Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Hi All. I was away all of last week so I am late here. A note that I was able to compile OpenMP 1.6.3 with gcc 4.7.2 successfully. I built gcc 4.7.2 by hand with binutils-2.23.1, mpc-1.0.1, mpfr-3.1.1 and gmp-5.0.5. Joseph On 12/6/2012 2:37 PM, Paul Hatton wrote: Thanks. This is obviously (now) a problem with my gcc build which isn't appropriate for this list. I'll re-visit this and post a solution once I've (hopefully) got this working. I don't have any shared libraries (*.so.*) in my gcc tree so something went badly wrong ... Thanks for your help.
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Thanks. This is obviously (now) a problem with my gcc build which isn't appropriate for this list. I'll re-visit this and post a solution once I've (hopefully) got this working. I don't have any shared libraries (*.so.*) in my gcc tree so something went badly wrong ... Thanks for your help. -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Gunter, David O > Sent: 06 December 2012 22:27 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > My gcc 4.7.2 build appears to be ignoring the one in /usr/lib64 and > using the one in its own install tree: > /usr/projects/hpcsoft/moonlight/gcc/4.7.2/lib64/libgfortran.so.3 > > -david > > -- > David Gunter > HPC-3: Infrastructure Team > Los Alamos National Laboratory > > > > > On Dec 6, 2012, at 2:50 PM, Paul Hatton wrote: > > > Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is > older than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking > at my gcc installation I don't have any shared libraries in there, just > static ones. > > > > David - if you don't mind a slight diversion, where is your > libgfortran.so.3? Does your system have one in /usr/lib64 (assuming > you're on a 64-bit system) or in > /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? > > > > I'll have a play with my setup as well. Should have spotted this > myself. > > > > Thanks for your help > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -Original Message- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 21:30 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> It looks like your gfortran compiler is broken...? > >> > >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9)) > >> configure:53507: gfortran -o conftest conftestf.f90 > >> configure:53514: $? = 0 > >> configure:53554: ./conftest > >> ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not > >> found (required by ./conftest) > >> configure:53561: $? = 1 > >> > >> > >> > >> On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: > >> > >>> failed one attached. > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> > >>>> -Original Message- > >>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- > mpi.org] > >> On > >>>> Behalf Of Jeff Squyres > >>>> Sent: 06 December 2012 21:17 > >>>> To: Open MPI Users > >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >>>> 4.7.2 > >>>> > >>>> This does not appear to be the right config.log -- the test in > >> question > >>>> passed: > >>>> > >>>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >>>> (selected_int_kind(9)) > >>>> configure:53507: gfortran -o conftest conftestf.f90 > >>>> configure:53514: $? = 0 > >>>> > >>>> > >>>> > >>>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > >>>> > >>>>> Thanks. zip-ed config.log attached > >>>>> > >>>>> -- > &
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
My gcc 4.7.2 build appears to be ignoring the one in /usr/lib64 and using the one in its own install tree: /usr/projects/hpcsoft/moonlight/gcc/4.7.2/lib64/libgfortran.so.3 -david -- David Gunter HPC-3: Infrastructure Team Los Alamos National Laboratory On Dec 6, 2012, at 2:50 PM, Paul Hatton wrote: > Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is older > than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking at my gcc > installation I don't have any shared libraries in there, just static ones. > > David - if you don't mind a slight diversion, where is your libgfortran.so.3? > Does your system have one in /usr/lib64 (assuming you're on a 64-bit system) > or in /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? > > I'll have a play with my setup as well. Should have spotted this myself. > > Thanks for your help > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > >> -Original Message- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On >> Behalf Of Jeff Squyres >> Sent: 06 December 2012 21:30 >> To: Open MPI Users >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >> 4.7.2 >> >> It looks like your gfortran compiler is broken...? >> >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND >> (selected_int_kind(9)) >> configure:53507: gfortran -o conftest conftestf.f90 >> configure:53514: $? = 0 >> configure:53554: ./conftest >> ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not >> found (required by ./conftest) >> configure:53561: $? = 1 >> >> >> >> On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: >> >>> failed one attached. >>> >>> -- >>> Paul Hatton >>> High Performance Computing and Visualisation Specialist >>> IT Services, The University of Birmingham >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>> [Service Manager, Birmingham Environment for Academic Research] >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>> >>> >>>> -Original Message- >>>> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] >> On >>>> Behalf Of Jeff Squyres >>>> Sent: 06 December 2012 21:17 >>>> To: Open MPI Users >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >>>> 4.7.2 >>>> >>>> This does not appear to be the right config.log -- the test in >> question >>>> passed: >>>> >>>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND >>>> (selected_int_kind(9)) >>>> configure:53507: gfortran -o conftest conftestf.f90 >>>> configure:53514: $? = 0 >>>> >>>> >>>> >>>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: >>>> >>>>> Thanks. zip-ed config.log attached >>>>> >>>>> -- >>>>> Paul Hatton >>>>> High Performance Computing and Visualisation Specialist >>>>> IT Services, The University of Birmingham >>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>>>> [Service Manager, Birmingham Environment for Academic Research] >>>>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>>>> >>>>> >>>>>> -Original Message- >>>>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- >> mpi.org] >>>> On >>>>>> Behalf Of Jeff Squyres >>>>>> Sent: 06 December 2012 20:54 >>>>>> To: Open MPI Users >>>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >>>>>> 4.7.2 >>>>>> >>>>>> I have not tested with gfortran 4.7.2. >>>>>> >>>>>> Can you send the config.log file? (please compress) >>>>>> >>>>>> >>>>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: >>>>>> >>>>>>> I've searched the FAQ but not come up with anything about this >> ... >&
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is older than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking at my gcc installation I don't have any shared libraries in there, just static ones. David - if you don't mind a slight diversion, where is your libgfortran.so.3? Does your system have one in /usr/lib64 (assuming you're on a 64-bit system) or in /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere? I'll have a play with my setup as well. Should have spotted this myself. Thanks for your help -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: 06 December 2012 21:30 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > It looks like your gfortran compiler is broken...? > > configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9)) > configure:53507: gfortran -o conftest conftestf.f90 > configure:53514: $? = 0 > configure:53554: ./conftest > ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not > found (required by ./conftest) > configure:53561: $? = 1 > > > > On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: > > > failed one attached. > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -Original Message- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 21:17 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> This does not appear to be the right config.log -- the test in > question > >> passed: > >> > >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9)) > >> configure:53507: gfortran -o conftest conftestf.f90 > >> configure:53514: $? = 0 > >> > >> > >> > >> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > >> > >>> Thanks. zip-ed config.log attached > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> > >>>> -Original Message- > >>>> From: users-boun...@open-mpi.org [mailto:users-bounces@open- > mpi.org] > >> On > >>>> Behalf Of Jeff Squyres > >>>> Sent: 06 December 2012 20:54 > >>>> To: Open MPI Users > >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >>>> 4.7.2 > >>>> > >>>> I have not tested with gfortran 4.7.2. > >>>> > >>>> Can you send the config.log file? (please compress) > >>>> > >>>> > >>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > >>>> > >>>>> I've searched the FAQ but not come up with anything about this > ... > >>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I > >>>>> > >>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > >>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > >>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ > >>>>> --with-openib \ > >>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > >>>>> > >>>>> configure fails with > >>>>> > >>>>> checking Fortran 90 kind of MPI_INTEGER_KIND > >>>> (selected_int_kind(9))... > >>>>> configure: error: Could not determi
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Mine was with a non-default-location gcc-4.7.2 as well. $which gfortran /usr/projects/hpcsoft/moonlight/gcc/4.7.2/bin/gfortran $ gfortran --version GNU Fortran (GCC) 4.7.2 Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING -david -- David Gunter HPC-3: Infrastructure Team Los Alamos National Laboratory On Dec 6, 2012, at 2:18 PM, Paul Hatton wrote: > Thanks. Is this with gcc in the default location (/usr/bin/gcc) or elsewhere? > It may not be relevant, but I built v4.7.2 and installed it outside of the > system area: > > [appmaint@bb2login04 openmpi-1.6.3]$ which gcc > /gpfs/apps/gcc/v4.7.2/bin/gcc > [appmaint@bb2login04 openmpi-1.6.3]$ gcc -v > Using built-in specs. > COLLECT_GCC=gcc > COLLECT_LTO_WRAPPER=/gpfs/apps/gcc/v4.7.2/libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/lto-wrapper > Target: x86_64-unknown-linux-gnu > Configured with: ./configure --prefix=/gpfs/apps/gcc/v4.7.2 --disable-multilib > Thread model: posix > gcc version 4.7.2 (GCC) > [appmaint@bb2login04 openmpi-1.6.3]$ module unload apps/gcc > [appmaint@bb2login04 openmpi-1.6.3]$ which gcc > /usr/bin/gcc > > clutching at straws a bit here ... but I have built it with Intel 2013.0.079 > which is also installed in the applications area and loaded with a module. > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > >> -Original Message- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On >> Behalf Of Gunter, David O >> Sent: 