> Returned value -1 instead of OPAL_SUCCESS > > -- > > Without the --disable-shared in the configuration, then I get: > > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../orte/orted/pmix/pmix_server.c at line 264 > > [Michels-MacBook-Pro.local:68818] [[53415,0],0] ORTE_ERROR_LOG: Bad > parameter in file ../../../../../orte/mca/ess/hnp/ess_hnp_module.c at > line 666 > > -- > > It looks like orte_init failed for some reason; your parallel process is > > likely to abort. There are many reasons that a parallel process can > > fail during orte_init; some of which are due to configuration or > > environment problems. This failure appears to be an internal failure; > > here's some additional information (which may only be relevant to an > > Open MPI developer): > > > pmix server init failed > > --> Returned value Bad parameter (-5) instead of ORTE_SUCCESS > > -- > > > > > Has anyone seen this? What am I missing? > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > > ___ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > > ___ > users mailing list > users@lists.open-mpi.org > https:
