Re: [OMPI users] Trouble compiling 1.4.3 with PGI 10.9 compilers
Just out of curiosity, does Open MPI 1.5.4 build properly? We've seen problems with the PGI compiler suite before -- it *does* look like a problem with libtool-building issues; e.g., a switch is too old or is missing or something. Meaning: it looks like PGI thinks it's trying to build an application, not a library. This is usually bit rot in libtool (i.e., PGI may have changed their options, but we're using an older Libtool in the 1.4.x series that doesn't know about this option). I do note that we fixed some libtool issues in the 1.4.4 tarball; could you try the 1.4.4rc and see if that fixes the issue? If not, we might have missed some patches to bring over to the v1.4 branch. http://www.open-mpi.org/software/ompi/v1.4/ On Sep 20, 2011, at 1:16 PM, Blosch, Edwin L wrote: > I'm having trouble building 1.4.3 using PGI 10.9. I searched the list > archives briefly but I didn't stumble across anything that looked like the > same problem, so I thought I'd ask if an expert might recognize the nature of > the problem here. > > The configure command: > > ./configure --prefix=/release/openmpi-pgi --without-tm --without-sge > --enable-mpirun-prefix-by-default --enable-contrib-no-build=vt > --enable-mca-no-build=maffinity --disable-per-user-config-files > --disable-io-romio --with-mpi-f90-size=small --enable-static --disable-shared > --with-wrapper-cflags=-Msignextend --with-wrapper-cxxflags=-Msignextend > CXX=/appserv/pgi/linux86-64/10.9/bin/pgCC > CC=/appserv/pgi/linux86-64/10.9/bin/pgcc 'CFLAGS= -O2 -Mcache_align -Minfo > -Msignextend -Msignextend' 'CXXFLAGS= -O2 -Mcache_align -Minfo -Msignextend > -Msignextend' F77=/appserv/pgi/linux86-64/10.9/bin/pgf95 > 'FFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical' > FC=/appserv/pgi/linux86-64/10.9/bin/pgf95 'FCFLAGS=-D_GNU_SOURCE -O2 > -Mcache_align -Minfo -Munixlogical' 'LDFLAGS= -Bstatic_pgi' > > The place where the build eventually dies: > > /bin/sh ../../../libtool --tag=CXX --mode=link > /appserv/pgi/linux86-64/10.9/bin/pgCC -DNDEBUG -O2 -Mcache_align -Minfo > -Msignextend -Msignextend -version-info 0:1:0 -export-dynamic -Bstatic_pgi > -o libmpi_cxx.la -rpath /release/cfd/openmpi-pgi/lib mpicxx.lo intercepts.lo > comm.lo datatype.lo win.lo file.lo ../../../ompi/libmpi.la -lnsl -lutil > -lpthread > libtool: link: tpldir=Template.dir > libtool: link: rm -rf Template.dir > libtool: link: /appserv/pgi/linux86-64/10.9/bin/pgCC --prelink_objects > --instantiation_dir Template.dir mpicxx.o intercepts.o comm.o datatype.o > win.o file.o > pgCC-Warning-prelink_objects switch is deprecated > pgCC-Warning-instantiation_dir switch is deprecated > /usr/lib64/crt1.o: In function `_start': > /usr/src/packages/BUILD/glibc-2.9/csu/../sysdeps/x86_64/elf/start.S:109: > undefined reference to `main' > mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': > (.text+0x49): undefined reference to `ompi_mpi_errors_are_fatal' > mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': > (.text+0x62): undefined reference to `ompi_mpi_errors_return' > mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': > (.text+0x7b): undefined reference to `ompi_mpi_errors_throw_exceptions' > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
Re: [OMPI users] Trouble compiling 1.4.3 with PGI 10.9 compilers
Follow-up #1: I tried using the autogen.sh script referenced here https://svn.open-mpi.org/trac/ompi/changeset/22274 but that did not resolve the build problem. Follow-up #2: configuring with --disable-mpi-cxx does allow the compilation to succeed. Perhaps that's obvious, but I had to check. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Blosch, Edwin L Sent: Tuesday, September 20, 2011 12:17 PM To: Open MPI Users Subject: EXTERNAL: [OMPI users] Trouble compiling 1.4.3 with PGI 10.9 compilers I'm having trouble building 1.4.3 using PGI 10.9. I searched the list archives briefly but I didn't stumble across anything that looked like the same problem, so I thought I'd ask if an expert might recognize the nature of the problem here. The configure command: ./configure --prefix=/release/openmpi-pgi --without-tm --without-sge --enable-mpirun-prefix-by-default --enable-contrib-no-build=vt --enable-mca-no-build=maffinity --disable-per-user-config-files --disable-io-romio --with-mpi-f90-size=small --enable-static --disable-shared --with-wrapper-cflags=-Msignextend --with-wrapper-cxxflags=-Msignextend CXX=/appserv/pgi/linux86-64/10.9/bin/pgCC CC=/appserv/pgi/linux86-64/10.9/bin/pgcc 'CFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend' 'CXXFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend' F77=/appserv/pgi/linux86-64/10.9/bin/pgf95 'FFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical' FC=/appserv/pgi/linux86-64/10.9/bin/pgf95 'FCFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical' 'LDFLAGS= -Bstatic_pgi' The place where the build eventually dies: /bin/sh ../../../libtool --tag=CXX --mode=link /appserv/pgi/linux86-64/10.9/bin/pgCC -DNDEBUG -O2 -Mcache_align -Minfo -Msignextend -Msignextend -version-info 0:1:0 -export-dynamic -Bstatic_pgi -o libmpi_cxx.la -rpath /release/cfd/openmpi-pgi/lib mpicxx.lo intercepts.lo comm.lo datatype.lo win.lo file.lo ../../../ompi/libmpi.la -lnsl -lutil -lpthread libtool: link: tpldir=Template.dir libtool: link: rm -rf Template.dir libtool: link: /appserv/pgi/linux86-64/10.9/bin/pgCC --prelink_objects --instantiation_dir Template.dir mpicxx.o intercepts.o comm.o datatype.o win.o file.o pgCC-Warning-prelink_objects switch is deprecated pgCC-Warning-instantiation_dir switch is deprecated /usr/lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.9/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x49): undefined reference to `ompi_mpi_errors_are_fatal' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x62): undefined reference to `ompi_mpi_errors_return' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x7b): undefined reference to `ompi_mpi_errors_throw_exceptions' ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
[OMPI users] Trouble compiling 1.4.3 with PGI 10.9 compilers
I'm having trouble building 1.4.3 using PGI 10.9. I searched the list archives briefly but I didn't stumble across anything that looked like the same problem, so I thought I'd ask if an expert might recognize the nature of the problem here. The configure command: ./configure --prefix=/release/openmpi-pgi --without-tm --without-sge --enable-mpirun-prefix-by-default --enable-contrib-no-build=vt --enable-mca-no-build=maffinity --disable-per-user-config-files --disable-io-romio --with-mpi-f90-size=small --enable-static --disable-shared --with-wrapper-cflags=-Msignextend --with-wrapper-cxxflags=-Msignextend CXX=/appserv/pgi/linux86-64/10.9/bin/pgCC CC=/appserv/pgi/linux86-64/10.9/bin/pgcc 'CFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend' 'CXXFLAGS= -O2 -Mcache_align -Minfo -Msignextend -Msignextend' F77=/appserv/pgi/linux86-64/10.9/bin/pgf95 'FFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical' FC=/appserv/pgi/linux86-64/10.9/bin/pgf95 'FCFLAGS=-D_GNU_SOURCE -O2 -Mcache_align -Minfo -Munixlogical' 'LDFLAGS= -Bstatic_pgi' The place where the build eventually dies: /bin/sh ../../../libtool --tag=CXX --mode=link /appserv/pgi/linux86-64/10.9/bin/pgCC -DNDEBUG -O2 -Mcache_align -Minfo -Msignextend -Msignextend -version-info 0:1:0 -export-dynamic -Bstatic_pgi -o libmpi_cxx.la -rpath /release/cfd/openmpi-pgi/lib mpicxx.lo intercepts.lo comm.lo datatype.lo win.lo file.lo ../../../ompi/libmpi.la -lnsl -lutil -lpthread libtool: link: tpldir=Template.dir libtool: link: rm -rf Template.dir libtool: link: /appserv/pgi/linux86-64/10.9/bin/pgCC --prelink_objects --instantiation_dir Template.dir mpicxx.o intercepts.o comm.o datatype.o win.o file.o pgCC-Warning-prelink_objects switch is deprecated pgCC-Warning-instantiation_dir switch is deprecated /usr/lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.9/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x49): undefined reference to `ompi_mpi_errors_are_fatal' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x62): undefined reference to `ompi_mpi_errors_return' mpicxx.o: In function `__sti___9_mpicxx_cc_a6befbec': (.text+0x7b): undefined reference to `ompi_mpi_errors_throw_exceptions'