06 December 2012 21:06 >> To: Open MPI Users >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >> 4.7.2 >> >> I just tried with the following: >> >> $ gcc --version >> gcc (GCC) 4.7.2 >> Copyright (C) 2012 Free Software Foundation, Inc. >> This is free software; see the source for copying conditions. There is >> NO >> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >> PURPOSE. >> >> $ ./configure --prefix=/tmp/dog/openmpi/1.6.3-gcc-4.7.2 F77=gfortran >> FC=gfortran CC=gcc CXX=c++ --with- >> platform=contrib/platform/lanl/tlcc2/optimized-panasas 2>&1 | tee >> test.log >> >> configure completed without error as did the subsequent make. >> >> Here's the relevant part of the configure output: >> >> ... >> checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... >> 4 >> checking Fortran 90 kind of MPI_ADDRESS_KIND (selected_int_kind(18))... >> 8 >> checking Fortran 90 kind of MPI_OFFSET_KIND (selected_int_kind(18))... >> (cached) 8 >> ... >> >> -- >> David Gunter >> HPC-3: Infrastructure Team >> Los Alamos National Laboratory >> >> >> >> >> On Dec 6, 2012, at 1:42 PM, Paul Hatton wrote: >> >>> I've searched the FAQ but not come up with anything about this ... >> with OpenMPI 1.6.3 and gcc 4.7.2, when I >>> >>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ >>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ >>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ >>> --with-openib \ >>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log >>> >>> configure fails with >>> >>> checking Fortran 90 kind of MPI_INTEGER_KIND >> (selected_int_kind(9))... >>> configure: error: Could not determine kind of >> selected_int_kind(MPI_INTEGER_KIND) >>> >>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel >> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is >> 4.4.6 >>> >>> I've attached the output from the configure command. >>> >>> Thanks >>> >>> -- >>> Paul Hatton >>> High Performance Computing and Visualisation Specialist >>> IT Services, The University of Birmingham >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>> [Service Manager, Birmingham Environment for Academic Research] >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>> >>> > 12_12_06_19h48m.log>___ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
It looks like your gfortran compiler is broken...? configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9)) configure:53507: gfortran -o conftest conftestf.f90 configure:53514: $? = 0 configure:53554: ./conftest ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by ./conftest) configure:53561: $? = 1 On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote: > failed one attached. > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > >> -Original Message- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On >> Behalf Of Jeff Squyres >> Sent: 06 December 2012 21:17 >> To: Open MPI Users >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >> 4.7.2 >> >> This does not appear to be the right config.log -- the test in question >> passed: >> >> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND >> (selected_int_kind(9)) >> configure:53507: gfortran -o conftest conftestf.f90 >> configure:53514: $? = 0 >> >> >> >> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: >> >>> Thanks. zip-ed config.log attached >>> >>> -- >>> Paul Hatton >>> High Performance Computing and Visualisation Specialist >>> IT Services, The University of Birmingham >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>> [Service Manager, Birmingham Environment for Academic Research] >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>> >>> >>>> -Original Message- >>>> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] >> On >>>> Behalf Of Jeff Squyres >>>> Sent: 06 December 2012 20:54 >>>> To: Open MPI Users >>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >>>> 4.7.2 >>>> >>>> I have not tested with gfortran 4.7.2. >>>> >>>> Can you send the config.log file? (please compress) >>>> >>>> >>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: >>>> >>>>> I've searched the FAQ but not come up with anything about this ... >>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I >>>>> >>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ >>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ >>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ >>>>> --with-openib \ >>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log >>>>> >>>>> configure fails with >>>>> >>>>> checking Fortran 90 kind of MPI_INTEGER_KIND >>>> (selected_int_kind(9))... >>>>> configure: error: Could not determine kind of >>>> selected_int_kind(MPI_INTEGER_KIND) >>>>> >>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel >>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is >>>> 4.4.6 >>>>> >>>>> I've attached the output from the configure command. >>>>> >>>>> Thanks >>>>> >>>>> -- >>>>> Paul Hatton >>>>> High Performance Computing and Visualisation Specialist >>>>> IT Services, The University of Birmingham >>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>>>> [Service Manager, Birmingham Environment for Academic Research] >>>>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>>>> >>>>> >>> 12_12_06_19h48m.log>___ >>>>> users mailing list >>>>> us...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>> >>>> >>>> -- >>>> Jeff Squyres >>>> jsquy...@cisco.com >>>> For corporate legal information go to: >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>> >>>> >>>> ___ >>>> users
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
failed one attached. -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: 06 December 2012 21:17 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > This does not appear to be the right config.log -- the test in question > passed: > > configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9)) > configure:53507: gfortran -o conftest conftestf.f90 > configure:53514: $? = 0 > > > > On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > > > Thanks. zip-ed config.log attached > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -Original Message- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 20:54 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> I have not tested with gfortran 4.7.2. > >> > >> Can you send the config.log file? (please compress) > >> > >> > >> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > >> > >>> I've searched the FAQ but not come up with anything about this ... > >> with OpenMPI 1.6.3 and gcc 4.7.2, when I > >>> > >>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > >>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > >>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ > >>> --with-openib \ > >>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > >>> > >>> configure fails with > >>> > >>> checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9))... > >>> configure: error: Could not determine kind of > >> selected_int_kind(MPI_INTEGER_KIND) > >>> > >>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > >> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is > >> 4.4.6 > >>> > >>> I've attached the output from the configure command. > >>> > >>> Thanks > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> >> 12_12_06_19h48m.log>___ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> -- > >> Jeff Squyres > >> jsquy...@cisco.com > >> For corporate legal information go to: > >> http://www.cisco.com/web/about/doing_business/legal/cri/ > >> > >> > >> ___ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > *** > ** > > ** > ** > > ** WARNING: This email contains an attachment of a very suspicious > type. ** > > ** You are urged NOT to open this attachment unless you are > absolutely ** > > ** sure it is legitimate. Opening this attachment may cause > irreparable ** > > ** damage to your computer and your files. If you have any questions > ** > > ** about the validity of this message, PLEASE SEEK HELP BEFORE > OPENING IT. ** > > ** > ** > > ** This warning was added by the IU Computer Science Dept. mail > scanner. ** > > &g
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Oh, sorry - I tried a build with the system gcc and it worked. I'll repeat the failed one and get it to you. Sorry about that. -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: 06 December 2012 21:17 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > This does not appear to be the right config.log -- the test in question > passed: > > configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9)) > configure:53507: gfortran -o conftest conftestf.f90 > configure:53514: $? = 0 > > > > On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > > > Thanks. zip-ed config.log attached > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > > >> -Original Message- > >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On > >> Behalf Of Jeff Squyres > >> Sent: 06 December 2012 20:54 > >> To: Open MPI Users > >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > >> 4.7.2 > >> > >> I have not tested with gfortran 4.7.2. > >> > >> Can you send the config.log file? (please compress) > >> > >> > >> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > >> > >>> I've searched the FAQ but not come up with anything about this ... > >> with OpenMPI 1.6.3 and gcc 4.7.2, when I > >>> > >>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > >>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > >>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ > >>> --with-openib \ > >>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > >>> > >>> configure fails with > >>> > >>> checking Fortran 90 kind of MPI_INTEGER_KIND > >> (selected_int_kind(9))... > >>> configure: error: Could not determine kind of > >> selected_int_kind(MPI_INTEGER_KIND) > >>> > >>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > >> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is > >> 4.4.6 > >>> > >>> I've attached the output from the configure command. > >>> > >>> Thanks > >>> > >>> -- > >>> Paul Hatton > >>> High Performance Computing and Visualisation Specialist > >>> IT Services, The University of Birmingham > >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > >>> [Service Manager, Birmingham Environment for Academic Research] > >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] > >>> > >>> >> 12_12_06_19h48m.log>___ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> -- > >> Jeff Squyres > >> jsquy...@cisco.com > >> For corporate legal information go to: > >> http://www.cisco.com/web/about/doing_business/legal/cri/ > >> > >> > >> ___ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > *** > ** > > ** > ** > > ** WARNING: This email contains an attachment of a very suspicious > type. ** > > ** You are urged NOT to open this attachment unless you are > absolutely ** > > ** sure it is legitimate. Opening this attachment may cause > irreparable ** > > ** damage to your computer and your files. If you have any questions > ** > > ** about the validity of this message, PLEASE SEEK HELP BEFORE > OPENING IT. ** > > ** > ** > > ** This warning was added by the IU Computer Science Dept. mail > scanner. ** > > > *** > ** > > > > > > ___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Thanks. Is this with gcc in the default location (/usr/bin/gcc) or elsewhere? It may not be relevant, but I built v4.7.2 and installed it outside of the system area: [appmaint@bb2login04 openmpi-1.6.3]$ which gcc /gpfs/apps/gcc/v4.7.2/bin/gcc [appmaint@bb2login04 openmpi-1.6.3]$ gcc -v Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/gpfs/apps/gcc/v4.7.2/libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ./configure --prefix=/gpfs/apps/gcc/v4.7.2 --disable-multilib Thread model: posix gcc version 4.7.2 (GCC) [appmaint@bb2login04 openmpi-1.6.3]$ module unload apps/gcc [appmaint@bb2login04 openmpi-1.6.3]$ which gcc /usr/bin/gcc clutching at straws a bit here ... but I have built it with Intel 2013.0.079 which is also installed in the applications area and loaded with a module. -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Gunter, David O > Sent: 06 December 2012 21:06 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > I just tried with the following: > > $ gcc --version > gcc (GCC) 4.7.2 > Copyright (C) 2012 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is > NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > PURPOSE. > > $ ./configure --prefix=/tmp/dog/openmpi/1.6.3-gcc-4.7.2 F77=gfortran > FC=gfortran CC=gcc CXX=c++ --with- > platform=contrib/platform/lanl/tlcc2/optimized-panasas 2>&1 | tee > test.log > > configure completed without error as did the subsequent make. > > Here's the relevant part of the configure output: > > ... > checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... > 4 > checking Fortran 90 kind of MPI_ADDRESS_KIND (selected_int_kind(18))... > 8 > checking Fortran 90 kind of MPI_OFFSET_KIND (selected_int_kind(18))... > (cached) 8 > ... > > -- > David Gunter > HPC-3: Infrastructure Team > Los Alamos National Laboratory > > > > > On Dec 6, 2012, at 1:42 PM, Paul Hatton wrote: > > > I've searched the FAQ but not come up with anything about this ... > with OpenMPI 1.6.3 and gcc 4.7.2, when I > > > > ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > > F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > > --with-tm=/gpfs/sysapps/torque/4.1.2 \ > > --with-openib \ > > 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > > > > configure fails with > > > > checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9))... > >configure: error: Could not determine kind of > selected_int_kind(MPI_INTEGER_KIND) > > > > Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is > 4.4.6 > > > > I've attached the output from the configure command. > > > > Thanks > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > 12_12_06_19h48m.log>___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
This does not appear to be the right config.log -- the test in question passed: configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9)) configure:53507: gfortran -o conftest conftestf.f90 configure:53514: $? = 0 On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote: > Thanks. zip-ed config.log attached > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > >> -Original Message- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On >> Behalf Of Jeff Squyres >> Sent: 06 December 2012 20:54 >> To: Open MPI Users >> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc >> 4.7.2 >> >> I have not tested with gfortran 4.7.2. >> >> Can you send the config.log file? (please compress) >> >> >> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: >> >>> I've searched the FAQ but not come up with anything about this ... >> with OpenMPI 1.6.3 and gcc 4.7.2, when I >>> >>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ >>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \ >>> --with-tm=/gpfs/sysapps/torque/4.1.2 \ >>> --with-openib \ >>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log >>> >>> configure fails with >>> >>> checking Fortran 90 kind of MPI_INTEGER_KIND >> (selected_int_kind(9))... >>> configure: error: Could not determine kind of >> selected_int_kind(MPI_INTEGER_KIND) >>> >>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel >> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is >> 4.4.6 >>> >>> I've attached the output from the configure command. >>> >>> Thanks >>> >>> -- >>> Paul Hatton >>> High Performance Computing and Visualisation Specialist >>> IT Services, The University of Birmingham >>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton >>> [Service Manager, Birmingham Environment for Academic Research] >>> [Also Technical Director, IBM Visual and Spatial Technology Centre] >>> >>> > 12_12_06_19h48m.log>___ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > * > ** ** > ** WARNING: This email contains an attachment of a very suspicious type. ** > ** You are urged NOT to open this attachment unless you are absolutely ** > ** sure it is legitimate. Opening this attachment may cause irreparable ** > ** damage to your computer and your files. If you have any questions ** > ** about the validity of this message, PLEASE SEEK HELP BEFORE OPENING IT. ** > ** ** > ** This warning was added by the IU Computer Science Dept. mail scanner. ** > * > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
