Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Sergiy Bubin]

This works too. It is probably a better solution. Thank you very much!
Sergiy

> Date: Tue, 19 Apr 2011 14:03:49 -0700
> From: n...@aol.com
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04
> 
>   On 04/19/2011 01:24 PM, Sergiy Bubin wrote:
> > /usr/include/c++/4.5/iomanip(64): error: expected an expression
> >  { return { __mask }; }
> >   ^
> > /usr/include/c++/4.5/iomanip(94): error: expected an expression
> >  { return { __mask }; }
> >   ^
> > /usr/include/c++/4.5/iomanip(125): error: expected an expression
> >  { return { __base }; }
> >   ^
> > /usr/include/c++/4.5/iomanip(193): error: expected an expression
> >  { return { __n }; }
> >   ^
> > /usr/include/c++/4.5/iomanip(223): error: expected an expression
> >  { return { __n }; }
> >   ^
> > /usr/include/c++/4.5/iomanip(163): error: expected an expression
> >{ return { __c }; }
> > ^
> >
> If you're using icpc, this seeming incompatibility  between icpc and g++ 
> 4.5 has been discussed on the icpc forum
> http://software.intel.com/en-us/forums/showthread.php?t=78677=%28iomanip%29
> where you should see that you must take care to set option -std=c++0x 
> when using current  under icpc, as it is treated as a c++0x 
> feature.  You might try adding the option to the CXXFLAGS or whatever 
> they are called in openmpi build (or to the icpc.cfg in your icpc 
> installation).
> 
> -- 
> Tim Prince
> 
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Sergiy Bubin]

Great! Everything has compiled fine. Thank you very much for your assistance! I 
would have not known what to do had I been on my own. 

Also, the -I option does work. It was my mistake, I typed 
CPPFLAGS=-I/usr/include/x86_64-linux-gnu/asm (note "/asm" in the end) when I 
did it first time, which was wrong.

Thanks again,
Sergiy



> From: r...@open-mpi.org
> Date: Tue, 19 Apr 2011 14:39:31 -0600
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04
>
>
> On Apr 19, 2011, at 2:24 PM, Sergiy Bubin wrote:
>
> >
> > Thanks for the suggestion. I have figured (by googling around and comparing 
> > the content of asm directories) that Ubuntu 11.04 has some difference in 
> > the location of /usr/include/asm/. It appears that now that whole directory 
> > is located at /usr/include/x86_64-linux-gnu/asm/.
>
> Yick!
>
> >
> > I tried to use -I but it did not work.
>
> Strange. CPPFLAGS=-I/usr/include/x86_64-linux-gnu on the configure line 
> didn't work??
>
> > Making a symbolic link
> > ln -s /usr/include/x86_64-linux-gnu/asm /usr/include/asm
> > did help to move things forward.
> >
> > But now I got another issue. After compiling for a while it gives me the 
> > following error:
>
> Looks like VampirTrace may not support 11.04 yet. Just add 
> --enable-contrib-no-build=vt to your configure line
>
>
> >
> > make[7]: Entering directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
> > icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> > -pthread -MT handler.o -MD -MP -MF .deps/handler.Tpo -c -o handler.o 
> > handler.cc
> > mv -f .deps/handler.Tpo .deps/handler.Po
> > icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> > -pthread -MT ompragma.o -MD -MP -MF .deps/ompragma.Tpo -c -o ompragma.o 
> > ompragma.cc
> > mv -f .deps/ompragma.Tpo .deps/ompragma.Po
> > icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> > -pthread -MT ompragma_c.o -MD -MP -MF .deps/ompragma_c.Tpo -c -o 
> > ompragma_c.o ompragma_c.cc
> > /usr/include/c++/4.5/iomanip(64): error: expected an expression
> > { return { __mask }; }
> > ^
> > /usr/include/c++/4.5/iomanip(94): error: expected an expression
> > { return { __mask }; }
> > ^
> > /usr/include/c++/4.5/iomanip(125): error: expected an expression
> > { return { __base }; }
> > ^
> > /usr/include/c++/4.5/iomanip(193): error: expected an expression
> > { return { __n }; }
> > ^
> > /usr/include/c++/4.5/iomanip(223): error: expected an expression
> > { return { __n }; }
> > ^
> > /usr/include/c++/4.5/iomanip(163): error: expected an expression
> > { return { __c }; }
> > ^
> > compilation aborted for ompragma_c.cc (code 2)
> > make[7]: *** [ompragma_c.o] Error 2
> > make[7]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
> > make[6]: *** [all-recursive] Error 1
> > make[6]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari'
> > make[5]: *** [all-recursive] Error 1
> > make[5]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools'
> > make[4]: *** [all-recursive] Error 1
> > make[4]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
> > make[3]: *** [all] Error 2
> > make[3]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory 
> > `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt'
> > make[1]: *** [all-recursive] Error 1
> > make[1]: Leaving directory `/home2/bubin/Software/openmpi-1.4.3/ompi'
> > make: *** [all-recursive] Error 1
> >
> > I am not sure how to deal with that. Any advice is appreciated.
> >
> > Sergiy
> >
> > 
> >> From: r...@open-mpi.org
> >> Date: Tue, 19 Apr 2011 11:35:48 -0600
> >> To: us...@open-mpi.org
> >> Subject: Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04
> >>
> >> Nothing was attached, but I doubt they would help anyway. This looks like 
> >> a missing header file in Ubuntu, or else one that got moved and needs a 
> >> different path.
> >>
> >> Where is asm/errno.h, and how was it included in 
> >> /usr/include/linux/errno.h? Best I can figure is it got put in some 
> >> non-stan

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Tim Prince]

 On 04/19/2011 01:24 PM, Sergiy Bubin wrote:

/usr/include/c++/4.5/iomanip(64): error: expected an expression
 { return { __mask }; }
  ^
/usr/include/c++/4.5/iomanip(94): error: expected an expression
 { return { __mask }; }
  ^
/usr/include/c++/4.5/iomanip(125): error: expected an expression
 { return { __base }; }
  ^
/usr/include/c++/4.5/iomanip(193): error: expected an expression
 { return { __n }; }
  ^
/usr/include/c++/4.5/iomanip(223): error: expected an expression
 { return { __n }; }
  ^
/usr/include/c++/4.5/iomanip(163): error: expected an expression
   { return { __c }; }
^

If you're using icpc, this seeming incompatibility  between icpc and g++ 
4.5 has been discussed on the icpc forum

http://software.intel.com/en-us/forums/showthread.php?t=78677=%28iomanip%29
where you should see that you must take care to set option -std=c++0x 
when using current  under icpc, as it is treated as a c++0x 
feature.  You might try adding the option to the CXXFLAGS or whatever 
they are called in openmpi build (or to the icpc.cfg in your icpc 
installation).


--
Tim Prince

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Ralph Castain]

On Apr 19, 2011, at 2:24 PM, Sergiy Bubin wrote:

> 
> Thanks for the suggestion. I have figured (by googling around and comparing 
> the content of asm directories) that Ubuntu 11.04 has some difference in the 
> location of /usr/include/asm/. It appears that now that whole directory is 
> located at /usr/include/x86_64-linux-gnu/asm/.

Yick!

> 
> I tried to use -I but it did not work.

Strange. CPPFLAGS=-I/usr/include/x86_64-linux-gnu on the configure line didn't 
work??

> Making a symbolic link 
> ln  -s  /usr/include/x86_64-linux-gnu/asm  /usr/include/asm
> did help to move things forward.
> 
> But now I got another issue. After compiling for a while it gives me the 
> following error:

Looks like VampirTrace may not support 11.04 yet. Just add 
--enable-contrib-no-build=vt to your configure line


> 
> make[7]: Entering directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
> icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> -pthread -MT handler.o -MD -MP -MF .deps/handler.Tpo -c -o handler.o 
> handler.cc
> mv -f .deps/handler.Tpo .deps/handler.Po
> icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> -pthread -MT ompragma.o -MD -MP -MF .deps/ompragma.Tpo -c -o ompragma.o 
> ompragma.cc
> mv -f .deps/ompragma.Tpo .deps/ompragma.Po
> icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
> -pthread -MT ompragma_c.o -MD -MP -MF .deps/ompragma_c.Tpo -c -o ompragma_c.o 
> ompragma_c.cc
> /usr/include/c++/4.5/iomanip(64): error: expected an expression
> { return { __mask }; }
>  ^
> /usr/include/c++/4.5/iomanip(94): error: expected an expression
> { return { __mask }; }
>  ^
> /usr/include/c++/4.5/iomanip(125): error: expected an expression
> { return { __base }; }
>  ^
> /usr/include/c++/4.5/iomanip(193): error: expected an expression
> { return { __n }; }
>  ^
> /usr/include/c++/4.5/iomanip(223): error: expected an expression
> { return { __n }; }
>  ^
> /usr/include/c++/4.5/iomanip(163): error: expected an expression
>   { return { __c }; }
>^
> compilation aborted for ompragma_c.cc (code 2)
> make[7]: *** [ompragma_c.o] Error 2
> make[7]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
> make[6]: *** [all-recursive] Error 1
> make[6]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari'
> make[5]: *** [all-recursive] Error 1
> make[5]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools'
> make[4]: *** [all-recursive] Error 1
> make[4]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
> make[3]: *** [all] Error 2
> make[3]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory 
> `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home2/bubin/Software/openmpi-1.4.3/ompi'
> make: *** [all-recursive] Error 1
> 
> I am not sure how to deal with that. Any advice is appreciated.
> 
> Sergiy
> 
> 
>> From: r...@open-mpi.org
>> Date: Tue, 19 Apr 2011 11:35:48 -0600
>> To: us...@open-mpi.org
>> Subject: Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04
>> 
>> Nothing was attached, but I doubt they would help anyway. This looks like a 
>> missing header file in Ubuntu, or else one that got moved and needs a 
>> different path.
>> 
>> Where is asm/errno.h, and how was it included in /usr/include/linux/errno.h? 
>> Best I can figure is it got put in some non-standard place, and you'll need 
>> to add a -I to your CPPFLAGS to find it.
>> 
>> 
>> On Apr 19, 2011, at 10:52 AM, Sergiy Bubin wrote:
>> 
>>> 
>>> Hi all,
>>> 
>>> I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0 
>>> update 2) on my new computer (Ubuntu 11.04 beta2). While running 
>>> ./configure script seems to be fine, make all generates an error almost at 
>>> the very beginning (see the attached output_make_all.txt file). For 
>>> completeness I am also attaching configure.log file.
>>> 
>>> I am not sure what that error means:
>>> 
>>> make[3]: Entering directory 
>>> `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
>>> /bin/bash ./libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. 
>>> -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilib

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Sergiy Bubin]

Thanks for the suggestion. I have figured (by googling around and comparing the 
content of asm directories) that Ubuntu 11.04 has some difference in the 
location of /usr/include/asm/. It appears that now that whole directory is 
located at /usr/include/x86_64-linux-gnu/asm/.

I tried to use -I but it did not work. Making a symbolic link 
ln  -s  /usr/include/x86_64-linux-gnu/asm  /usr/include/asm
did help to move things forward.

But now I got another issue. After compiling for a while it gives me the 
following error:

make[7]: Entering directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
-pthread -MT handler.o -MD -MP -MF .deps/handler.Tpo -c -o handler.o handler.cc
mv -f .deps/handler.Tpo .deps/handler.Po
icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
-pthread -MT ompragma.o -MD -MP -MF .deps/ompragma.Tpo -c -o ompragma.o 
ompragma.cc
mv -f .deps/ompragma.Tpo .deps/ompragma.Po
icpc -DHAVE_CONFIG_H -I. -I../../.. -O3 -DNDEBUG -finline-functions 
-pthread -MT ompragma_c.o -MD -MP -MF .deps/ompragma_c.Tpo -c -o ompragma_c.o 
ompragma_c.cc
/usr/include/c++/4.5/iomanip(64): error: expected an expression
    { return { __mask }; }
 ^
/usr/include/c++/4.5/iomanip(94): error: expected an expression
    { return { __mask }; }
 ^
/usr/include/c++/4.5/iomanip(125): error: expected an expression
    { return { __base }; }
 ^
/usr/include/c++/4.5/iomanip(193): error: expected an expression
    { return { __n }; }
 ^
/usr/include/c++/4.5/iomanip(223): error: expected an expression
    { return { __n }; }
 ^
/usr/include/c++/4.5/iomanip(163): error: expected an expression
  { return { __c }; }
   ^
compilation aborted for ompragma_c.cc (code 2)
make[7]: *** [ompragma_c.o] Error 2
make[7]: Leaving directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari/tool'
make[6]: *** [all-recursive] Error 1
make[6]: Leaving directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools/opari'
make[5]: *** [all-recursive] Error 1
make[5]: Leaving directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt/tools'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
make[3]: *** [all] Error 2
make[3]: Leaving directory 
`/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt/vt'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home2/bubin/Software/openmpi-1.4.3/ompi/contrib/vt'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home2/bubin/Software/openmpi-1.4.3/ompi'
make: *** [all-recursive] Error 1

I am not sure how to deal with that. Any advice is appreciated.