Thanks. zip-ed config.log attached -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: 06 December 2012 20:54 > To: Open MPI Users > Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc > 4.7.2 > > I have not tested with gfortran 4.7.2. > > Can you send the config.log file? (please compress) > > > On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > > > I've searched the FAQ but not come up with anything about this ... > with OpenMPI 1.6.3 and gcc 4.7.2, when I > > > > ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > > F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > > --with-tm=/gpfs/sysapps/torque/4.1.2 \ > > --with-openib \ > > 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > > > > configure fails with > > > > checking Fortran 90 kind of MPI_INTEGER_KIND > (selected_int_kind(9))... > >configure: error: Could not determine kind of > selected_int_kind(MPI_INTEGER_KIND) > > > > Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel > 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is > 4.4.6 > > > > I've attached the output from the configure command. > > > > Thanks > > > > -- > > Paul Hatton > > High Performance Computing and Visualisation Specialist > > IT Services, The University of Birmingham > > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > > [Service Manager, Birmingham Environment for Academic Research] > > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > > > 12_12_06_19h48m.log>___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users * ** ** ** WARNING: This email contains an attachment of a very suspicious type. ** ** You are urged NOT to open this attachment unless you are absolutely ** ** sure it is legitimate. Opening this attachment may cause irreparable ** ** damage to your computer and your files. If you have any questions ** ** about the validity of this message, PLEASE SEEK HELP BEFORE OPENING IT. ** ** ** ** This warning was added by the IU Computer Science Dept. mail scanner. ** * <>
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
I just tried with the following: $ gcc --version gcc (GCC) 4.7.2 Copyright (C) 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. $ ./configure --prefix=/tmp/dog/openmpi/1.6.3-gcc-4.7.2 F77=gfortran FC=gfortran CC=gcc CXX=c++ --with-platform=contrib/platform/lanl/tlcc2/optimized-panasas 2>&1 | tee test.log configure completed without error as did the subsequent make. Here's the relevant part of the configure output: ... checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... 4 checking Fortran 90 kind of MPI_ADDRESS_KIND (selected_int_kind(18))... 8 checking Fortran 90 kind of MPI_OFFSET_KIND (selected_int_kind(18))... (cached) 8 ... -- David Gunter HPC-3: Infrastructure Team Los Alamos National Laboratory On Dec 6, 2012, at 1:42 PM, Paul Hatton wrote: > I've searched the FAQ but not come up with anything about this ... with > OpenMPI 1.6.3 and gcc 4.7.2, when I > > ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > --with-tm=/gpfs/sysapps/torque/4.1.2 \ > --with-openib \ > 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > > configure fails with > > checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... >configure: error: Could not determine kind of > selected_int_kind(MPI_INTEGER_KIND) > > Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel 2013.0.079 > and also the system (Scientific Linux 6.3) gcc which is 4.4.6 > > I've attached the output from the configure command. > > Thanks > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
I have not tested with gfortran 4.7.2. Can you send the config.log file? (please compress) On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote: > I've searched the FAQ but not come up with anything about this ... with > OpenMPI 1.6.3 and gcc 4.7.2, when I > > ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ > F77=gfortran FC=gfortran CC=gcc CXX=c++ \ > --with-tm=/gpfs/sysapps/torque/4.1.2 \ > --with-openib \ > 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log > > configure fails with > > checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... >configure: error: Could not determine kind of > selected_int_kind(MPI_INTEGER_KIND) > > Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel 2013.0.079 > and also the system (Scientific Linux 6.3) gcc which is 4.4.6 > > I've attached the output from the configure command. > > Thanks > > -- > Paul Hatton > High Performance Computing and Visualisation Specialist > IT Services, The University of Birmingham > Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton > [Service Manager, Birmingham Environment for Academic Research] > [Also Technical Director, IBM Visual and Spatial Technology Centre] > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
[OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
I've searched the FAQ but not come up with anything about this ... with OpenMPI 1.6.3 and gcc 4.7.2, when I ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \ F77=gfortran FC=gfortran CC=gcc CXX=c++ \ --with-tm=/gpfs/sysapps/torque/4.1.2 \ --with-openib \ 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log configure fails with checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... configure: error: Could not determine kind of selected_int_kind(MPI_INTEGER_KIND) Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is 4.4.6 I've attached the output from the configure command. Thanks -- Paul Hatton High Performance Computing and Visualisation Specialist IT Services, The University of Birmingham Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton [Service Manager, Birmingham Environment for Academic Research] [Also Technical Director, IBM Visual and Spatial Technology Centre] configure-12_12_06_19h48m.log Description: configure-12_12_06_19h48m.log