Sergiy


> From: r...@open-mpi.org
> Date: Tue, 19 Apr 2011 11:35:48 -0600
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04
>
> Nothing was attached, but I doubt they would help anyway. This looks like a 
> missing header file in Ubuntu, or else one that got moved and needs a 
> different path.
>
> Where is asm/errno.h, and how was it included in /usr/include/linux/errno.h? 
> Best I can figure is it got put in some non-standard place, and you'll need 
> to add a -I to your CPPFLAGS to find it.
>
>
> On Apr 19, 2011, at 10:52 AM, Sergiy Bubin wrote:
>
> >
> > Hi all,
> >
> > I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0 
> > update 2) on my new computer (Ubuntu 11.04 beta2). While running 
> > ./configure script seems to be fine, make all generates an error almost at 
> > the very beginning (see the attached output_make_all.txt file). For 
> > completeness I am also attaching configure.log file.
> >
> > I am not sure what that error means:
> >
> > make[3]: Entering directory 
> > `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
> > /bin/bash ./libtool --tag=CC --mode=compile icc -DHAVE_CONFIG_H -I. 
> > -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -O3 
> > -DNDEBUG -fvisibility=hidden -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c 
> > -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
> > libtool: compile: icc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. 
> > -Ilibltdl -I./libltdl -I./libltdl -O3 -DNDEBUG -fvisibility=hidden -MT 
> > dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -fPIC -DPIC -o 
> > .libs/dlopen.o
> > /usr/include/linux/errno.h(4): catastrophic error: cannot open source file 
> > "asm/errno.h"
> > #include
> >
> > I have just tried to compile the same version of OpenMPI with Intel 12.0 on 
> > another machine ru

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[David Zhang]

why can't you install mpi through apt-get?

On Tue, Apr 19, 2011 at 10:37 AM, Jeff Squyres  wrote:

> Sounds like you have a busted compiler install on this machine -- if
> /usr/include/linux/errno.h cannot find /usr/include/asm/errno.h, then
> something is wrong on that machine.
>
>
> On Apr 19, 2011, at 12:52 PM, Sergiy Bubin wrote:
>
> >
> > Hi all,
> >
> > I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0
> update 2) on my new computer (Ubuntu 11.04 beta2). While running ./configure
> script seems to be fine, make all generates an error almost at the very
> beginning (see the attached output_make_all.txt file). For completeness I am
> also attaching configure.log file.
> >
> > I am not sure what that error means:
> >
> > make[3]: Entering directory
> `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
> > /bin/bash ./libtool  --tag=CC   --mode=compile icc -DHAVE_CONFIG_H -I.
>  -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -O3
> -DNDEBUG   -fvisibility=hidden -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c
> -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
> > libtool: compile:  icc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I.
> -I. -Ilibltdl -I./libltdl -I./libltdl -O3 -DNDEBUG -fvisibility=hidden -MT
> dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c  -fPIC -DPIC -o
> .libs/dlopen.o
> > /usr/include/linux/errno.h(4): catastrophic error: cannot open source
> file "asm/errno.h"
> >  #include
> >
> > I have just tried to compile the same version of OpenMPI with Intel 12.0
> on another machine running Ubuntu 9.10 and it went just fine. Also, I
> recently did it on two other systems running Ubuntu 10.04 and 10.10. Again,
> no problems we encountered. If anyone could shed some light on my issue that
> would be very much appreciated.
> >
> > Thanks,
> > Sergiy
> >
> >
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>



-- 
David Zhang
University of California, San Diego

Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Jeff Squyres]

Sounds like you have a busted compiler install on this machine -- if 
/usr/include/linux/errno.h cannot find /usr/include/asm/errno.h, then something 
is wrong on that machine.


On Apr 19, 2011, at 12:52 PM, Sergiy Bubin wrote:

> 
> Hi all,
> 
> I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0 
> update 2) on my new computer (Ubuntu 11.04 beta2). While running ./configure 
> script seems to be fine, make all generates an error almost at the very 
> beginning (see the attached output_make_all.txt file). For completeness I am 
> also attaching configure.log file.
> 
> I am not sure what that error means:
> 
> make[3]: Entering directory `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
> /bin/bash ./libtool  --tag=CC   --mode=compile icc -DHAVE_CONFIG_H -I.  
> -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -O3 
> -DNDEBUG   -fvisibility=hidden -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c 
> -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
> libtool: compile:  icc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. 
> -Ilibltdl -I./libltdl -I./libltdl -O3 -DNDEBUG -fvisibility=hidden -MT 
> dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c  -fPIC -DPIC -o 
> .libs/dlopen.o
> /usr/include/linux/errno.h(4): catastrophic error: cannot open source file 
> "asm/errno.h"
>  #include 
> 
> I have just tried to compile the same version of OpenMPI with Intel 12.0 on 
> another machine running Ubuntu 9.10 and it went just fine. Also, I recently 
> did it on two other systems running Ubuntu 10.04 and 10.10. Again, no 
> problems we encountered. If anyone could shed some light on my issue that 
> would be very much appreciated.
> 
> Thanks,
> Sergiy
> 
> 
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users


-- 
Jeff Squyres
jsquy...@cisco.com
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Re: [OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Ralph Castain]

Nothing was attached, but I doubt they would help anyway. This looks like a 
missing header file in Ubuntu, or else one that got moved and needs a different 
path.

Where is asm/errno.h, and how was it included in /usr/include/linux/errno.h? 
Best I can figure is it got put in some non-standard place, and you'll need to 
add a -I to your CPPFLAGS to find it.


On Apr 19, 2011, at 10:52 AM, Sergiy Bubin wrote:

> 
> Hi all,
> 
> I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0 
> update 2) on my new computer (Ubuntu 11.04 beta2). While running ./configure 
> script seems to be fine, make all generates an error almost at the very 
> beginning (see the attached output_make_all.txt file). For completeness I am 
> also attaching configure.log file.
> 
> I am not sure what that error means:
> 
> make[3]: Entering directory `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
> /bin/bash ./libtool  --tag=CC   --mode=compile icc -DHAVE_CONFIG_H -I.  
> -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -O3 
> -DNDEBUG   -fvisibility=hidden -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c 
> -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
> libtool: compile:  icc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. 
> -Ilibltdl -I./libltdl -I./libltdl -O3 -DNDEBUG -fvisibility=hidden -MT 
> dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c  -fPIC -DPIC -o 
> .libs/dlopen.o
> /usr/include/linux/errno.h(4): catastrophic error: cannot open source file 
> "asm/errno.h"
>  #include 
> 
> I have just tried to compile the same version of OpenMPI with Intel 12.0 on 
> another machine running Ubuntu 9.10 and it went just fine. Also, I recently 
> did it on two other systems running Ubuntu 10.04 and 10.10. Again, no 
> problems we encountered. If anyone could shed some light on my issue that 
> would be very much appreciated.
> 
> Thanks,
> Sergiy
> 
> 
> ___
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users

[OMPI users] Problem compiling OpenMPI on Ubuntu 11.04

[Sergiy Bubin]

Hi all,

I am trying to compile OpenMPI 1.4.3 with Intel compilers (version 12.0 update 
2) on my new computer (Ubuntu 11.04 beta2). While running ./configure script 
seems to be fine, make all generates an error almost at the very beginning (see 
the attached output_make_all.txt file). For completeness I am also attaching 
configure.log file.

I am not sure what that error means:

make[3]: Entering directory `/home2/bubin/Software/openmpi-1.4.3/opal/libltdl'
/bin/bash ./libtool  --tag=CC   --mode=compile icc -DHAVE_CONFIG_H -I.  
-DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl   -O3 
-DNDEBUG   -fvisibility=hidden -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o 
dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
libtool: compile:  icc -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. 
-Ilibltdl -I./libltdl -I./libltdl -O3 -DNDEBUG -fvisibility=hidden -MT 
dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c  -fPIC -DPIC -o 
.libs/dlopen.o
/usr/include/linux/errno.h(4): catastrophic error: cannot open source file 
"asm/errno.h"
  #include 

I have just tried to compile the same version of OpenMPI with Intel 12.0 on 
another machine running Ubuntu 9.10 and it went just fine. Also, I recently did 
it on two other systems running Ubuntu 10.04 and 10.10. Again, no problems we 
encountered. If anyone could shed some light on my issue that would be very 
much appreciated.

Thanks,
Sergiy